AMCG00018608 (cldn5,LOC103357131)


Basic Information

Item Value
gene id AMCG00018608
gene name cldn5,LOC103357131
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14927162 ~ 14927524 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018608
ATGGTGACCATCGCCGGGGCGCAGTGCACCAACTGCATCAGGGGCGAGTCGGTGAAGGCCAGGGTGGTCAACGCCGGGGGGGTCGTCTATATCATCAGCGCCTTGTTCGTGCTGGTGCCCCTGTGCTGGATGGCGCACAACATCATCGTCGATTTCTACGACCCCGCCGTGCCCTCGCCCAAGAAGAGGGAGATCGGAGCGTCTCTGTACATCGGCTGGGCCGCCACGGCGCTGCTCCTCCTCGGCGGcgggctgctctgctgctcctGTCCGGCCTCGGGGAACCCCGCGTACGCGGTCAGGTACGCACCCACGAAAAGAGCCGCGCAGAACGGGGACTACGATAAGAGGAATTACgtttga

Function

symbol description
cldn5 Predicted to enable identical protein binding activity. Involved in several processes, including establishment of blood-retinal barrier; positive regulation of bicellular tight junction assembly; and regulation of gene expression. Located in apicolateral plasma membrane and bicellular tight junction. Colocalizes with cortical actin cytoskeleton. Implicated in schizophrenia.

NR:

description
PREDICTED: claudin-5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018608 True 363 mRNA 0.64 1 14927162 14927524

Neighbor

gene id symbol gene type direction distance location
AMCG00018600 NA coding upstream 93098 14831500 ~ 14834064 (+)
AMCG00018593 NA coding upstream 102404 14821991 ~ 14824758 (+)
AMCG00018588 bicdl1 coding upstream 195498 14707571 ~ 14731664 (+)
AMCG00018586 LOC107677981,LOC107567443 coding upstream 280330 14630062 ~ 14646832 (+)
AMCG00018585 NA coding upstream 312717 14599262 ~ 14614445 (+)
AMCG00018603 ufd1l coding downstream 22112 14949636 ~ 14954263 (+)
AMCG00018611 ppil2 coding downstream 502760 15430284 ~ 15468382 (+)
AMCG00018619 NA coding downstream 656069 15583593 ~ 15585087 (+)
AMCG00018618 NA coding downstream 710450 15637974 ~ 15648175 (+)
AMCG00018620 NA coding downstream 741291 15668815 ~ 15669669 (+)
G117380 NA non-coding upstream 27244 14855079 ~ 14899918 (+)
G117389 NA non-coding upstream 130012 14796531 ~ 14797150 (+)
G117388 NA non-coding upstream 132923 14793885 ~ 14794239 (+)
G117387 NA non-coding upstream 133358 14792796 ~ 14793804 (+)
G117382 NA non-coding upstream 140675 14786025 ~ 14786487 (+)
G117521 NA non-coding downstream 564722 15492246 ~ 15529341 (+)
G117557 NA non-coding downstream 699815 15627339 ~ 15627719 (+)
G117574 NA non-coding downstream 765689 15693213 ~ 15695253 (+)
G117573 NA non-coding downstream 767902 15695426 ~ 15698865 (+)
G117660 NA non-coding downstream 1155829 16083353 ~ 16121445 (+)
G117383 NA other upstream 139029 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 150052 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 514883 14408958 ~ 14412279 (+)
AMCG00018564 mlec,LOC106579938 other upstream 527623 14330841 ~ 14399539 (+)
AMCG00018602 LOC102789415 other downstream 27040 14954564 ~ 14981705 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 2140688 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 3053616 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 3791682 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 3900073 18827597 ~ 18840095 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location