AMCG00018615


Basic Information

Item Value
gene id AMCG00018615
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15552704 ~ 15569734 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018615
GGGCCGCAGGGCAGGCGGGGTGGCGGTGCGGGTGTCGGGCAGCGGAGACACGGTCTGCAAACCCGCAGATGAGGAGTGCGCGACTCGCGGATCCCCGGAGCTCCACTGCGCTGCTGCACTTCGCCAAGGAGGTTGGGCTCGGTGCCCTGTACTGACTGGCCCAGAACTCAATGAGTCGCCCAGGGCCACTGTAAGGAGCCACTGCAGGCAAAGTGACAATGGGAACCGAGGGAGAGGCGGCCCAGCGCTTCCTGGAGGAGTTTGTGAAGGAATTCCCCAACCCACTGGGCCCCGAGGAGCCCCTGCCTCTCAGCCCCCTGAGCAACACAGTCAGCCCAGCTGAAGTCCAGGGAGAGAGCCTGGATCTGGCCCTGCGACTGCTGAGAGCCAGGAATGCCCCGCCAGCGCTGGGTGCCGCCCTGTCCCACGCCGCTGTGTCTGAGCTGCTGAAGAGTGACCTGTCCTCCTTCCACACCAGCCCAGCACCCGAGCAGGACTGTGACTTGTTGAAGTCGGAGCCCCTACAGCGGAGCTTCCTGAACCGACTGCGCGAGGTGTGCAGCGCGTGGCAGTGGGAGCCTCCCCCCGTCCCGTCAAGACGGCGCTACCTGCTCACCTCTTCCCACGCCATCCGCAACACACGCCGGAAGATGGAGGACCGGCACGTGGAGCTGTGCGACTTCGACCGACTGCTTGGCCTGCAGGACAACACCGAGCGTGCATACTTCGCGGTGTTCGACGGCCACGGTGGGGTGGACGCAGCCACATTCGCCGCCACGCACCTGCATGTCAGCCTGGGCCAGCAGGAGGCGCTGCGGAGCGACCCTGCCATGGCTCTGCAGAAGGCCTTTGCTCACACGGACGACTTGTTCAGGGAGAAAGCCAAAAGAGATGCTATGCTGGTGCGACAGGGCCAGGCCGTCACCCTGATGGAGCCCCACAAGCCTGAGAGAGAGGACGAGAAGCGACGGATAGAGGACTTGGGCGGCTGTATAGTGTTCATGGGATGCTGGAGGGTCAACGGCACATACGCGGTGTCCAGGGCGATCGGTGACTTTGACCAGAAGCCCTACATCTCCAACGAGGCGGACTGCAAGACTGTCCCGCTGTCCGGCGCGGAGGACTATGTGCTCCTGGCCTGCGACGGTTTCTTTGACATCGTGCAGCCGCAGGAAGTTGCCGGGCTGGTCCTGGAGCACCTGCAGCAGAGTGGGGGACAGGGTGTGGGGGCTGCCCAGAGCCTCGTGGCCCGAGCCAAGAGCTGCGGCTCCACCGACAACATCACCGTGCTGCTGGTTTTCCTCCGGGACCCCCAGGACATCCTGCGCGAGGCTGCGGCGGGAGGGGGGCGGCAGGCCGAGACCCAGCCGCCCGAGTTCGTCTTCTTCCGAGACAACGGAGAGAGCGGACAGATGGAGGCGGTTACTGCCGAGACGAGTCGGAGCACAGGAGGAAAAGCAGAGGAGGGAGCTAAAGAACAAAGCCAATAAACAAACGAAAATTGTTTAGAATGAGAAAAGagaaccacagaaaaaaaacgCAGGATTTCTGGCTTTTGCACTGCTTGTTTTCGCTCGCTGTTGCCAACCTTTGGAAATAAGTGTTCTTGCGGTAACTGTGACGAATAACTGCAGTGGTTGGTCATTTGCGATAGTTGGTTATTGGCCACAGCTCCTGGTCTCGCAGGGAGGCAGCCATGTAAACTATATGCCGATTGTGTGTTACTGAGACAAATCTGCAGcaccaggggtgggggggtacagCCCTGCCTGTTGCCTCGTACTGAGCTGCCTCCTGCGTCTGTGAACTGAGGTGCTAAGAGGTTTCAGCATCCAGTTACTATTGCCTGGCCTCCCTCAGAGACCGATTTAATAATGCTTTATGCGTGTGGTGAGAGCTTTGTTATACTGTGCTggtgttcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtatttgtttttttaataagctttttgtttgtttgtctggtaTCCTTGTGATCTGTGAGCTGTGCTTTAAATAACTCCCTTTATTCTGTCCCTAAATGTGTCAGGTTAGTCGGAAAAGGCTTAATGACACTTCTGTTCTTGCGCAGCAGAGGCAGCCTTGATGTCTCTCTGTGCCTCAGGAACCCCAGAGAGATCAAAAACagtgttataaaataaagaGCTGGGGCTGTTTTGAGAAGAACCAAAGATAAGCGATTGGCGTGATGTGTTTGACTTACACCTGGCCTGTAGCTCTGCTGTAATTGAACACGATGCCTTGTGTTATGTGCCTAATGGGTTACATGTAAGGGAAGTGTCTGAAGTGTTTGAATACCATGCATATTTAGATCTGCAATGCTAAGTAACAGTAACAGCTAATACACAATAATAGGGCCACTAAAGGAACAATcagataatgtttttaaataattatgagtTTTAAATCTGATATTAATTTCTTCCAGACCGCTCActgtaatatttacatattgattGTCATTATTGGCTTTTTAAGTGTTGCCTTGACTCCAGAGCTGCTGTGGTCCCTTGTCCTCTGTCTGAATTGAGTTCATCTGAGAGTCACGCTCTGTGCTGCAGGGGAGTCTGACTGGGCAGCACTTGATTGGAAGTGTGGCACAGTAATGTGGAGTCTGCATATTCTGCGATCGACAAGAATTTAATCTGGAAACAGATCTGGGCCCGAGCCTTTCATCCCCGCACGGCTCCATGCCAATGTCAACGTTTCGTCTGATCGGAAATGCTAGGTTGGTGACATCACTTTGCTGGAAATGCTGCTGTGATATCTGTTTCCTAATGCTGTGCATCTGTATCTGGCAAGCTCGGAGAGAGTGGCTGCCAGGGAGCACAATCCCCATAGTGCTATGCTGATCTCTGACAGAGACGGGACACCAGCAGCCGTTGCATTCATGACTTGTATGGCAGATTTGGTCATCTGGCccttaattaattttaatcaagCATTTGGATACTAGTATATCCTGGTAAGGCCATGAAACTGAGTTGCACAGACTGTGGGCGTAATGACACAAGGTAGGGGTGTGGCATCCCACTGTGGGCGCCCACTTTCAGGGCTGCAGGGCGAGCTGATTTCTGTCCCCATAAATTCTTTTTACTGAATGTTACCTGGACGATAAGGCAAATCCCCAGTTCTCTCGTTCTGTGAAGGGTAGGTCCACAGCCCACAGCAGTCCAGCCAGGCATGACGGGAGCTGCCCGTCTCCGGTATAACACAAACTCCGGAGCAACAGAGGTCAGACAGTATGACTTgacctttaaaaatattgttgaCGTGGCCCGTCCTCGGCTTGTCTTCCTCTGTGCCTTGTTTGCTACGGCTAAGGTACCCCTGGTTTTGAGATCACGGCTGCATCGCTCTGGatgttttctcttctgtggcatcgagagggagagagggtttgGTTTTGGCAGTATTGCACCACTGGGTTTTGAGAGGGGGATTATGTGGTTCAACTcctgtattttgtctttttgttttgaactgtTGAGGTTACCAAACAACCATTGTGCAACCAACTGCCGTCTTCCTAAATGCcttggaattaaaaacaaacatccccTCACAGGGTTTACCTCTTGCACCATTTGGTGTGGTGTGCACAGTATCTAAACAAGCCTTTTTGCAGTGTAGGTTTTATACAGTATTAATCTTTCAGTATATtccttttgtatgttttttaatgttttatgaatgtatgcGTGATATGTGTTGGTAATACATGATTATCAAGgagtattttaacattttcaaaaatacaaaacccatGTGTCATCACATTCGGGTGGGGGgtagattgtattttttaatttaaacttaggtgtgtttaatttaacatttattatatatacatcattaagttaaaaatataaatgatttgtTACAAGCCATTTTAATACAGGTCATCTTTTTAAGTGCCTTAACCAGATCTGCTAATGACTGTATTCATGTTACATGTATTTCTTCCAAGTAGGCATTGCTTGCTAAAATCTAATTTgcaggaaaaaaagaacaaccCGAAAATACATTAACTTAGTGCTgatagttttgtgtttgttgcttgttacattgtatttataaagaCTATGgtattatgtttatatgtaacTTGTTATTATTGGCCTGCTGTGTTATTGATGTGCTTGGAAGAATAAGGATTCTGCCGACACACGTGGCTCTCAATGTTCCCATAATGCCACTTGTATGGCCACTTTCCTGTGGCCCTGGAGGAGTTTCCCCAGACACCCATGGGCTTTGGTGCATCTACATGCACATCGTTAATACTTCAGATTTATCTGTACCTTCTGGTTTACACCGAAGGTCACATTTGCAGGACTGCTTCATGTCAAAGACCTGTTGCAGCTCTTGTGAGGCCAAACGCACCATCACACATGATGTATGTTAATGCGTCAGATTGCGCTCTGTGAAAGCGTGGCCCAGGTGTTGCTTTTCGGAATGGGACAAGAGCTTCAAAACCGAGGCCTGTTGATGCTGACAACATCGTGTGCAAGAATTGGGACAAAGATGTGTCCTGTGTGATGAGCAGTCCTTATCTGAGTTCTGCGTATTGCTTGGACTGTAAATTGAGGAGATCGCATCAAGTTGTATGGTGTGTTCTTCTGTTCTTCCCTATGTGCAGTGTAGCCTGTGCGGAGGTACTGAATAGTATTAATGTCATTACTTTTCTAAAGGCCCAGCAGGAGGGAAAATTgccatatgtattttttaatttataaagcaTCTGTAACCATTTAATACCATGTATAACCATGCTAAATACCACGAAACTGCCATTTTCCTTGCCTGTACCACTATAACCTGTTATTGTTGAAATCCATATTAAACCTCAGCTATGGCAACAGCTGATGCTTTCTTTGGTTCATGTACTGCTATCCCTTACAGAACTGATTTGTACCAGTAAAGTGTTACATCAAGGTGTATGCTCTTGTGTTACCTCCCCAAAAgtcttatttttaatgcaatgccacccaccccccccaccccatcgtATATTAAAAGTAACCACAATCTCCTATATCTTCTCCCTTTATTACAATCTGATGTTTTTGACTTGTTCAGGGTAGAGCCAAACTGTCTGTTAAACTGGCAATATTATGTTGAACCACTCGGGGGCAGCAACAGAGATAAATGTGTTCTCCCGGCTGTGGTTCAGCATTGACGTGAACCTTAACGTGTTCTGCTAATTGTTGTCAGCATCTAATTAAATGCTTTGATAACAAACTCCCCTGTGCGATTCTGCACATGTGAGCCTGTGCTTACTTACAGCCGCTGCTCAAAGAAATGAAACGAATAGATTTTAGCCCCCAGTGGAGATTTCCTGGAAGTAATCCTACTTGTAAAACTCCTGTTAATGTAGTAAAATAAGTTTTCACTGTAGGCTGGTAGCCTaaatcacagtttatttttcaaaaacattcaatGCCACAATATTCTTAATGATAGGTGCATCAGATGTTCCAATTTTCTAACCAACTAATCTTGTATTGGcatgaatacaattaattgattaattgggtTGGGGGGTGGAAGCACCAAAATGCAGATAGAATGTGGTTGTGCTCTTTGAAAGACTGGGGGGCATCCGGAGCTCTCTGTCTGGGAGATGACTGACAGTGATGTCTAGCTCCTGGATGCAGGGAGAGTGGGAAGGGTGTTGCAGCACGATCATGTTTGACTTCTCTAAAGCTCTGAGTCATATTTCCTGTAACAAGGGGAAACAAGCAGATAAGTCGGTCAtttctggaaaagaaaaaagacaaagcaaaacCTCTTCAGAGGCTGGGTGGATTTTGAGCCGCAAGGTGGAGGCTTTGGAACAATTGAACTGATGCTAAAACGctttggaaagaaagaaaaagtgggTGGGggcatgcaaacaaaaaaaataaagacaagtgTCTGAAGCGA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K17502 PPM1F, POPX2; protein phosphatase 1F

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018615 True 5958 mRNA 0.48 8 15552704 15569734

Neighbor

gene id symbol gene type direction distance location
AMCG00018614 mapk1,LOC107386038,LOC103371039 coding downstream 16858 15526290 ~ 15535846 (-)
AMCG00018612 bri3bp coding downstream 123953 15421915 ~ 15428751 (-)
AMCG00018613 aacs,LOC107672615,LOC108255473 coding downstream 134242 15379743 ~ 15418462 (-)
AMCG00018610 NA coding downstream 260619 15237160 ~ 15292085 (-)
AMCG00018609 NA coding downstream 375034 15171962 ~ 15177670 (-)
AMCG00018616 top3b coding upstream 538 15570272 ~ 15586730 (-)
AMCG00018621 LOC104964243 coding upstream 63712 15633446 ~ 15636944 (-)
AMCG00018622 ube2l3,ube2l3b,ub2l3,LOC106562742,LOC107599129,LOC105014760 coding upstream 78785 15648519 ~ 15657455 (-)
AMCG00018626 pi4ka,LOC108425210,LOC107751806 coding upstream 182602 15752336 ~ 15784546 (-)
AMCG00018627 NA coding upstream 225447 15795181 ~ 15825447 (-)
G117501 NA non-coding downstream 338273 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 572320 14979041 ~ 14980384 (-)
G117441 NA non-coding downstream 695109 14856420 ~ 14857595 (-)
G117438 NA non-coding downstream 716979 14833856 ~ 14835725 (-)
G117432 NA non-coding downstream 768391 14780287 ~ 14784313 (-)
G117646 tbx1 non-coding upstream 452864 16022598 ~ 16025073 (-)
G117710 NA non-coding upstream 725096 16294830 ~ 16296445 (-)
G117809 NA non-coding upstream 1584268 17154002 ~ 17155261 (-)
G117853 NA non-coding upstream 1896400 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 1945123 17514857 ~ 17515120 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 34389 15498662 ~ 15518315 (-)
G117377 NA other downstream 814392 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 1031829 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 1289550 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 1824834 13645368 ~ 13727870 (-)
G117784 NA other upstream 1439164 17008898 ~ 17009301 (-)
G117823 NA other upstream 1656356 17226090 ~ 17256271 (-)
G117899 NA other upstream 2033622 17603356 ~ 17603848 (-)
G118075 NA other upstream 2896634 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 2968684 18538418 ~ 18547368 (-)

Expression


Co-expression Network