AMCG00018611 (ppil2)


Basic Information

Item Value
gene id AMCG00018611
gene name ppil2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15430284 ~ 15468382 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018611
CGGATTTCCTTGCTGGACAGTTTTCACGGAAGTGGTGTGGGAAGCGACTgtgtcttatttgtttttttaacacaaaatatcTTAAATTTGTGGATTTACACCACACAGAGACTGCGAGTTTTTTCCTCTCGAAAAGGCACCATATAAAGCCGTCAAGATGGGGAAGAGACAGCACCAAAAGGATAAAATGTACATCACGTGTTCTGAGTACACGCACTTCTATGGAGGAAAGAAACCAGaTATCCCGAAGGCTAACTTCAGGCGCTTGCCGTTTGATCACTGCAGtctaTCCCTTCAGCCATTTGAGTATCCCATGTGCACACCTGAAGGGCATGTCTTTGATTTGCTGAGCATAGTTCCCTGGATAAAGAAATTTGGGACCAACCCAATATCTGGAGAGAAACTGGAAGCCAAGTCCCTCATCAAGCTGAACATTGCAAAGAACAACGAAGGGAAGTTCCACTGCCCCGTCCTGTACAATGTGTTCACCAACAACTCGCACATAGTGGCCAACATGAAAACCGGCAACGTGTTTTCCTATGAGGCCGTGGAACAGCTCAATGTCAAAACCAAATCTTACAAGGACCTGCTGACCGACGAGCCCTTCTCTCGCTCGGACATCATCACTCTACAGgaTCCCACAAACCTGGACAAGTTCAACGTCTCCAACTTCTTCCATGTTAAGAACAACTTGAAGGTCCCAGATCCAGATGAGGAGAAAGCCAGGTTGGACCCCTCGTACCATCTGAAGAGCACCAACATGGAAACCAGGGAGACGCTGGCTGAGCTCTACAAAGATTTCAAGGGCGACGAAATGCTGGCTGCCACTATGAAAGAACCAGCGACAAAGAAAACTGACAAACTGAATGCGGTCCGGTGCTTTGCCAAGGCCAGTCAGAGGCAGAACCGCAGCGGGCTGGCTTTGCCCAGTGAGCCAATGATGTTCTTAGCTGAGACGCCCAGCCTCCCCATGACTCTGTCACTGCAAGTGACAACTCTTGATGCCATTGAGGACGACACAGTGCGCTACCAGTACGTGAAGAAGAAGGGCTACGTCCGGCTGCACACCAACAAGGGGGACATCAATCTGGAGTTGTACTGTGACAAGGTGCCGATAGCAGGTGAAAACTTCATCAAGCTCTGCAAGAAGGGTTACTATGATGGGACTATTTTCCACAGATCCATCCGAAACTTTATGATTCAAGGTGGGGATCCTACAGGAACAGGCACAGGTGGAGAGTCGCACTGGGGAAAGCCATTCAAGGACGAGTTCAGGCCCAACCTCTCCCACACTGGTCGAGGAGTCCTCAGCATGGCAAACTCTGGGCCCAATTGCAATAAATCTCAGTTCTTCATAACATTTCGTTCCTGCCCCTACCTGGACAGGAAGCACACAGTCTTTGGCAGCTGTCGGAAGCCAATTTTAGTGTTTTATGAAGAGACCCACAACAAAATCAACCAGACCGGCACAGCATGTTTAAGAGGCCGCTTCAGTACAGTGTTCTGCGATGCTTCCTGTGATTCCGAGATTAAACTCCTGAGTGCCACCGTGTTTGTGGATCCCTACGAAGAGGCTGATGCCCAGATCGCAGCGGAGCGGGAGAAGACTCTGAGAGAGCAAGAGGAGGAGCGAGCACGGACCAGTGCCGAGCGGCCCAAGACCGACGCTGAACAGGCCCCCAAGACCTACCGGCCAGGAGTGGGAAAGTACATCAACGTGGTGCCAAAGAAACGGTCGGCCCCGGAGGTGGAAAGTGGACCCTCCACTAGCGCTGTCAAGAAGCCGAAGGGAAAAACTGGCTTTGGGGATTTCAGCTCCTGGTAGAGCAGGAATGGACACTGCCAGACCCAGACCACACTGACGGGACAGGGGCCATTGCAAAGACTGCAGAACCAGCCGCAGGCATTGTGGGTTATTGTGCCACACACTTGAGCTATACAACTCCTCAGTGTTGTTGCAGCTGTGCTTGTTGCTCATGTACAGTAAATCGGTAGAAGCCGCCCCAGGGATGAGCAGGTCTGCGGATGGAAAAAGTGTGAGTGGGTGATGGTAGATCTTTATTATGGGGAGGGAAAaattctgatgtttttttttattattattattattgggttgGGTACAGGGGGGGTTCATTGGGAGTAGCTGGGGATAGGAAATTAAATctcatgtaaaataatctttCTTCCTTCAACACTGCAGGGTGTCATTATTATCCTATTTTTCCAGTcgtaaaagtttttttttgtttttataaatcgttattatttttcctttttattgtgcaaagttgtaataaaataacatttgcaattaCGATTTGCTTCCTCCATGATGTACAATGTAATGGCAGACTGCTGTGACAGGTTTCAGGTTTTGTGGAGAGGCAGAGGGTTCTGCTgtctcggggggggggggtcctcgTCAGTTTCCTGTGAGGCGGCACTCCCAGTCGCCAGGGTGAGAGATAGTGTAAGAGTGTGACAGCTCGGTGACAACTTGCTACACTCTAATAATCTGATTGTCTTATTATAATTCAGATTTTCTTTGGTTGCGGACCATGCTCAGAGATGTCGCTAATATCTTAAACACCCTTCCCCAATTGCATAATTTCCAGAATGTACCAGAACCTGTGCGAATGGCTGCCGTTTCCTGTTCTGAGCTCTACTTTTATTGTGATGTCTggttttgttggtttgtgtgtttcagatgTAACTTCTTTTTGTCATTGCATTAGATTGGAAACTATTTTTCTCAGCTGATTCTATGAGAGTAGTTTCTTCCAGTCAGGTTATGGACTTTTTGAACATAGATGTGTTTTGTGAACTAAACTCAAGGTAAAGTTCACAAAGAACCGCTCTTCAGCAAAGGCCTTGCACTATAATTGTAGTCTGATCTAATTCACACTTCTAATTCTagtctatatgtatatgtataatttagtgttttattaaattttttacTGTCTGCTTCCCTTCTTGTGTGAACAGAGTGTTGCGTCTCTGGATTGTCTCCCGgatattaaacatttaccaG

Function

symbol description
ppil2 Predicted to enable peptidyl-prolyl cis-trans isomerase activity and ubiquitin-ubiquitin ligase activity. Predicted to be involved in protein peptidyl-prolyl isomerization and protein polyubiquitination. Predicted to act upstream of or within protein folding and protein ubiquitination. Predicted to be active in nucleus. Orthologous to human PPIL2 (peptidylprolyl isomerase like 2).

NR:

description
PREDICTED: peptidyl-prolyl cis-trans isomerase-like 2

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0016567 protein ubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K10598 PPIL2, CYC4, CHP60; peptidyl-prolyl cis-trans isomerase-like 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018611 True 3034 mRNA 0.47 21 15430284 15468382

Neighbor

gene id symbol gene type direction distance location
AMCG00018603 ufd1l coding upstream 476021 14949636 ~ 14954263 (+)
AMCG00018608 cldn5,LOC103357131 coding upstream 502760 14927162 ~ 14927524 (+)
AMCG00018600 NA coding upstream 596220 14831500 ~ 14834064 (+)
AMCG00018593 NA coding upstream 605526 14821991 ~ 14824758 (+)
AMCG00018588 bicdl1 coding upstream 698620 14707571 ~ 14731664 (+)
AMCG00018619 NA coding downstream 115211 15583593 ~ 15585087 (+)
AMCG00018618 NA coding downstream 169592 15637974 ~ 15648175 (+)
AMCG00018620 NA coding downstream 200433 15668815 ~ 15669669 (+)
AMCG00018624 NA coding downstream 214073 15682455 ~ 15691741 (+)
AMCG00018623 NA coding downstream 303927 15772309 ~ 15777303 (+)
G117380 NA non-coding upstream 530366 14855079 ~ 14899918 (+)
G117389 NA non-coding upstream 633134 14796531 ~ 14797150 (+)
G117388 NA non-coding upstream 636045 14793885 ~ 14794239 (+)
G117387 NA non-coding upstream 636480 14792796 ~ 14793804 (+)
G117382 NA non-coding upstream 643797 14786025 ~ 14786487 (+)
G117521 NA non-coding downstream 23864 15492246 ~ 15529341 (+)
G117557 NA non-coding downstream 158957 15627339 ~ 15627719 (+)
G117574 NA non-coding downstream 224831 15693213 ~ 15695253 (+)
G117573 NA non-coding downstream 227044 15695426 ~ 15698865 (+)
G117660 NA non-coding downstream 614971 16083353 ~ 16121445 (+)
AMCG00018602 LOC102789415 other upstream 448579 14954564 ~ 14981705 (+)
G117383 NA other upstream 642151 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 653174 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 1018005 14408958 ~ 14412279 (+)
AMCG00018564 mlec,LOC106579938 other upstream 1030745 14330841 ~ 14399539 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 1599830 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 2512758 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 3250824 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 3359215 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 3425953 18894335 ~ 18908956 (+)

Expression


Co-expression Network