AMCG00018613 (aacs,LOC107672615,LOC108255473)


Basic Information

Item Value
gene id AMCG00018613
gene name aacs,LOC107672615,LOC108255473
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15379743 ~ 15418462 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018613
CGGAGACCGGCGCTCGGCTGTGGCGCGGCGGCCTGTCAGGGAAGTGAAGTGGCACTCCTGGGGGAACGGGCAGCCCGAGGTGGCATCACACCGACTCACGCTTGCGGCGAGGAAGCACTGTGTCCCGGGCAGCAGCATGTCGAAAGACACCGAGGGGATGAGCGAGGAAATCATGGAGTCCAACGTGCTGTGGTACCCGGACTCCAAGAAGAACACCCAGATGGACCGGTTCAGGGCGCAGGTGAACCGGGATTTCGGGCTCCACCTGGCTAACTACAGTGATCTGTACCAGTGGTCAGTGGAGAATTACAATGTGTTCTGGGCTGAGGTGTGGAAGTTCTGCGGGATTGTCAGCTCCCAGATGTACGAGGAGGTGGTTGACATGACAAAGAAGATCTCTGATGTCCCGGAGTGGTTCAGAGGCTCTCGCTTGAACTACGCGGAAAATCTCCTGAAGCACAAAGATCAGGACAAAGTCGCTCTTTATGCAGCAACGGAGGCCAGGGAGGAGATAACCAAGGTGACCTTCAGGGAGCTGCGCAGAGACGTGGCGCTGTACGCCGCCGCCATGAGGAAAATGGGCATCAGGACCGGGGACAGGGTCGTGGggtATCTGCCCAATGGGATCCATGCGGTGGAGGCCATGCTAGCAGCTGCGAGTATTGGAGCCATATGGAGCTCCACCTCCCCGGATTTTGGAGTCAATGGTGTTCTGGACCGTTTCTCCCAGATCCAGCCCAAGCTGATCTTCTCTGTGGCCGCGGTGGTGTACAATGGCAAGCAGCACGGCCACTTGGAAAAGCTGCAGAACGTCGTCAAAGGTTTACCAGATCTGAAGAAGGTGGTTGTGATCCCTTATGTGCGCTCAAGACAGGAGACGGATCTCTCCAGAATCCCAAACAGTGTGTTCCTGGAGGACTTCCTGGCCACGGCGAAGGATGGAGACCAGGACCCTCAGCTGGAGTTTGAGCAGCTTCCCTTCTCGCACCCTCTCTTCATCATGTTCTCCTCGGGCACCACCGGGGCGCCCAAATGCATGGTGCACTCGGCAGGGggaaCGCTCATTCAGCACCTAAAGGAGCACGTTCTCCATGGCAACATGACCAGCAGTGACGTCATCATCTACTACACCACGACCGGCTGGATGATGTGGAACTGGCTGATTTCCTCGCTGGCAGTCGGGGCGTCAGTGGTGCTGTACGATGGCTCTCCTCTCATGCCCACTCCCAATGTCCTCTGGGACGTGGTGGACAGATTAGGAATAACCATTTTTGGGACGGGGGCGAAGTGGTTAGCGGTACTAGAAGAGCGGAACTTAAAACCAGCCGAGACCCATAGCCTGCAGACGCTGCACACCATCCTGTCCACGGGCTCCCCTCTCAAACCCCAGAGCTACGAGTACGTCTACAACAGCATCAAGAGCAACGTCCTGCTGGGCTCCATCTCGGGTGGAACGGACATAGTCTCCTGCTTCATGGGGCAGAACTTCACCGTGCCAGTGTATCGTGGGGAAATCCAGGCACGCAATCTGGGAATGGCTGTGCAAGCCTGGAACCAAGAAGGGAAGCCAGTCTGGGGTGAGAGCGGGGAGCTGGTGTGCCTCAAACCCATCCCCTGCCAGCCGACGCACTTCTGGAACGATGAGAACGGCAGCAAATACCGCAAGGCCTACTTCTCCACCTTCCCAGGGGTATGGGCACACGCAGATTACTGCAAAATCAACCCCAAGACTGGAGGAATAGTCATGCTTGGCAGaagTGATGGCACCTTGAATCCAAATGGAGTTCGATTTGGAAGCTCAGAAATCTACAACATTGTCGAAGCTTTTGAGGAAGTGTCCGACAGCCTTTGCGTTCCCCAGTACAACAAAGACGGCGAGGAACGGGTGATTCTGTTCCTGAAGATGGCCCCCTCCAAAACCTTCAGCCAGGAGCTCGTGAAGAACATTCGCCAGGCTATTCGGCTGGCGCTGTCTGCCCGCCACATCCCCGCCCTCATCCTGGAGACTCGAGACATTCCGTTCATCGACTTAAAGCGGCTTCAGCGTCGTAAGAGTGAGATAaaatattcagatattcagatgctatttctgcttttcacaaacacagaaccGAAGTACACGATAAGCGGGAAGAAGGTGGAGGTGGCCGTGAAGCAAGTGATCGCAGGAAAGGAGGTCACCCAACGAGGAGCCTTCTCCAACCCCGCCTCGCTAGATCTCTACAAGAACCTTCCTGAGCTCCAGGGCTTCTGAAAGCAGCGTCGGCGAGGACCTAAGACTCCACCGGGACATCTTGTTTCATGGGACTATTCAAAGCTGGTGATTCAAATCATCCAGACTCGGAAAAACACATGACCCCGTCCACATTGAGGGAAAGATCTGGTTTGGTTTGGCACCATGGCAACACAGGAaaacgtgtgtatatataacttttttgtttttgtttttttaatatatatatacatttttttattgtacatttcatagtttcctttttttctttagctTAGTGCTGAGGCAGTTTAACATGCCCTGTTAAGAAAAGAATAATcccaaaacaattaattaatatatgatatTGCTGATGAGTACACTTCCTGGAAGCTAAAACAACCTCAAAGGCCCCATAGATAAACCAGCTATCCATTCTGAAGTGAGTGGTGAGAAAATACAAGTGAACGCTTTTAAATGATGGGAAAATGTCTTAAGCCAGATCCTTCCCTCCTTTCCTGTACTAAGGCAGGTTTTGAGTACGTAAGATGATAGAAGCCCCCACCCTCatagaaaaacagaatgaaaactcCTTCTTAGCTTCAAAAGTAATTTGGAAACACGGGAATGTGTGTGCAAATGCTCTGTTTGAAGTGGCTGCTAACTAAGGGGAGGATTTGGACAGTGTAGGACCTAAAGCCAGGGGCCAGTCAGATATGTGGGGCCCCTTGCATAAGCTCAAACTCTCAGTCAGCAGGTGAAGCTGTAGAATCTGGAAAGTCCGGGTGACGTTTTCTTCTTCGAAGTTTTTTGTCAACCTTCAGTTTTTTATCCACACTAACACACCGGCAAATCGTCCCGTCGTCGAGTCATGGCCTTGTTGTCCTGACTTTTTAAAGCAGCGCTGTCTCGGAGGCCCGCCCTTAGTCCACAGGGTCCGTAGAACTTCAGTGCCAAACGGTGCCAGAAAAGCGCGTTGCTAAATCGAGGGTGGAAACAGAACCTGAAAAGCTGCCCCCTATCTCCGACTATGTATTGTGAAATTCCGttactttcaattattttacatgtttatcaCTAAACTTGGATTGGATTGTTTGACACaaatgatcttttttttttaaataatgtattgaatacTGTACATGGTGTAGGACTACTCCAAATCTACTCTCAAAACTCAAACTTGAAACAGCATATGTGTTatcttttacaatgtttttggATGTGCTTTCATTGTACTTTTGTGGATTTTGTACAGGTAGCAAAAGGAAAAGCTGTATATACTGCTTAAGAACTAGGAGGCCAAGCAAATGAGACATCACATTGTAAAGCAGATAGTTTGCATGTCACACTGGAATcatttgaaacatgtttgtgtgagtttttttgttttgtttaaatctttAGAAACtctataatttttatttaagaGGCACGGATGTCCAGaaaatgattcaattaaatgcataattcatATGGTCACTTGGAAAAAAGGGTATAGATTTTATAGCTTAATTGGACTTAGCAGTGCAAACATGTCGTGTTCTCTGTAACCACAAAGTTTATGGAAATATACTCCTCTCTGCAAGCCGGGCTGAGAACTGAATCTGAAACGAcatcctaatttaaattaatgcaaaatgacaaaaaaaaggtGAGAGGGAAACTCAGTGACAGTACTGCAGACACGTATACTAAAAACACAGGGGCCCCGATGGAAAAGATTCATATCGACAAACTGGAACACAGAAAAAGCAATCGCAAACCTGAAAAGCTTTTTGCTCCAGTGTAAAATGTGCAGCTTTCTATCTTCAAGTATTTCTAGTTCATATACCAAAACTCTTcagagaaaagtaatacatgaACAGAAATGACATAATATACAATCCATAAGTGCTTTTTGTCTGGCTACACCTCTTGCCAAATGTGCGTTACTCTCAGAAATACCAGGAGTATGTTGTGGGCCGAACATAAAAATTGAGATGGAGATGTGATTTGTTGTGCCGATTCAGCCAACGTGCCCCCATGGTTGGGCCTTGAACCCCGGATCCTTTGGCATTCTTCCTGTTTGGAAACGAGGCGTTTTAACACCAAAATACCAGCCCCTGGGGCAGGAAAGTAGAAAaggcttttattgtttttattttttctgaaacctttgttttattttttcttcaaagagCAGGGATGTTGCTTGTACGTGTGATTGTAGCTGTGCATGTGTCACGCTGACAAAAGCCCATACAGCTTTAATCGTTATCAATGTGTGAACCAATGTTGGCAAAGAGTCTTCTTTTTTATTcccgtttttcttttttcctttcaaggTATTGTGTCACAGTGCTGTCTTGCTGCAGATGCTGTTTGTACCATTGAGTGTTGAAactctgtaaatacatttgatcagtgttgtttttgattgtgtttttctctgcGTCGAGGAAAGCCCAATCAATGCTGTCTGATGTCATCGCAAATGCTACTCTCGTCTTCTTCTGACCAAAGTTTCAGGACTGGGCTCTTGTGATCAGGGAACAGACACCACAAAAAACAGTCTCTTGTTAGACCCAGACCATGTTCAGATGCATTCTGTATGATACACTATCCATTGTGTGTCCAGAGCTCTCAGTACTGTGATAcaaatgccttttttcttttcaaaatcataaCACATTGACTAAGCAATAGGTAACTGTTCAATGTTTGTAAGTGTTAAAATCcccatactttttttttttaagtacaatttTTAATATTGAAGGTGAATTTTATTTGAGAGTTGTCATTTCtcctttgtttttactttaattttttaacttttattaatgtgcatcaaatgtaaatgtgcttCGTGGTCTATGTGTAGACTAGATGAAGATAGTCTTTCACGGTAagatatatgcatatatatatctatatatacatacatatatttgattatatacagtactgtatctgTCAAGAG

Function

symbol description
aacs Predicted to enable acetoacetate-CoA ligase activity. Predicted to be involved in positive regulation of insulin secretion. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in liver; nervous system; neural tube; and optic vesicle. Orthologous to human AACS (acetoacetyl-CoA synthetase).

NR:

description
PREDICTED: acetoacetyl-CoA synthetase

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0030729 acetoacetate-CoA ligase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K01907 AACS, acsA; acetoacetyl-CoA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018613 True 5180 mRNA 0.46 19 15379743 15418462

Neighbor

gene id symbol gene type direction distance location
AMCG00018610 NA coding downstream 87658 15237160 ~ 15292085 (-)
AMCG00018609 NA coding downstream 202073 15171962 ~ 15177670 (-)
AMCG00018604 NA coding downstream 421857 14957253 ~ 14957886 (-)
AMCG00018605 cdc45 coding downstream 431476 14939774 ~ 14948267 (-)
AMCG00018606 LOC106580435,LOC105014311,LOC108265487 coding downstream 456736 14899812 ~ 14923007 (-)
AMCG00018612 bri3bp coding upstream 3453 15421915 ~ 15428751 (-)
AMCG00018614 mapk1,LOC107386038,LOC103371039 coding upstream 107828 15526290 ~ 15535846 (-)
AMCG00018615 NA coding upstream 134242 15552704 ~ 15569734 (-)
AMCG00018616 top3b coding upstream 151810 15570272 ~ 15586730 (-)
AMCG00018621 LOC104964243 coding upstream 214984 15633446 ~ 15636944 (-)
G117501 NA non-coding downstream 165312 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 399359 14979041 ~ 14980384 (-)
G117441 NA non-coding downstream 522148 14856420 ~ 14857595 (-)
G117438 NA non-coding downstream 544018 14833856 ~ 14835725 (-)
G117432 NA non-coding downstream 595430 14780287 ~ 14784313 (-)
G117646 tbx1 non-coding upstream 604136 16022598 ~ 16025073 (-)
G117710 NA non-coding upstream 876368 16294830 ~ 16296445 (-)
G117809 NA non-coding upstream 1735540 17154002 ~ 17155261 (-)
G117853 NA non-coding upstream 2047672 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 2096395 17514857 ~ 17515120 (-)
G117377 NA other downstream 641431 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 858868 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 1116589 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 1651873 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 2122493 13253085 ~ 13257250 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 80200 15498662 ~ 15518315 (-)
G117784 NA other upstream 1590436 17008898 ~ 17009301 (-)
G117823 NA other upstream 1807628 17226090 ~ 17256271 (-)
G117899 NA other upstream 2184894 17603356 ~ 17603848 (-)
G118075 NA other upstream 3047906 18466368 ~ 18474245 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000071_01452292_01490229 AACS coding CI01000071 null 1450564 ~ 1490912 (+)