AMCG00018628 (cltcl1,LOC106585059)


Basic Information

Item Value
gene id AMCG00018628
gene name cltcl1,LOC106585059
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15863081 ~ 15894824 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018628
ACTGAATGAAACCAGTGAATCAGACACTCACAGATACGAGCCGGACCGACTCATTAATTAGGACTAAATCACCTATATGcattttgggttttttttttttaagaaaggaCTTTTAAATAAAGACTAGTGATATTTCCTCCTGCCCCTCTCCCCCCGGTCCCGGTTTCCTTTCCTCTGCACAGAAAGCAAGAAGAATGGCACAGATCCTGCCAATACGATTTCAGGAACATCTGCAGctGCAGAACCTGGGAATTAACCCAGCCAACATTGGGTTCAGCTACCTGACAATGGAATCTGATAAGTTTATCTGTATTCGGGAGAAGGTTGGGGACCAGGCCCAGGTAGTGATCATTGACATGAACGACCCCACCAATCCAATCAGGCGGCCTATATCTGCTGACAGCGCCATCATGAATCCGGCCAGCAAGGTCATTGCCTTGAAAGCCGCCAAGACACTTCAGATATTTAACATTGAGATGAAGAGTAAAATGAAAGCGCACACCATGACTGAGGAGGTGATGTTCTGGAAATGGATCTCGGTGAACACCGTCGCCTTGGTAACGGAGACAGCCGTGTACCACTGGAGCATGGAGGGAGACTCGCAGCCGCTGAAGGTGTTTGACAGACACGCCAGCCTGGCTGGCTGCCAGATCATCAACTACAGAACTGACGAGCAGCAGAAGTGGCTGCTCCTCATTGGCATTTCTGCACAGCAAAATCGTGTGGTAGGCGCTATGCAGCTCTATTCTGTGGACAGAAAAGTTTCCCAGCCCATTGAAGGACACGCAGCCGCTTTTGCTGAGTTTAAGATCGAAGGAAATGCTAAGCCATCGACACTCTTCTGCTTTGCTGTACGAAGCCAGGCTGGAGGCAAGCTGCACATAATAGAAGTGGGTCAGCCTGCAGCTGGAAACCAACCTTTTGCGAAGAAAGCCGTGGATGTCTTTTTCCCCCCGGAGGCTCAGACAGACTTCCCTGTGGCAATGCAGATTGGTACCAAACACGGAGTGATCTACCTGATTACCAAGTATGGCTATATCCACATGTATGACTTGGAATCGGGGGTGTGTATCTACATGAACCGCATCAGTGCAGAAACCATCTTTGTGACGGCTTCTCACGAGCCTACCTCTGGAATCATAGGAGTCAACAAGAAAGGGCAGGTGCTGTCGGTTTGCGTTGAGGAGGAGAATATCGTCAACTACGCCACCAATGTCCTGCAGAACCCAGACCTGGGGCTGCGCATGGCTGTCCGCAGCAACCTGGCAGGGGCAGAGGAGCTGTTCGCCAGGAAATTTAACACACTCTTTGCTCAAGGAAGCTACTCAGAGGCTGCTAAAGTTGCCGCTTCTGCACCAAAGGGAATCCTGCGCACGGCTGATACAATCAGGAAATTCCAGACAGTCCCCGCACAGCCCGGACAGGCATCGCCcctgctgcaatattttggcaTTTTGCTCGACCAGGGACAGCTGAACAAATTTGAATCACTGGAACTCTGCCGTCCCGTCCTGCAACAAGGCCGCAAGCAGCTCTTAGAGAAATGGCTGAAGGAAGACAAGTTGGAGTGCTCAGAGGAGCTGGGGGACCTGGTCAAGACAGCGGATCCAACCCTGGCCCTCAGCGTCTACCTCCGGGCCAATGTTCCCAGCAAGGTTATCCAGTGCTTTGCAGAGACAGGACAGTTTCAGAAAATAGTTCTCTATGCCAAAAAAGTTGGCTATACTCCAGATTGGGTTTTCTTGTTGAGAAATGTCATGCGGGTGAGTGCTGAGCAAGGCTTGCAGTTTTCTCAGATGTTGGTCCAAGACGAGGAGCCCTTAGCCAACATCAACCAGATCGTGGACGTGTTCATGGAGAATAACCTGATCCAGCAGTGTACCTCCTTCCTGCTAGACGCCCTGAAAAATAACCGCCCCTCTGAAGGACACCTGCAGACTCGCCTCCTGGAGATGAATCTCATCCATGCGCCACAAGTCGCAGACGCTATACTCGGAAACCAAATGTTCACCCACTACGACCGTGCGCACATCGCCCAGCTATGCGAGAAGGCCGGGCTGCTGCAGCGAGCCCTGGAGCATTACACGGACCTTTACGACATCAAACGAGCGGTGGTCCACACCCACCTCCTCAACCCTGAGtgGCTGGTGAATTACTTTGGCTCTTTGTCAGTGGAGGATTCAGTCGAATGTCTGCGAGCGATGCTGTCTGCGAACATCCGGCAGAACCTGCAGCTGTGTGTACAGGTGGCGTCCAAATACCACGAGCAGCTTGGCACCAACAACTTGGTGGAGCTCTTCGAGTCCTTCAAGAGTTATGAAGGGCTGTTCTACTTCCTTGGGTCTATTGTAAACTTCAGTCAGGACCCAGACGTTCACTTCAAATACATCCAAGCAGCGTGCAAAACTGGCCAGATTAAAGAGGTGGAGCGGATCTGCCGTGAAAGCAATTGCTATGATCCAGATCGTGTCAAGAACTTCCTCAAGGAAGCCAAGTTAACTGACCAGCTACCTTTAATAATTGTGTGCGATCGCTTTGATTTTGTCCACGACTTGGTACTCTATTTGTACCGTAACAGCCTACAGAAGTACATTGAAATCTACGTCCAGAAGGTCAACCCAAGCAGGCTTCCAGTGGTTATTGGCGGACTGCTTGACGTGGACTGTTCTGAAGACGTGATTAAAAACCTGATCATGGTGGTGCGGGGACAGTTCTCCACTGATGAACTGGTAGCAGAAGTGGAGAAGAGAAACAGACTGAAGTTGTTGCTGCCTTGGTTGGAATCGAGAATCCACGAGGGCTGTGAGGAACCCgctacccacaatgcactggcCAAAATCTACATCGACAGTAACAACAATCCCGAGCGTTTCTTGCGAGAGAACCCCTTCTATGACAGCCGCGTAGTCGGAAAATACTGTGAGAAAAGGGACCCGCACCTGGCCTGTGTGGCCTATGAAAGAGGTCAATGTGACTTGGAGCTTATTAAGGTCTGCAATGAGAACTCCCTGTTCAAGAGTGAGGCGCGCTACCTGGTACGCAGAAAAGATCCCGAGCTGTGGGCCAATGTGCTGGAGGAGAACAACCCGTTCAGACGCCAGCTTATTGACCAGGTTGTGCAAACGGCTCTGTCAGAAACGCAAGACCCAGAGGAAGTGTCTGTGACTGTGAAGGCCTTCATGACGGCTGATCTGCCCAATGAGCTGATCGAGCTGCTGGAGAAGATAGTCCTGGACAATTCAGTCTTCAGTGAGCACCGAAACCTCCAGAATCTACTGATCCTGACGGCCATTAAAGCAGACCGCACACGAGTGATGGAGTACATTAACCGTCTGGACAATTACGATGCTCCCGATATTGCAAACATCGCCATTAGTAACGAGCTGTTTGAAGAGGCCTTTGCCATCTTCAGGAAGTTTGATGTCAACACTTCAGCCATCCAGGTGTTAATTGAGCACATAGGGAATCTGGACCGAGCCTACGAGTTTGCCGAGCGGTGTAATGAGCCAGCGGTGTGGAGCCAGCTGGCCAGAGCCCAGCTTCAGAAGGACATGGTGAAGGAGGCTATCGACTCCTACATCAAAGCTGACGATCCCTCTGCATACATGGAAGTGGTCAAAGCAGCCAGTAAAAACAATAACTGGGAAGATCTGGTGAAGTTCCTGCAGATGGCCCGAAAGAAGGCAAGAGAGTCCTATGTAGAAACTGAGCTGATCTTTGCCTTGGCTAAAACCAACCGTCTCTCGGAGCTGGAGGAGTTTGTTAGTGGGCCGAACAACGCTCACATCCAACAGGTTGGGGACCGTTGCTATGACGAGAGAATGTACGACGCAGCCAAATTACTGTACAACAACGTCTCCAACTTTGCCCGCCTGGCATCCACTCTGGTACATCTGGGGGAGTACCAGGCAGCAGTGGACAGTGCACGGAAAGCCAACAGCACCAGGACCTGGAAAGAGGTGTGCTTTGCCTGTGTGGACGGGACCGAATTCCGGCTGGCTCAGATTTGCGGCCTGCACATCGTCATCCATGCCGATGAACTGGAGGAGCTGATCAGTTACTATCAGGACCGAGGGTATTTCGAGGAGCTGATCGCACTGCTGGAAGCGGCTCTGGGTCTGGAGCGCGCACACATGGGGATGTTCACCGAACTGGCCATCCTCTACTCCAAATTTAAACCCCAGAAGATGAGGGAGCATCTGGAACTCTTCTGGTCCAGAGTCAACATTCCCAAGGTTCTCCGTGCTGCAGAGCAAGCGCACTTGTGGGCTGAACTGGTCTTCCTGTATGATAAATATGAAGAGTATGATAATGCAATAATCACCATGATGAATCATCCTACCGATGCCTGGAAAGAAGGGCAGTTCAAAGACATCATTGCTAAGgtggCGAATGTTGAGCTCTATTACAAAGCCCTGCAGTTCTATTTGGATTACAAGCCGCTGCTAATCAACGATCTGCTGACCGTCCTGTCTCCTCGGCTGGACCACACCAGATCCGTCAGTTTTTTTGCAAAGgtCGATCAGTTGCAGCTTGTTAAACCCTACCTGCGATCAGTACAGAGTCACAACAACAAGGGGGTCAATGAAGCCCTGAATAACTTGCTTACGGAGGAAGAAGATTTTcagGGTTTAAGAGCATCAATCGATGCCTACGATAACTTTGATAACATCAGCCTTGCCCAAAGACTAGAGAAACACGAGCTGATTGAATTCCGACGTATTGCTGCTTACCTGTACAAAGGAAACAACCGCTGGAAGCAGAGCGTGGAGCTGTGCAAGAAGGATCGTCTGTACAAGGATGCCATGCAGTACGCCGCCGAGTCAAAGGATGCAGAGCTGGCCGAGACACTGCTGCAGTGGTTTCTGGAGGAGGGCAAGAAGGAGTGTTTTGCTGCTTGTCTCTTCACCTCCTACGATCTGCTGCATCCCGACGTGGTGCTGGAGCTGGCATGGAGGCACAACATCATGGACTTTGCTATGCCTTACTTCATCCAAGTAATGAGGGAATACCTTACCAAAGTTGATGAGATTGCCGAGAAGGTCGATAAACTGGACGCTTCAGAAAACCTGAGGAAGACTGAAGAGGAAGTGGCAGAACCAACCCCAATAGTGTttgGTCAGCAATTAATGTTGACAGCCGGTCCCTCTGTTGTACCACCGCAGCCTGGATACCCTGCCTACAGCTATGCTGCCCCAGGCTTCACTCAACCGGCCTACGGATTCAATATGTAAATATCACCCCTCCTGACAGAGCCTTTCTGCTATGCCATCCTGACAGCGCTCCTCTGTCTGTAAGAAACGCAGGACTTTGAGGCACAGTATTTAATTTGGGCCTAAACGCCAACCCCATGCAGCATGAAGACAACTCTCTAAAGGACAGCCTGTTACTGTCAGTATATTTATTACTATGaataatactatattatattactgttacatttcaacttttaaaggaaaagtgcagctttgttgtttttgttttttgtttttttatcattgtattttatgtccTGAATTTACAGCACTGATCTACAGAGGAAAATGgcaggaaaaaatatttcagagcAAATTCATTGGGTGAGCCTTTCACTATGAAGTACTGTAAGGTCTGTTCCTTAAGTGTCACATAGGGAGGATAAGGTCAATGTTTCTcagattttgtttgtctgtttaagtcatttaaatatttaaattaatcgagatagatattttaaaaaaacatcttgtgCAACTGGTAATTTTTGCTTCTATGAAAACGTAACTCTCCtggtagcttttttttttttttttttaacgagaGACAACACTAACAACGTAATTAGCAGAGGTGGTACTGCataacaatttgaaaataaacctgAACATCACTATGGAGGAAGTCCGTTCCAGGCCGGCATTCTGTAGTGCATCGCCACGCTTTGATCTTTTCCTCCTTATCGTTTTTTTACCAAAAGCGGTTAGGGCTTCTTgatttttgctttaaatgtgtattaaataacCAATAACGGTACATAAGTTCAATACAAGATTAGGTAGATAGtgtttatgaaaatatgaaatggagGAATAAAATGTACCAGTGTCTGTGCATGTGCTGCCAGATTAATGTTTAATGCTATAACAATGCAAAAAGGAGCACAATTAATTTTCAATGTGATTAAAAAGCATCTGGAGTGTGATCAATGTTTTGTAAAGATCTTTAATGTATGGTGAAAGAGTTGGTTTCTGCCTCTGAGATCAACAGACAAAAAGGGATGGTgaagaaaaaatgttaaatgttacagATGCTTTGAAGAATGCaaaagaggatgtgtgtgtgcgtgtgtgtatatatgtgggtgtgtatataccatacatgtatatttacacacacacacaaacacacgtgtGCCACTTTTTCAATATACTATAATCCTTTTAATGTACTGAagataatgtataatttatggtAATGAAACTTGTGCTATTCCTAATTAATCTAAGTCCACTATAATGTAAAACCATATGTATTGTCTATAGTGTATGGTTGTAGTCCTAagtgtaatgattttttttttttttttttttttaagaaactaaaactaaacaaaaactataaaaaaccTTTTCTTCAGCACGTCTGCTTGCCGGAAAAAACtgtctttgttctgtttttaaagtaGCAGCAATGGGAATGTCGAAATTATTGGGATCTTGTCCCTGGCAATCAGTTGTGTTGAATGGATTTGAGAATGGCGCTGAAGTGGATTTCAGCAGGGAACTGTGCTgctctgtctgtcttgtgtCCCACACTGCACACGGTGTACAGACGTTTTCAGGATCAATTTGGGGGCATCAGGTTTCCGGAAAAATATGAGCTGTAAAGCTTTCCCTTCCTACCTGCACAAGTTATGCCTTCAGAAGGATCAATAAAGTTTACACATATTGTTCTGTTGCTGTGTAttatttccagttttgtttacaatacaaACCAGCACATGGATGAAGGTGGGCTCATTTCAGGTGTGCCTTGATCACACTCTTCCATGTGTAGCCTAAAATGAGCTCAGCATTGTGCTTGCAATTCATtctttgttgatttattattttattgctaaGGACTACTAAAttgaaagttattttgtttgGGTTCTGTGCTGCTTAGCTGAACTGgcatttgtgttcatttatttatatatacactcacctaaaggattattagga

Function

symbol description
cltcl1 Predicted to enable clathrin light chain binding activity and structural molecule activity. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in clathrin-coated pit and cytoplasmic vesicle. Predicted to be part of clathrin coat of coated pit; clathrin coat of trans-Golgi network vesicle; and clathrin complex. Orthologous to human CLTCL1 (clathrin heavy chain like 1).

NR:

description
PREDICTED: clathrin heavy chain 1-like isoform X1

GO: NA

KEGG:

id description
K04646 CLTC; clathrin heavy chain

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018628 True 7205 mRNA 0.47 33 15863081 15894824

Neighbor

gene id symbol gene type direction distance location
AMCG00018629 slc25a1b,LOC107665756,LOC107751928,LOC108247150,LOC107704153,LOC107706761 coding downstream 14130 15831182 ~ 15848951 (-)
AMCG00018627 NA coding downstream 37634 15795181 ~ 15825447 (-)
AMCG00018626 pi4ka,LOC108425210,LOC107751806 coding downstream 78535 15752336 ~ 15784546 (-)
AMCG00018622 ube2l3,ube2l3b,ub2l3,LOC106562742,LOC107599129,LOC105014760 coding downstream 205626 15648519 ~ 15657455 (-)
AMCG00018621 LOC104964243 coding downstream 226137 15633446 ~ 15636944 (-)
AMCG00018631 NA coding upstream 137876 16032700 ~ 16050889 (-)
AMCG00018634 NA coding upstream 165882 16060706 ~ 16081326 (-)
AMCG00018633 arvcf coding upstream 195161 16089985 ~ 16096022 (-)
AMCG00018632 arvcf,LOC102781924 coding upstream 221141 16115965 ~ 16143336 (-)
AMCG00018640 trmt2a,LOC107687689,LOC106580466,LOC107672731 coding upstream 395010 16289834 ~ 16293685 (-)
G117501 NA non-coding downstream 648650 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 882697 14979041 ~ 14980384 (-)
G117441 NA non-coding downstream 1005486 14856420 ~ 14857595 (-)
G117438 NA non-coding downstream 1027356 14833856 ~ 14835725 (-)
G117432 NA non-coding downstream 1078768 14780287 ~ 14784313 (-)
G117646 tbx1 non-coding upstream 127774 16022598 ~ 16025073 (-)
G117710 NA non-coding upstream 400006 16294830 ~ 16296445 (-)
G117809 NA non-coding upstream 1259178 17154002 ~ 17155261 (-)
G117853 NA non-coding upstream 1571310 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 1620033 17514857 ~ 17515120 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 344766 15498662 ~ 15518315 (-)
G117377 NA other downstream 1124769 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 1342206 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 1599927 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 2135211 13645368 ~ 13727870 (-)
G117784 NA other upstream 1114074 17008898 ~ 17009301 (-)
G117823 NA other upstream 1331266 17226090 ~ 17256271 (-)
G117899 NA other upstream 1708532 17603356 ~ 17603848 (-)
G118075 NA other upstream 2571544 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 2643594 18538418 ~ 18547368 (-)

Expression


Co-expression Network