AMCG00018629 (slc25a1b,LOC107665756,LOC107751928,LOC108247150,LOC107704153,LOC107706761)


Basic Information

Item Value
gene id AMCG00018629
gene name slc25a1b,LOC107665756,LOC107751928,LOC108247150,LOC107704153,LOC107706761
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15831182 ~ 15848951 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018629
ATGTATTTTCCAAGGTTCCTCCAGTGCATCTCTTCTCCCAGCAGGCAGCCCAAGCAGCTCCTCTGTGGGATTGCTGGTGGAATAGAGATCTGCATCACGTTTCCGACAGAGTATGTCAAGACACAGTTACAACTGGACGAGAAGGCCAACCCACCACGTTTCAAGGGCATCGTGGACTGCGTGAAGCAGACGGTTGACGGCCATGGCGTGAGGGGGCTCTATCGCGGGCTCAGTTCCCTGCTGTACGGCTCCATTCCCAAAGCGGCGGTCAGGTTTGGGATGTTCGAGTTTCTCAGTAACCACATGCGGGACGAGGCGGGCAAGCTGGACAGCACGAGGGGCCTGATCTGCGGCCTTGGGGCAGGGGTGGCCGAGGCTGTGCTGGTGGTGAAGTTCATTCATGACCAGTGTTCATCCAATCCGAAGTACAAAGGCTTCTTCCACGGGGTGAGGGAAATTATCCGACAGCAAGGGCTTAAAGGGACATATCAGGGTTTAACTGCCACAGTATTGAAGCAGGGGTCCAATCAAGCAATCCGATTCTATGTCATGACATCCCTCAGGAACTGGTATAAAGGTGATAACCCACAAAAGGACATCAATCCCATTGTCACGGGTATGTTTGGTGCCATAGCTGGAGCCGCCAGTGTCTTTGGAAACACACCACTGGACGTGATCAAGACAAGAATGCAGGGACTGGAAGCTCACAAATACAAAAGCACTGTGGACTGCGCCTTGCAGATCATAAGAAATGAGGGACTCCTGGCATTCTACAAGGGAACAGTACCACGTCTAGGCCGAGTGTGTCTGGATGTGGCCATCGTGTTCGTCATTTATGAAGAGGTGGTGAAGGTCCTGAACAAGGTGTGGAAGACGgagtga

Function

symbol description
slc25a1b Involved in neuromuscular junction development. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in 2-hydroxyglutaric aciduria; combined D-2- and L-2-hydroxyglutaric aciduria; and congenital myasthenic syndrome. Orthologous to human SLC25A1 (solute carrier family 25 member 1).

NR:

description
tricarboxylate transport protein, mitochondrial

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15100 SLC25A1, CTP; solute carrier family 25 (mitochondrial citrate transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018629 True 882 mRNA 0.53 9 15831182 15848951

Neighbor

gene id symbol gene type direction distance location
AMCG00018627 NA coding downstream 5735 15795181 ~ 15825447 (-)
AMCG00018626 pi4ka,LOC108425210,LOC107751806 coding downstream 46636 15752336 ~ 15784546 (-)
AMCG00018622 ube2l3,ube2l3b,ub2l3,LOC106562742,LOC107599129,LOC105014760 coding downstream 173727 15648519 ~ 15657455 (-)
AMCG00018621 LOC104964243 coding downstream 194238 15633446 ~ 15636944 (-)
AMCG00018616 top3b coding downstream 244452 15570272 ~ 15586730 (-)
AMCG00018628 cltcl1,LOC106585059 coding upstream 14130 15863081 ~ 15894824 (-)
AMCG00018631 NA coding upstream 183749 16032700 ~ 16050889 (-)
AMCG00018634 NA coding upstream 211755 16060706 ~ 16081326 (-)
AMCG00018633 arvcf coding upstream 241034 16089985 ~ 16096022 (-)
AMCG00018632 arvcf,LOC102781924 coding upstream 267014 16115965 ~ 16143336 (-)
G117501 NA non-coding downstream 616751 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 850798 14979041 ~ 14980384 (-)
G117441 NA non-coding downstream 973587 14856420 ~ 14857595 (-)
G117438 NA non-coding downstream 995457 14833856 ~ 14835725 (-)
G117432 NA non-coding downstream 1046869 14780287 ~ 14784313 (-)
G117646 tbx1 non-coding upstream 173647 16022598 ~ 16025073 (-)
G117710 NA non-coding upstream 445879 16294830 ~ 16296445 (-)
G117809 NA non-coding upstream 1305051 17154002 ~ 17155261 (-)
G117853 NA non-coding upstream 1617183 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 1665906 17514857 ~ 17515120 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 312867 15498662 ~ 15518315 (-)
G117377 NA other downstream 1092870 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 1310307 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 1568028 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 2103312 13645368 ~ 13727870 (-)
G117784 NA other upstream 1159947 17008898 ~ 17009301 (-)
G117823 NA other upstream 1377139 17226090 ~ 17256271 (-)
G117899 NA other upstream 1754405 17603356 ~ 17603848 (-)
G118075 NA other upstream 2617417 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 2689467 18538418 ~ 18547368 (-)

Expression


Co-expression Network