AMCG00018618



Basic Information


Item Value
gene id AMCG00018618
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15637974 ~ 15648175 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00018618
GTTTGTTGTGaagtccttctctctctcagatccggatcaaatgcattggtacatttgatccagatcagtgGTATCACggctacactgccatttgatcaggatcaactgtcAGCAGCCCCAGTGGTCTTTGCATGTGAACTAGCATGTAAGTCCAAACTTTAAGTCTATTGTGTCCTACAGCATTGAAGGACACAAGTTTATCCAATGATGTCAAAAACGAACAGTCAGCTGTTAGCTGTTCACGAGAATTGAGGCCGCCTCCGCCCAGGCCGGCGTGTGTGGGTTTGAACCGGGGCCAGAGCGCAAGGAGGAGCCCCTCTCTGCCTGGGTGCCTCCATGGTCTGAAGGTTGAACAGTTAGCGCCCGTCAGCAACAGCTTTGACAAAAGCAGTGAGCTCCAGGGAGAGCAGCCTCGACCGACAGGAGCTGTGGGTTTAATCCCCATATTAAACTGGTTTGGTATAGTCCCATTTGGATTCCAGACACCACCTTTCAGATTACATCGTACCCTACATGCTCCGGCCAGTGAGGATGCCGCAGCCCAGGCTCAAGCTGGTGGTAACCGGGGATGATTTTGGATACTGTCTGCTGAGGAATCGAGGCATTGTGGAGAGCTTCCAGGCAGGGGCAATCTCTAACGTGTCGCTATTGGTGAACGCAAGCTCTGCCCACGATGCAGCTGAGCAGGCAAGGAGGTATAACATTCCAATCGGGCTCCACGCCAACCTATCTGAGGGGCTCCCGGTGTGTGAACGGCTCCAGAAGAGATCCTCTCTCTTGAATGAAGATGGATTCTTTCATGGGAAAATGGGCTTCAGGAAGGCGTTACGAAATGGGCAGCTGAAGATGGCAGAGGTGGAGCTGGAACTCAGGGCACAAGTTCAGCTCTTCTGCGAACTGACCGGCCATTTACCTTATCACATGGATGGGCATCAACACGTTCACGTCCTGCCAGGGGTGCGAGAGGTGTTTGCCCAGGTGCTGTCCGACCATCAGATCCGATTCACGCGTGTTCCTGTAGAGCCGGGGCTGCACGCCTGCTCCTGGCTGCCCCCACATCTCAAGGACTTCTACACACAGGTGGAAAAGGACGCTCTGGAATCTGTCGGGATCTTTCTTAAGCACGGCATCAGGTGGCCTGATGCCTACATTGGCCTCACAACTATGGGAAATCACATGTCGGTTGCCAGCATTAAAGCAGCTATTTGCAAGGCTATAGAGGTGCCATCCGCCCAAGAGAACGGTGTGACCACCCCCCGGTGTGAACTGTCGTCGCTGTTTGGGATCTCCAAGCAGGACCGGCCTCGTACAGTGGAGCTAATGGTCCACCCAGGGTACCCCAGCCTCCCCTACGAAGGAGGCTGTGGGGAGGGCGCCGACGATTTTTCGCAGTCTTTGGACCGCAAGCACGAACTGGACACTCTGACGGACCCTGCACTGCTGGAGTTCTACAAGGAGAAGAAAGTGCAGCTGTGTGCTTTCAAAGACCTCTGAAATGAGTCCCATGTGGCAGGGCCCAGCAAGGCCCACTTTTGAGTATCTAGTCCCTGTTGAATTCTCTACCTGAAAAACCTTAACGGGTTGTTGCACAGCCACAGTGCAAAAAGTAGAGCTCAATATATgctatatattactttttttaaatcactgatgcacattttaacTCCATTGGATCGTGGAAGCATAATGAAACAACTGGCTGCTATCCTTTCATATTTTACCCAGTGATATAATTCCTTGAAccttaatatttttatatttaaaaatgggtcccaaaaatgtattttaaattatttgaatttttgtggtctgtaatattgttttttataaattatgcaacatgggtttagaaagaggaatacttaaaaaaaaaaaaaaaggcatggTATTTATTAACTGCCAAAACAAATGACATGCTTTTATAACACACAATACTAGGAAAGGGGGTACAGActgtaaaaaaattaacaataacCATTAGGATAAAAAGAACTCTCTATTGTACActttgaataaaacattaacttttATCCATTGACAGGGAAATGCACCTGCTGTGAAGTTTGTATTGTTCGTCTACATTTGAATTCTGAAATGTCTGTGAATTAAACTCTCTCGTAATTGCCAACAATTGcaattgggaaaataaaactaGATCATAGTGGGGTCTTCGGCACAGAACCAAAGTGCTATTTCTACAGCCAGCTTGAAGGTGCTGCAGTTACAGCTGTCAGTCAAGAGCTTTGCAGAGAGGCCTAGTAAACACAATACCTCAAACAGTAAACTGCTGTCCAGAAG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00018618 True 2298 mRNA 0.47 8 15637974 15648175

Neighbor


gene id symbol gene type direction distance location
AMCG00018619 NA coding upstream 52887 15583593 ~ 15585087 (+)
AMCG00018611 ppil2 coding upstream 169592 15430284 ~ 15468382 (+)
AMCG00018603 ufd1l coding upstream 683711 14949636 ~ 14954263 (+)
AMCG00018608 cldn5,LOC103357131 coding upstream 710450 14927162 ~ 14927524 (+)
AMCG00018600 NA coding upstream 803910 14831500 ~ 14834064 (+)
AMCG00018620 NA coding downstream 20640 15668815 ~ 15669669 (+)
AMCG00018624 NA coding downstream 34280 15682455 ~ 15691741 (+)
AMCG00018623 NA coding downstream 124134 15772309 ~ 15777303 (+)
AMCG00018625 NA coding downstream 137718 15785893 ~ 15790897 (+)
AMCG00018630 tbx1,LOC102781442 coding downstream 364112 16012287 ~ 16025098 (+)
G117557 NA non-coding upstream 10255 15627339 ~ 15627719 (+)
G117521 NA non-coding upstream 108633 15492246 ~ 15529341 (+)
G117380 NA non-coding upstream 738056 14855079 ~ 14899918 (+)
G117389 NA non-coding upstream 840824 14796531 ~ 14797150 (+)
G117388 NA non-coding upstream 843735 14793885 ~ 14794239 (+)
G117574 NA non-coding downstream 45038 15693213 ~ 15695253 (+)
G117573 NA non-coding downstream 47251 15695426 ~ 15698865 (+)
G117660 NA non-coding downstream 435178 16083353 ~ 16121445 (+)
G117768 NA non-coding downstream 1100694 16748869 ~ 16749971 (+)
G117783 NA non-coding downstream 1360723 17008898 ~ 17009246 (+)
AMCG00018602 LOC102789415 other upstream 656269 14954564 ~ 14981705 (+)
G117383 NA other upstream 849841 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 860864 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 1225695 14408958 ~ 14412279 (+)
G117178 NA other upstream 1290233 14345090 ~ 14347741 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 1420037 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 2332965 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 3071031 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 3179422 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 3246160 18894335 ~ 18908956 (+)

Expression



Co-expression Network