AMCG00018621 (LOC104964243)


Basic Information

Item Value
gene id AMCG00018621
gene name LOC104964243
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15633446 ~ 15636944 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018621
GTTTGAAAGCACGTCAGATGTTCCTGCcttggaggaaaaaaagaaagaaagacagagaaattAAAGCTACGCCGGCAACAAACAATGAGGTTAAAGCGGGTTTTCCACGAGCAGATCTTTATGACATTGTTTCTCCTCCTGGTCTGTGTTTCATTGCAATGCCAGTGCCGTGAGAGCGAGTTTAACTACGTCACATGCGGCTCCTTGGTTAAATTACTCAATATAAAGCACAACGTGAGGCTGCACTCCCACGACGTCAAGTACGGCTCAGTGCCTGACGATGCCAACAGCTACTGGCGCATCCGTGGGAAGCCGAATGCCCCCTGCCAGCGAGGAGTGGCCATCAAATGTGGCCAGTCGATACGCCTCACTCACATGAACACGGGGCGCAACCTCCACACACACCACTTCGTTTCCCCGCTGTCTGGCAATCAGGAAGTGAGTGCATTTGGGGAGAATGGGGAGGGGGATGATCTGGACGTGtgggcagtgcagtgcagtgggaTACACTGGGAGCGCGACGATGATGTGCGCTTCAAGCACGTCGGCACTGATGTGTTCCTGAGCATCACGGGCGAGCAGTACGGACACCCCATCAAGGGCCAGAGGGAGGTGCATGGCATGTCTAGCGCCAACTACAACAACTACTGGAGAACCATGGAGGGCGTCTTTATCAAACCCAGTGCGGAGCCCTTAAGGCACGATGAACTGTAGCCCCATGGACCGCACttcagggattttttttatttttatatatatatatatatatatatatataaaaataatggttttgttctgttttgttttttcaactcTTCCTGGCTGAATctacatttccaaaaaaaaaatccttctggAATGCAAAAGGAAATTTAAGGTCAAGTGATACAAAATTTTgctgtccatttttttttttttttcttttatttgaatatgaaCAAAGTAAGTAAAATTCCAAATGCTTGTTACACCCTCATTTCAAGATCTCATGGTGGGTGTTGGGTGTAATAAAGGCTGGTTTCCCTCGGCTTTTAGCTCTTTTGCGGAATTTGCTCCACTTGTTGACGTTGTTTGTGCActtttacagcttttaaaattgGGACGAAGCACTGCAATGAaccaaaagcagaaaaacacccatGTGGTAGTAATATCGATCACTagtacttgtttttgttttttaatctagtTTAACTGTTTTGcgtcccttttttttttttttttttctctcttagaCTTCAAACAGTCAAATATAAATCTGTCAGTTTCTGCTGCTCAGCCTTAAATTGTGACCGTGTGTAGGTCGGTCTCAACTGTCAGATGTGACAACAATCATGAAGGACACCCTGTCATTTCTCCCTGTATGTTGTGGTGACCTGTTACAACAGATAGTAATGGAATGTTTCCCAAAATATGaacttttatttatagatatactaatgtttaattatcataataGACTCTGCTCCATTTTACTTTCTATGTTTTGACTATTTCAGCGAAAAGGTTTCTGTTCATATTCCACTCTACAGTCTTTCTAGTGGAGCTGCAGGATGGTGGGTTGGATAAAATCTGTCCATGTCTGTACAGGGGTGAGTCATGTGCAACAGACCGTGGCTGCGGCTTCACTTTGGAAATAACTTTCCAAATAAGTATAGTTTCTCAGATGAGACAATCACAGTTCAGTGACTACTATGATTTTGCTTAGTTTTGCCCATTTCTTAAAGTCATGGAAATCACAAGGGAGCACTTTTACCGTCCTTGAATatacaagaaattaaatgtcaatATAAAAGGGAATAGGTGGGAGGCCTGTCTGGTCAGGTGTGGCTTAatcatccccccccccccccccccccccat

Function

NR:

description
PREDICTED: stromal cell-derived factor 2-like protein 1, partial

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018621 True 1863 mRNA 0.43 3 15633446 15636944

Neighbor

gene id symbol gene type direction distance location
AMCG00018616 top3b coding downstream 46716 15570272 ~ 15586730 (-)
AMCG00018615 NA coding downstream 63712 15552704 ~ 15569734 (-)
AMCG00018614 mapk1,LOC107386038,LOC103371039 coding downstream 97600 15526290 ~ 15535846 (-)
AMCG00018612 bri3bp coding downstream 204695 15421915 ~ 15428751 (-)
AMCG00018613 aacs,LOC107672615,LOC108255473 coding downstream 214984 15379743 ~ 15418462 (-)
AMCG00018622 ube2l3,ube2l3b,ub2l3,LOC106562742,LOC107599129,LOC105014760 coding upstream 11575 15648519 ~ 15657455 (-)
AMCG00018626 pi4ka,LOC108425210,LOC107751806 coding upstream 115392 15752336 ~ 15784546 (-)
AMCG00018627 NA coding upstream 158237 15795181 ~ 15825447 (-)
AMCG00018629 slc25a1b,LOC107665756,LOC107751928,LOC108247150,LOC107704153,LOC107706761 coding upstream 194238 15831182 ~ 15848951 (-)
AMCG00018628 cltcl1,LOC106585059 coding upstream 226137 15863081 ~ 15894824 (-)
G117501 NA non-coding downstream 419015 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 653062 14979041 ~ 14980384 (-)
G117441 NA non-coding downstream 775851 14856420 ~ 14857595 (-)
G117438 NA non-coding downstream 797721 14833856 ~ 14835725 (-)
G117432 NA non-coding downstream 849133 14780287 ~ 14784313 (-)
G117646 tbx1 non-coding upstream 385654 16022598 ~ 16025073 (-)
G117710 NA non-coding upstream 657886 16294830 ~ 16296445 (-)
G117809 NA non-coding upstream 1517058 17154002 ~ 17155261 (-)
G117853 NA non-coding upstream 1829190 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 1877913 17514857 ~ 17515120 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 115131 15498662 ~ 15518315 (-)
G117377 NA other downstream 895134 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 1112571 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 1370292 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 1905576 13645368 ~ 13727870 (-)
G117784 NA other upstream 1371954 17008898 ~ 17009301 (-)
G117823 NA other upstream 1589146 17226090 ~ 17256271 (-)
G117899 NA other upstream 1966412 17603356 ~ 17603848 (-)
G118075 NA other upstream 2829424 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 2901474 18538418 ~ 18547368 (-)

Expression


Co-expression Network