AMCG00018609


Basic Information

Item Value
gene id AMCG00018609
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15171962 ~ 15177670 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018609
ATGCACAAAGTCATGCTGTGTCTTGCTCTCTCTCAGGTTTCAGAGGCGTGTGACCTCGTGCTGGTCAATGGCAAAGAGATGAGAGGTCAGCAGAATGTGCAGGTGAACTTCACCTACCTATACCTGAGCACCCAACTGCAGCTGACAGTGTGGGTCCCCCGGCTGCCGCTGCAGATCGAGGTGTCCGACACCGAGCTGAGCCAGATCAAGGGCTGGAGGGTGCCCATCGTCTCCAACAAACGGCCGACGCGAGACAGTGACGATGAGGACGACGATGAGAAGAAGGGCAAAGGTTGTACCCTGCAGTACCAGCACGCCGTGGTGCGGGTTCTGACCCACTTCGTGGCGGAGCCGGCCGACCCTGGTAGAGAGCTAATCTACATGCTGGGCTCCGACTGGCAGGCGGACATCACTGAGCTGGTCCTGGACTTCTTTAAGGTGGAAGACCAGCGCATTGCCCGGCTGCAGGATGGCCGGGTCCTGGTGGGCAGGGACCTGGGCATCACCACCATCCAGGTCCTCTCCCCGCTGTCCGATTCCATTCTGGCTGAGAAGACGATCACGGTGCTGGATGACAAGGTGACCATCACAGACTTGGGGGTGCAGCTGGTGGCGGGGCTGTCTCTCATCCTGCAGCCCAGCCCTGGCAGCAGCCGAGCCATCGTGGCCACCACCACCGCGCAGGAGCTGCTACACTCCGCCAAGCAGGAAGCCGTGATCAGTGCCTGGATCCAGTTCAGTGACGGCTCAGTGACGCCTCTGAACATTTATGACCCCAAAGACTTCACTCTGAGCGTCACGTCCTTGGACGAGGCTGTCATCTCCACCTATCAGGACTCTCCGATGAAGTGGCCTGTGGTGGTGGCTGAGGGGGAGGGCCAGGGGACGCTGGTCAAGGTGGAGATGGTGATTTCCGAAGCCTGCCAGAAGTCCAAGAGGAAGAGCGTGCTGGCTGTAGGGAACGGCAGCATCAAAGTCAAGTTTGGGCAAAATGATGTGGATCAGATGGCGGGAGGCCCAGATGGCGGGGAGGGCGACGGTAACCTAGACAACAGTGCCAGTGACCGCCGGCAGAAAGCCTCAGAGCAGGACAAGACGGGGCCAGATGGCTGGAAGTACAACAGTGCCTCCTCTGACCGCGAGGAGGGAGCCATGAGGAAAGTCAGCACCACCACCAAGACCACCATCACCAACCGGGTGGGTGGGGGGAAGCTGTCAGACGGAGAGGGGCAGGTCCAGAACATCCCCATTGACTTCACCAACTTCCCTGGCCAGGTGGACCTCCCAGGCGGTGGCGGGGGGTTCGGCGGCGGGGCAGAGAGTGACCTGTCCCAGACGCCCCGAGGGCTGTCGGACCTTGAGATTGGGATGTACGCGCTGCTGGGTGTCTTCTGCCTGGCCATCCTGGTGTTCCTCATCAACTGTGTGACCTTCGCCCTAAAGTACCGTCACAAGCAGGTGCCGGCGCTAGAGCAGGGCAATATGAACCACGCCCATGACTGGGTGTGGCTGGGCAATGAGGCGGAGCTGCTGGAGCACCACACCGACTCCTCCCCCCAGCAGGACGAGTGCACCACCATTATCGACCGGGGCGAGGAGAGCAAGTACCTCCTCAATGGAGGCTGCCAGAAGAACATCCAGGGCCAGGTGCACCGGTCTGCCGAGCCAGGGCCCTGCAATGGGAAAGAGCCCAAAAGCGAACCTCTCAGCTCCCCCACTTCCAAGCGGAAGAGGGTGAAGTTCACCTCCTTTGCCACCATCCTGCCAGATGACGGGGGCCCTTACACCAACTCCATACTCATAGGCAACGAGGACGACATAAAGTGGGTGTGTCAGGACATGGACCTCGGGCAGTCAACAGAAATCAGAACATACATGGAGAGGCTACAAGACAGTCTGTGA

Function

GO:

id name namespace
GO:0072175 epithelial tube formation biological_process
GO:0048856 anatomical structure development biological_process
GO:0001838 embryonic epithelial tube formation biological_process
GO:0001841 neural tube formation biological_process
GO:0021915 neural tube development biological_process
GO:0035148 tube formation biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0016331 morphogenesis of embryonic epithelium biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018609 True 1902 mRNA 0.60 4 15171962 15177670

Neighbor

gene id symbol gene type direction distance location
AMCG00018604 NA coding downstream 214076 14957253 ~ 14957886 (-)
AMCG00018605 cdc45 coding downstream 223695 14939774 ~ 14948267 (-)
AMCG00018606 LOC106580435,LOC105014311,LOC108265487 coding downstream 248955 14899812 ~ 14923007 (-)
AMCG00018607 sept5 coding downstream 286611 14880599 ~ 14885351 (-)
AMCG00018601 NA coding downstream 296558 14874751 ~ 14875404 (-)
AMCG00018610 NA coding upstream 59490 15237160 ~ 15292085 (-)
AMCG00018613 aacs,LOC107672615,LOC108255473 coding upstream 202073 15379743 ~ 15418462 (-)
AMCG00018612 bri3bp coding upstream 244245 15421915 ~ 15428751 (-)
AMCG00018614 mapk1,LOC107386038,LOC103371039 coding upstream 348620 15526290 ~ 15535846 (-)
AMCG00018615 NA coding upstream 375034 15552704 ~ 15569734 (-)
G117472 NA non-coding downstream 191578 14979041 ~ 14980384 (-)
G117441 NA non-coding downstream 314367 14856420 ~ 14857595 (-)
G117438 NA non-coding downstream 336237 14833856 ~ 14835725 (-)
G117432 NA non-coding downstream 387649 14780287 ~ 14784313 (-)
G117338 NA non-coding downstream 467504 14703640 ~ 14704458 (-)
G117501 NA non-coding upstream 36498 15214168 ~ 15214431 (-)
G117646 tbx1 non-coding upstream 844928 16022598 ~ 16025073 (-)
G117710 NA non-coding upstream 1117160 16294830 ~ 16296445 (-)
G117809 NA non-coding upstream 1976332 17154002 ~ 17155261 (-)
G117853 NA non-coding upstream 2288464 17466134 ~ 17466434 (-)
G117377 NA other downstream 433650 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 651087 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 908808 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 1444092 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1914712 13253085 ~ 13257250 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 320992 15498662 ~ 15518315 (-)
G117784 NA other upstream 1831228 17008898 ~ 17009301 (-)
G117823 NA other upstream 2048420 17226090 ~ 17256271 (-)
G117899 NA other upstream 2425686 17603356 ~ 17603848 (-)
G118075 NA other upstream 3288698 18466368 ~ 18474245 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019498 TMEM132C coding NC_007132.7 CM002905.2 18597927 ~ 18824434 (-)