AMCG00018614 (mapk1,LOC107386038,LOC103371039)


Basic Information

Item Value
gene id AMCG00018614
gene name mapk1,LOC107386038,LOC103371039
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15526290 ~ 15535846 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018614
TCCTCGGTCAGCCAGCTGCTAAAATGGTCTAACCTCCTTTTCTGCTCTCCAGCTCTGCGTACGACCGAGACAACAAAATCCGAGTGGCCATCAAGAAGATTAGCCCGTTCGAGCACCAGACGTACTGCCAGAGGACCCTGAGGGAAATCAAGATCCTGCTGCGCTTCAAACATGAGAATATCATCGGCATCAATGACATCATCCGCGCTCCCTCCATCGACCACATGAAAGATGTATATATTGTACAGGACCTGATGGAGACAGATCTCTACAAACTCCTAAAGACACAACACCTGAGCAACGACCATATCTGTTACTTCCTATACCAAATCCTAAGAGGGCTGAAGTATATCCACTCTGCCAACGTCTTGCATCGCGACCTGAAACCCTCTAACCTGTTGCTGAACACTACTTGCGATCTGAAGGTCTGTGACTTCGGACTCGCTCGCGTTGCCGATCCCGATCATGACCATACTGGTTTCCTCACGGAGTACGTGGCCACACGCTGGTACAGGGCCCCGGAAATCATGCTCAATTCTAAGGGTTACACCAAATCCATCGATATATGGTCTGTGGGCTGCATTCTGGCTGAAATGCTGTCCAACAGGCCCATCTTCCCTGGAAAACACTATCTGGATCAGCTTAACCACATTCTGGgcATTCTGGGCTCCCCTTCGCAGGAGGACCTGAACTGCATCATCAACATCAAAGCCAGGAATTACCTGCTGTCCCTGCCACTCCGAAACAAAGTGCCCTGGAACCGACTCTTTCCCAACGCAGACCCCAAAGCATTGGACTTGTTGGATAAGATGTTGACCTTTAACCCCCACAAGAGGATTGAGGTGGAGGAGGCCCTGGCTCACCCATATCTGGAGCAGTATTACGACCCCTCAGACGAGCCCGTTGCAGAGGCACCGTTCAAGTTTGACATGGAGCTGGACGACCTGCCCAAAGAGACCCTGAAAGAGCTGATCTTTGAAGAGACCGCCCGCTTCCAGCCAGGCTTCCGCTCCTAATCCTCTCCCAGGGCTCTCCTGGACTGATCTTGCTACGATGCCGTCGTTCCTCTGGCCAGCTTTTCCTCGATGATGTGCTATGGTTTTGTCTTGGCTTGCCCATCCAGACTCCCCCAACTCCGACAAAACCCCAGCATTTGTCCTCAAACCAGAATGGACTCTGCCCACCATCCTCGTCActtcattatattatttcctttcttctctGTGTATTTTGACTTAAAATCAAATTCCTTTGCGTGACCATGGTTTGATGGGGAAGTGCAAACACTGAAAGCCTGCATGAGGTGTTGAGAGTTGATGGTGTGGCCCTGACTTCACTGCAAATTCAGTATCGGGGGGCTGGAATTGGTCCCTGTCATTTTATCATTAGAGTCATTAGCACTTTGGATTTTCTTCTTGGAGAATCACCCATTACATATCTAGATCAAACCTGGGATTAAAATTGATGCGCCTTCATGATCTAGATttctatttaaatgattttgatttGAGGGGCAGCAGATAAGAGTCTGGAATAAAGAGCATAGTGAAGAATCATTCTCCCACTTTCCTATAGATATAGTAGATGGGGTTGTGCATTAAAATGCAGGAGGGATTAGATTGATTTAATTCACATTAATAATCTGATTTGCTGTAGACATAATCTAAATTTTAAAGCAAGCTCCCAAACCATCTTTccaaaaaacaacttaaaagcACTCGTCTTTTTAAGCAGTGCATTATCGAAGTGCCATTCTctaatctacacacacacacacacacacacacacacacacacgtgtgtgtTTTGCACAGCATATCACTTCCCATGATAAACTGTCCGTGGTCTAACACAGGGAGTTGTCATTTGCATGTTTTCTGCCTCGTTCCCATTCAGCAAGGGGCCATAATGACGTGTAGAAAGTCACATGTTAAGAAGTACCCACCTCCCAGACCACTGAAATGCTTTGCTGACAGTCCAGTGTGTACTCCTCTCGCGCTCTGGTCATTGCAAAGCCTGATTCTCCAAACCTTTATTTGCAGGGGCACGTGCTCAGTCAAAcggcctttttttatttgtactggTCGGCGAAATCTtgtgaaaacatgcattatGTTACCTTAGATACTTAgcattcattcaaataaaaattaaggAAGTCTGAATGCTGCTATCCTTATGGCTGTTCATGTTTTCACACCACTTAGGAGGTGGGGGGTCAATGGGAAAGTGGAACCTTAATAGGTCACTCTCAGACCTGGGTATCCCCTTGGGCGAGAGGTCTAGTTCCGAAGCTGTAGCACTTTCTTGCTTGTCTGTTTCGCCTAAACCCCATCCATCAGTCGGTCATCGTGGATACCTTAAACCTAGAGTGAGCGTGGAGGCGTTTGGCAAAATGGGCACCAAGAGCGACAGCCCCTCATCACTGCCGCAACCTCTGCTGGTTGATGTTATGAAGTTTGGCTGAGCCCATCTCCTTCACTGCATTACCCTGTCAGATGCAATCAAACAGTTGTTGGGTGccgttttatttttccccttccaGACTTGGCAAAGCTGAAAGCAAACGACTGAACCACTAgcacagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgaaATCAGTTGTGCAGTTCAGTAACcgctttcttattttatttgattcctTCCCCATCAAGTGCAGTGCCTCCTCCTTTCTCCCTTTTGTGGTGAGTTTTCTATTGCCTTTGTAACAAAAGACTATGCCCTCGCATGActgttaaatacaaacattttcaaaaatgttaaaaaattaaaaaaaacatttaaaaagctttctATACAAAGACTGTGTAAAGTGCCACGCTCCTCTGGGCGTTCCTGACGGGAAGCTCATTTCTGTATTTCCCTACCTTGTGCTTTTTAGTGCAGGGTTGTTatatggttttcttttgttgtttttttctgactagCTTGATTTGGTTAACAGTTAAGTTATAAACAGGAGCAaacattgatatttaatttgcagGACCCGCAGAGGGTATCCCGTTATCTGCCTGATTTTAAGATCTGCGTTTGTCTGCTGCACTAACTGAGCTACTGTCTAGGATGAACCCTTTGGCATCTTTTATGCCTACTGGGTGGATTATTGGGTTTGTTGCAGTACAGAATGGGGGTGGGGTGAGGAATTAGGTACTGGTAATAAACCATAGAAAACCCTTCCAATTCCCcagcaagatttatttttatttaggtgtacaaattaaaaataataatttgtgttcAGCTCCTGCAATAGTACATCCATTCTTCAATCAGTACAGCACTGCAGAGCTGCTTTGAGGTGGGTTGTGAAGTGGTTTTGGGAGGGGGGGCTGTATTGTAGTGCAAAGAAAACCAACATTTTGATAAACTGTTCCTGCTGCTTTaaagttttagatttttatttttaagacagcATACACTGCACTTGATTCTTTTGATGCTGTGTACAATGCACTGGGTGTCAGTCAGTGCTGAGTCAGAGCAACAGTAGTGGGGTCTTAATTTGGGAGTAAATTAAGGGAGGAGTGAGCAGGCTCTCTGGAGACACTCTTCAAATCCTGTTGTAAGATAGCTTCTGCTGGCTTCTTGTGTgatctgtctgtttttgtgCCTTTATTAGTCTTGTACAACAAGATTTCTTGTGCAGCTTTTTTCAGTTGTTCAGTTTGGGGATCAGTTTGTGATTGCagttattctttttaaaattgatcGTTATTCTCATGGttatgtacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagcaaaaaaaa

Function

symbol description
mapk1 Predicted to enable MAP kinase activity. Acts upstream of or within gastrulation. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including EVL; brain; cardiovascular system; retina; and superficial blastomere. Human ortholog(s) of this gene implicated in Noonan syndrome 13; adenocarcinoma (multiple); pulmonary hypertension; and renal cell carcinoma. Orthologous to human MAPK1 (mitogen-activated protein kinase 1).

NR:

description
PREDICTED: mitogen-activated protein kinase 1

GO:

id name namespace
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007369 gastrulation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG:

id description
K04371 ERK, MAPK1_3; mitogen-activated protein kinase 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018614 True 3822 mRNA 0.44 8 15526290 15535846

Neighbor

gene id symbol gene type direction distance location
AMCG00018612 bri3bp coding downstream 97539 15421915 ~ 15428751 (-)
AMCG00018613 aacs,LOC107672615,LOC108255473 coding downstream 107828 15379743 ~ 15418462 (-)
AMCG00018610 NA coding downstream 234205 15237160 ~ 15292085 (-)
AMCG00018609 NA coding downstream 348620 15171962 ~ 15177670 (-)
AMCG00018604 NA coding downstream 568404 14957253 ~ 14957886 (-)
AMCG00018615 NA coding upstream 16858 15552704 ~ 15569734 (-)
AMCG00018616 top3b coding upstream 34426 15570272 ~ 15586730 (-)
AMCG00018621 LOC104964243 coding upstream 97600 15633446 ~ 15636944 (-)
AMCG00018622 ube2l3,ube2l3b,ub2l3,LOC106562742,LOC107599129,LOC105014760 coding upstream 112673 15648519 ~ 15657455 (-)
AMCG00018626 pi4ka,LOC108425210,LOC107751806 coding upstream 216490 15752336 ~ 15784546 (-)
G117501 NA non-coding downstream 311859 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 545906 14979041 ~ 14980384 (-)
G117441 NA non-coding downstream 668695 14856420 ~ 14857595 (-)
G117438 NA non-coding downstream 690565 14833856 ~ 14835725 (-)
G117432 NA non-coding downstream 741977 14780287 ~ 14784313 (-)
G117646 tbx1 non-coding upstream 486752 16022598 ~ 16025073 (-)
G117710 NA non-coding upstream 758984 16294830 ~ 16296445 (-)
G117809 NA non-coding upstream 1618156 17154002 ~ 17155261 (-)
G117853 NA non-coding upstream 1930288 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 1979011 17514857 ~ 17515120 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 7975 15498662 ~ 15518315 (-)
G117377 NA other downstream 787978 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 1005415 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 1263136 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 1798420 13645368 ~ 13727870 (-)
G117784 NA other upstream 1473052 17008898 ~ 17009301 (-)
G117823 NA other upstream 1690244 17226090 ~ 17256271 (-)
G117899 NA other upstream 2067510 17603356 ~ 17603848 (-)
G118075 NA other upstream 2930522 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 3002572 18538418 ~ 18547368 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000071_04534337_04569325 MAPK1.S, MAPK3, MAPK1, MAPK1.L coding CI01000071 null 4534337 ~ 4569325 (+)