AMCG00018616 (top3b)


Basic Information

Item Value
gene id AMCG00018616
gene name top3b
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15570272 ~ 15586730 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018616
GTGTCATGGCCGCCTCCAGCGTAGCTATAGCACGATTATTTCTCAGCTCTTGATTAAGGATGCCCCCCTTTTGAGCCACAGAAGCGAGAGAGAAAAGTAGTTTTAACACCAAACCTCTGCACAAAATAAGACCAGCAAGACAGCCGTCCAGTTTGCCATAATGAGGACTGTTTTGATGGTGGCCGAGAAGCCGTCTTTGGCTCAGTCCATCGCAAAGATACTCTCCAAAGGCAGCTGCTCCAGCCGCAAGGGACTAAACGGAGCATGCTCAGTCTACGAGTACACCGGAAGCTTCATGGGACAGTCTGCTCGATTCAAGATGACGTCGGTCTGCGGCCATGTGATGAGTCTAGACTTcatagggaAATATAACAACTGGGACAAGGTTGACCCTGCTGAACTATTCAGCAAAGCAcccacagaaaagaaagaagccaATCCGAAACTCAACATGGTCAAGTTCCTGCAGGTCGAAAGCAAAGGATGTGACGTGGTGGTCCTGTGGCTGGACTGTGACAAAGAAGGGGAAAACATCTGCTTTGAGGTCCTGGATGCCATCGAACCCTACATGAACAAGTCATACGGCAGCGAGAAGACGGTGTTCAGAGCCAAGTTCAGCTCCATCACCGACCAGGACATCTGTAATGCCATGAACCGCCTGGGGGAGCCCAACCGCAACGAGGCCCTGTCTGTGGACGCCCGGCAAGAACTGGACCTGCGCATCGGCTGTGCCTTCACCAGGTTTCAGACTAAATACTTCCAAGGCAAGTATGGCAATCTAGACTCCTCCCTGATATCCTTCGGCCCCTGTCAGACTCCCACGCTGGGATTCTGCGTGGAGCGCCACGACAAGATCCAGTCTTTTAAGTCGGAGCCCTACTGGGTGCTGCAGGCCAAGGTGTTCAAGGGCAAAGAGAGTCCCATCACGCTGGACTGGGACCGGGTGCGGGTCTTTGACAGGGAAGTTGCTCAGATGTTTCTCAATATTGCAAAGACCGCAAGAGAGACCAGGGTTGAATCCGTAAGCAAGAAGGAGAAGGCCAAGCAGAGGCCCCAGGCTCTGAACACAGTTGAAATGTTACGAGTCGCCAGCTCAGCCCTTGgaCTGGGGCCTCAGCACACCATGCAGATAGCAGAGCGTCTTTACACCCAGGGCTACATAAGCTACCCTCGTACGGAGACCACGCACTACCCCGAGAACTTCGACCTCAAAGGAACGCTGCGGATGCAAGCTAACAACCCTTTCTGGGCGGACACAGTGAAGGCTTTGCTCTCGGAGGGCTTGAATCACCCCAGGAAGGGCAGTGACGCTGGGGACCACCCCCCCATCACCCCCATGAGACCAGCCTCAGAGAATGAGCTAGGTACAGACGGCTGGCGTCTCTATGAGTACATCACCAGGCACTTCATTGCCACCGTCAGCCAAGACTGCAAATACCTCCAGACCACCATTTCTTTCAGCGTTGGCACAGAGACTTTCACATGCACCGGAAAGACTCTCATTTCTGCTGGCTTCACTGAGGTCATGCCTTGGCAGAGTATCCCCGACGAGGAGAGTCTTCCGTCCTGCGAGAAGGGAGATGTCTTCACGGTGGAAGAAGTCAAGATGCTCGAGAAACAGACCAACCCTCCGGACTACCTGACTGAGGCTGAGCTCATCTCACTGATGGAGAAACACGGAATAGGAACTGACGCCAGTATCCCTGTGCACATCAATAACATCTGCCAAAGGAATTACGTGACTGTGGAGAGTGGCCGCAGACTCAAACCCACCAACCTGGGCATTGTTCTAGTGCACGGCTATTACAAAACAGACGCGGAGCTGGTGCTGCCCACGATCCGCAGCGCTGTGGAGAAGCAGCTCAACCTGATTGCTCAGGGCAAGGCCAACTTTCAGCAGGTCCTGCAGCACACCCTGGACATCTTCAAGAGGAAGTTTCACTATTTTGTCGACTCCATCGCCAGCATGGACGAGCTGATGGAAGTTTCCTTCTCCCCCATCGCTGCCACAGGGAAGCCCCTGTCTCGCTGCGGAAAGTGCCGTCGCTTCATGAAATACATCCAGGCAAAGCCCAGTCGTCTGCACTGCTCTCACTGTGACGAGACCTACAGTCTGCCCCAGAATGGCGCCATCAAGCTGTACAAGGAGCTGCGCTGCCCCCTGGATGAGTTTGAGCTGGTGCTGTGGACATCGGGGTCCAGGGGCAAGAGCTACCCACTGTGCCCCTACTGCTTCAGCAACCCGCCGTTCAGGGACATGAAGAAAGgcatggGCTGCAACGAGTGCACCCACCCCTCCTGTCAGCACTCTCTGAACTCGCTGGGGATCGGCCAGTGTGTGGAGTGCGAGAACGGGGTGCTGGTGTTTGACCCCACCTCGGGGCCCAAGTGGAAGATGGCGTGCAACAAGTGCAACGTGGTCGTCCACTTCTTTGAGAACGCCCACAAGGTGCGGGTGTCTCCAGACAGCTGCGACTCCTGCGAGGCCTCCCTGGTCATTGTGGACTTCAACAAGGCACGCTCACCGCTACCCGGGGACCAGATCCAGCACACGGGCTGCTCCTTCTGCGACCCTGTCTTCCAGGACCTGGTGGAGCTCAAGCACGCCACCATGAGGCACCCCATGCACAGAGGCGGCCAGGCCAGGAGGCAAGGGGGGCGGGGCCGGGGGCGGGGTCGCAGACCGGGTGGCAGGGGCAACCCCAAGAAACCCAAAGACAAGATGGCGGCCCTAGCGGCCTACTTTGTGTAATGAAGTCAACTTGCTTAACGCAGGCTGTGGTTTACATGCCGGTGAATTCGTCTTGACAGCACTGTTGTGACCTATTTAACGGAGTTACGGtcacagttttaatttgttttgttttatgtttgaatacaaattacacacaaattGACTTGACAAAAAAGATCTAATGCAGAAAGTGTTAAATGAGTAAAGTATTAAGCAAAATGCTCTAAAATTGTAATCCAGGTGTACTACCTTAAAAGAAGTCATGACACTACCCCTAACATCAGGATGTCTCGCCAACATGTAAACACTGCCACAGTAAACGCACACCTTgggtgcatttgtgtttgttttttagttgtaaccatgaggaaaaaaaataaacacattttt

Function

symbol description
top3b Predicted to enable DNA topoisomerase activity. Predicted to be involved in DNA topological change. Predicted to be active in nucleus. Orthologous to human TOP3B (DNA topoisomerase III beta).

NR:

description
DNA topoisomerase 3-beta-1 isoform X1

GO:

id name namespace
GO:0006265 DNA topological change biological_process
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03165 TOP3; DNA topoisomerase III

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018616 True 3124 mRNA 0.54 18 15570272 15586730

Neighbor

gene id symbol gene type direction distance location
AMCG00018615 NA coding downstream 538 15552704 ~ 15569734 (-)
AMCG00018614 mapk1,LOC107386038,LOC103371039 coding downstream 34426 15526290 ~ 15535846 (-)
AMCG00018612 bri3bp coding downstream 141521 15421915 ~ 15428751 (-)
AMCG00018613 aacs,LOC107672615,LOC108255473 coding downstream 151810 15379743 ~ 15418462 (-)
AMCG00018610 NA coding downstream 278187 15237160 ~ 15292085 (-)
AMCG00018621 LOC104964243 coding upstream 46716 15633446 ~ 15636944 (-)
AMCG00018622 ube2l3,ube2l3b,ub2l3,LOC106562742,LOC107599129,LOC105014760 coding upstream 61789 15648519 ~ 15657455 (-)
AMCG00018626 pi4ka,LOC108425210,LOC107751806 coding upstream 165606 15752336 ~ 15784546 (-)
AMCG00018627 NA coding upstream 208451 15795181 ~ 15825447 (-)
AMCG00018629 slc25a1b,LOC107665756,LOC107751928,LOC108247150,LOC107704153,LOC107706761 coding upstream 244452 15831182 ~ 15848951 (-)
G117501 NA non-coding downstream 355841 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 589888 14979041 ~ 14980384 (-)
G117441 NA non-coding downstream 712677 14856420 ~ 14857595 (-)
G117438 NA non-coding downstream 734547 14833856 ~ 14835725 (-)
G117432 NA non-coding downstream 785959 14780287 ~ 14784313 (-)
G117646 tbx1 non-coding upstream 435868 16022598 ~ 16025073 (-)
G117710 NA non-coding upstream 708100 16294830 ~ 16296445 (-)
G117809 NA non-coding upstream 1567272 17154002 ~ 17155261 (-)
G117853 NA non-coding upstream 1879404 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 1928127 17514857 ~ 17515120 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 51957 15498662 ~ 15518315 (-)
G117377 NA other downstream 831960 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 1049397 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 1307118 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 1842402 13645368 ~ 13727870 (-)
G117784 NA other upstream 1422168 17008898 ~ 17009301 (-)
G117823 NA other upstream 1639360 17226090 ~ 17256271 (-)
G117899 NA other upstream 2016626 17603356 ~ 17603848 (-)
G118075 NA other upstream 2879638 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 2951688 18538418 ~ 18547368 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030892 top3b coding NC_007116.7 CM002889.2 13211452 ~ 13251907 (-)