AMCG00018612 (bri3bp)


Basic Information

Item Value
gene id AMCG00018612
gene name bri3bp
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15421915 ~ 15428751 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018612
TGTTGCTATACGTTTGCATTGCATGTACGAATGGCATAATGAAATCGATATCGCGATATAAAGACACGTCGTGGCGGTATACCGCGCGGTGGCGGGCTCGAGTCGCAGGGCGGAAGCGCAGTGCGCGGCCGACCGGAGTGTTTTGCTGGAAGCAGCCTCTTCCGGGTCTGAGCACCGCGCAACTCATTATTTTACCCAGCCCGGCCACAAAACGATTCTTTTTTTGTAAGCAGATCGTGTCTTGCATTAGTATTGAAGCCATGAAGGCAGTGAGGTCGCTCGCAATGGCCGCGGTTCTTGTTGCGTCCTTGTTCTGCGCAGAAGCGGCCAGGAGTCGGAAGGACTCGAGCAGCCAGAATAGTTTCAGACGCGCGGCTAACGGCCTCCACCAGGCGCTGAGCAACGTCTTCGGAGAGGACAGCATCCGCGCTTTGCACAAGTTTTTCTCCAAGACCACAGAGCGCTTCGTCTATGGGGTGGACGCATTCTTGGACACAGTCTGGAAGATATGGACAGACCTTTTAGATGTTCTGGGAATTGACTCCTCCAACCTGAGCCACTACTTCAGCCCAGCTGCAGTGACCAGCTCCCCAGCCCGAGCTCTTCTGTTGGTGGCGGCGGTGCTGCTCTCCTATTGGCTGCTCTCGCTCTTCCTGGGTGGGTTCTTCTACATCCTGCACGTGCTGTTTGGCCGCTTCTTCTGGCTGGTGCGCGTCACCCTGTTCGCCCTCTCTTGCCTCTACATCCTGCAGAAGTTTGAGGGCGACCCCGAGCGCGCCATCCTGCCCCTGTGCTTCGTAATAGCCATCTACTTTATGACCGGGCCTGTGGGCTCCTACTGGAGGAGGGGCGGTGGAGGAGGCAGCGGCAACACCCTGGAGGAGAAGATCGATCAGCTGGATGGACAGATCCGCCTGCTCAACATCCGCCTCAGCCGCGTCATCGAAAGCCTGGACCGCAGCAGTGAACAGTGACTGTGAGCCGGGGACACCCAGGCCCTGAGGAAGAGGGctggaaggagggagagagggagggaggcagggaaggAATGGAGAATACATGTTCTGAGGTCCACTGAGGGTACAGGACAGCAAAGCAGGGTAGAGCCGATACATGAAGCCCACTTTGCTGGCCAGgaccctgttttttttattatgatatcTTACTGTACTGGAATTATTCCCCCCCCCAACCAGTTTTCACCTCCTGTAGTATATTCCGACATGCTTTTAAATTCCCCACCTCCTTCATTAAGCTGAAAGGTTTAATGGATGGGGTGATGTCTTTGAGACGTTTGCATGATAATTTTGTTTAGCACTGTacgttgttgttattttattttgtgtttttatgttatgCTATCAATTAAGCCTTTCAGGACATGTTTATAGCACTGGTGTACAAAGCAAACCACACTACAGGGGGTTAAAACGGTTTCCTACATGACTGGCTCTTGGAAGTTTCCGTGATGCtcagcagttgtttttttgaagACCGCATAaatagaagaaggaaaaaaaataatacaccatTGTAATTCCATGTTCCTTTCGTTGAGTTCAGTCTCTGCCAATTCTCCATGTTGCCCGGGAATGTAGATCTTGACCCTCAGTTCCGTCCATGTGTTGATGAGGAAAGGATATCATTTctaatctttattattaatttattctgaagAAGTTCAGACCATTGAACCCCAGTTCACTTACTTTTGTTACTGTGTAGTGTGTCGGAGAACTTCTCTGCAGTTCTGGGGTCCTATTTAGGTCTTAAGTGCACTGGATCACCTATTCTAGTATGAGAATGAAGTGGTTTGGCAGAGCTCTGCTAGTTTCTTTAGGATGTTTTTTGGAATTGATTTAGATGAGTTCCTCTCAGTGGTTAGATATCTGTTGAGAATCATGGCTGTGATTTCCCTGGATTGAAATAGAGGTTATAGTTTCCTGAATGGATAAAGTAAATCTTGGAAATTAACGTTACCCTTTAATGGGACCTTCCTCCCTTGTTCCACCACATTCCCTTTTCCTTCTATCCAATATTATGTGGTCTTCTTTGATCcaactttacttatttttaaaaagaaggcAATTCTTGTCCAGCAAATTTCTGTCACTGAAATTTTGGGGGgcaaaaaacagttaaaaaacaactaGTGTAATGTTGTGTCCCCAAGTCTGCACAAGTCAGTGGCACCTCTACACTAAGAACAGCACAGTGGCCCATCTTTCCCTCAAGGACTGGCTGTTCTGTGAGAATCTGTCCACTAATGCTGAACACAGGCTGCCCATGTCTGGGGCCACATCCACGCCAAGAGCCAATCTGCCGCCACTATGTGTAAATAAGAATTCCCAGCCCCGATTCCCCTGACAGCCCAGGACTCGAAAGCTTGAACAGTTAAACACTGGATTTTTAACCCTGTAAGTCTTTGCTCGTAATTTCTTTTGAACAACGCGGCAGAACAAAAAAGCACCAAACCAGTCTTGAGTGAACTGTCACCATCCCATCGTAGCAATATTCTATTCAATATCAGGACTTTTTTTGTATACTGTGGACCAGTTAAGTTGGTGTCCACTGCCGAGAAGGAAGCAAGCGGGTTTGGTTTAGGGGCAGGAGGGAGCTGTGTTGGAAGACATGTTAAACTCAGGGAGatgaaacataagaaaacattattattattatctcttcACCTATGTTGGCCCTGTTTAGGCATGGGGCTGCTCAGAGCCACGGCCTTCCAGGGTTAATTCCATGTTCCATTAGGAAAATGCCTTCCAACACGAAGCCTCAGTCCCTTAGGAGATTTGATCTGTTACCAGAGAGTTTGGATGTTTCtgccattttgtatttgttgtttttttagtagttgttgtagttttgtaaatcggggtgggggggattcaaTAGTGAAAAAAGCATGCATCTACTGTATTATTTTCGTTGGGCAGCTGTCTTTTCCTACTTCCTGTATGTGCTGGCTATAGCTTAACGTGCAGCTCTGCAATCGGATATAAGCTATTATTTTGCATATAGTAATACAGGTCACCCGGGAGGTTCTTGACTGGAAGCTTGGCTCTGCCTCTTCATAACTGTGTGTCATGTTGACCAGGTTTGTGTCCACTCCTTGCGCTCTGTCCTGCAGAGGAGATTTAAAGCCTCGGTCGTATTACAAGTGAATCGTGTATTGCTTGGTCTCTGTTGGATTAAATCCTTCTGTTTTCATGCTATGCAagacatttattattactgcagaatttttaaaaatctactGCATTTGACACTGCATTGACTGTTGTACGGTTCAACTTGGTTATTTTAAAGTCAATTATGCTATAATGCCAAACTCACGAATGCACATATTCAGCCACTAGACATATTCTGCCAATGTATCACTGACCTTTGCACTAATTTATGTGTTCTGACACATGgatgtgtgatttgtgtttcacaggttttttttttaaataggtgtGAGCCTCCATCTGATATTTTGGATggacagagacaaaatgatacCTTTGCTCAACTTCTCAGAATACTTTAAAAgatattttatcttttgaatTATGTGAGAAtcaatttttcatttgtttagaAAATACCAGCATGAGCAAATCCCCAGGGCTCCGAATCATTCGGAAGCTTCTGGGTTGGGAGTTGCTGTCAGCAGCTGTGCTTTAAGGTGATTGTTAAAAGTAAAGTAACCGCTGTAATGAGGATGATGATTGAGTCTGAAGTTTAAACTAAATGATGCACTTGAAAGAAAGATGAAACCCAATCAATCATGATTTTTTCCCCATAGAAAGTCCTTCGGAGTTAATGTGCTTTGATAGCAAAGCAGCCACATTATAAGTGTTTCCAATTGTTCAAACCtagaaagtgtatttttattcccTGTCCCTATTCAACTGTGTCATGTTCAGCACAGATCCCATTTCTCAATCCCTTGCAAGGAGGGGGcaagaaatataaacatgtagCTGAGATTTTTTAAAACCTAAAGGATGATAGGCAGGATGATCGGAGtccattttggttgttttgagaAAAACTTCAATGGCACCTCAATGATTTTATATCTAAAAATTATTCTATTATAGAACAGTGCCCTTTGATGTTGGGAAACATTAGGCACTTTATTCAGCTGCTGCGTGTATTTGGTTTACAAGCGTTCAAAGTGtgcaaatttaaaattatgaaaattgacTTGAATCATTCTACCCGTTAACTCTTTTctcaaactcaaactcaaatTTCCTGTTTGGCATCAGTTTCAGAActgttaaataagtaaatggtGAAGAAGGAAGTTATAGCTGTTATAGTGTATactagtgttttttgtttttcctgcatgCATCAACAACACATGCTTGCATTGCTTTATTTGACTGTACatactgttttttattaaatatactgAATTAACCCAGACCTCAGAAATGCCTGCTCAGTTGCTTGACAGTCCATCCCTTTTGTGAATGTAGTGTTGAAGTGTTAGCTCGGCACAATCCCCCTTCTCTCAACTGTGTTTCTATGGTGCTGCTTTGCTTCTGTTCAGATGTGTGTGGATCACAACGATGCCAATGTGAACACGTTCCACTCCAGTCCGTCTTTGTTTCTTCCTTGCAGGAGCACTGAAATCTTTTGAGTGAACGCTTTTATTGGAAAAGATCTCACTAGCCAGTTATTCAGTACGTTTATTTTTATGGTaattattcagtgttttttttaatatcaatttttcAGTACTTTCAGTAATTTTTCGGGGTGTATATCTGAAGCCTGCTATTGATTTGTAGTGTGTCATATGTTTTGTGGTGATACGTTTCTTCAAGACGTCCTTTTACAATGATACTGAACGGTTCccgaataaatgaataaataaacttaaagtTTTATCATGAGTATCTTCCCTGAGTCTTCACTGCAaaaaacctttattttgtattgtttggttATGAGAAGTGAATGGAAATTGTATCCACACTAAAAACTTCCACAAGTTTGGAAACCCTGTGTGTTGTTAATCTGttctgt

Function

symbol description
bri3bp Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Orthologous to human BRI3BP (BRI3 binding protein).

NR:

description
BRI3-binding protein precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018612 True 5037 mRNA 0.43 3 15421915 15428751

Neighbor

gene id symbol gene type direction distance location
AMCG00018613 aacs,LOC107672615,LOC108255473 coding downstream 3453 15379743 ~ 15418462 (-)
AMCG00018610 NA coding downstream 129830 15237160 ~ 15292085 (-)
AMCG00018609 NA coding downstream 244245 15171962 ~ 15177670 (-)
AMCG00018604 NA coding downstream 464029 14957253 ~ 14957886 (-)
AMCG00018605 cdc45 coding downstream 473648 14939774 ~ 14948267 (-)
AMCG00018614 mapk1,LOC107386038,LOC103371039 coding upstream 97539 15526290 ~ 15535846 (-)
AMCG00018615 NA coding upstream 123953 15552704 ~ 15569734 (-)
AMCG00018616 top3b coding upstream 141521 15570272 ~ 15586730 (-)
AMCG00018621 LOC104964243 coding upstream 204695 15633446 ~ 15636944 (-)
AMCG00018622 ube2l3,ube2l3b,ub2l3,LOC106562742,LOC107599129,LOC105014760 coding upstream 219768 15648519 ~ 15657455 (-)
G117501 NA non-coding downstream 207484 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 441531 14979041 ~ 14980384 (-)
G117441 NA non-coding downstream 564320 14856420 ~ 14857595 (-)
G117438 NA non-coding downstream 586190 14833856 ~ 14835725 (-)
G117432 NA non-coding downstream 637602 14780287 ~ 14784313 (-)
G117646 tbx1 non-coding upstream 593847 16022598 ~ 16025073 (-)
G117710 NA non-coding upstream 866079 16294830 ~ 16296445 (-)
G117809 NA non-coding upstream 1725251 17154002 ~ 17155261 (-)
G117853 NA non-coding upstream 2037383 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 2086106 17514857 ~ 17515120 (-)
G117377 NA other downstream 683603 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 901040 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 1158761 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 1694045 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 2164665 13253085 ~ 13257250 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 69911 15498662 ~ 15518315 (-)
G117784 NA other upstream 1580147 17008898 ~ 17009301 (-)
G117823 NA other upstream 1797339 17226090 ~ 17256271 (-)
G117899 NA other upstream 2174605 17603356 ~ 17603848 (-)
G118075 NA other upstream 3037617 18466368 ~ 18474245 (-)

Expression


Co-expression Network