AMCG00018632 (arvcf,LOC102781924)


Basic Information

Item Value
gene id AMCG00018632
gene name arvcf,LOC102781924
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16115965 ~ 16143336 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018632
GAGCAGAGCCCCAGTAACCAGACGTCTCTAGCCATGATGCAGGAGCCTCAGGAGCTGGTGGAGGAGACGGTAACCATCGAGGAGGACCCCGGGACACCCACCTCCCACGTCTCTGTGGTAACCTCGGAGGATGGAACCACTCGCCGGACAGAGACAAAGGTGACGAAGGTTGTTAAAACGATCACGCGCCGCACGTACCACCCTGTGACTGTCACCGAGACGCTGGTGGAGTCCAAGCCTGCCACTCCGATCGCGGAGATTGACCCTGTCACCAAGATGGTGAAAACCGTCACCACCAGGACGGTGCGCCAAGTTCCCCTGGGTCCAGATGGCCTGCCCATTCCCGACGGGTCCTCTCCGCTGGGCAGTTACACGGACTCCATCGACCGCCGGTACATGAAGAACGGGGACCGGTACATCACGCCCCAGGCCACCTCCACCCTCACCCGCTCCTTCAACAACTACAACGACTCGTACACCGAGAACCCCGAGGGTCAGTACCGCCACTACGGTCTCCACGACGGCTACACAGACATGAGTGACAACTATGGGAGCCTCTCCAGGGGTGTGAATTACCGCCCCCGATACGCCTACATGCCGCCCAACAACTACCGGCCGGAGAACAGCTACACCCTGCCCATCAGGAAGGATGACTATGGACACGTGGCCCAGCCCCAGGTGCCCATGGGCAGCAGCAATGTGGAGCTGAACCGCTCGCAGCCTGAGCGCTTCCACCCCGAGCCCTACGGCCTCGAGGATGACCGCCGCAGCCTGGggccagaggaggaggaggcctaCGAGCTGGAGCCTGACTACTCCACAGCCGGACGACGGACCCTTGCCGGCGCTGACAGGGGGAGGCAAATGAGGGAGCCAATCAGAGAGCCTGCCAGAGTCCGCGGCGGCTATGAGGACCCCATCGAGGCGGAGCTGATCGACGAGCGGCACCCCTACATCCCCAGCGTGTACACCGCGCCACTGGCCCAGCCGGAGAGGGGCAGCATGGCGAGCCTGGACCGCCTGGAGCGCATGGGCCGCCGGTCTCCCTCCATCGACAGCATCCGCAAGGACCCCCGCTGGCGGGACCCCGACCTGCCCGAGGTCATCGCCATGCTGGGCCACCCCATCGACCCCGTCAAGTCCAACGCCGCCGCCTATCTTCAGCACCTGTGCTATGAGAACGACAAGATCAAGAAGGATGTCCGCCACCTCAAGGGCATCCCCATCCTGGTGAGCCTCCTGGACCACCCCAAAGCTGAGGTGCACCGTAAGGCCTGCGGGGCCCTGCGCAACATCTCCTACGGCAAGGACAACGACAACAAGGTGGCCATCAAAAACTGTGACGGCATCCCCGCACTCATCCGCCTGCTGAGGAAGACCAATGACATGGAGGTCCGCGAGCTCATCACAGGTACACTGTGGAACCTGTCCTCCTATGAACCCCTGAAGATGGTCATAATTAACCACGGCCTGCAGACACTGACCAACGAGGTGATCATCCCCCACTCTGGGTGGGAACAAGAGCCCAACGAGGACTCAAAGCCCCGCGACGCCGAGTGGACCACAGTTTTCAAGAACACGTCCGGGTGTCTGAGGAATGTGAGCTCGGATGGAGCGGAGGCCCGTCGGAGGCTGAGGGAGTGCGAAGGCCTCGTGGATGCCCTCCTTCACGCGCTGCAGTCAGCTGTGGGCAAGAAGGATATGGACAACAAGTCGGTGGAgaactgtgtgtgtatcatgCGCAACCTGTCCTACCACGTCCACAAGGAAGTGCCGGGTGCAGAGAAGTTCCAGGACCCAACTGCCAACCAGGCCCCGGGGTCGGGAGGGCCacagaggaagaagaaagaTGATGCTGGTTGCTTTGGAGGCAAGAAAGCCAAAGGGAGGAAAAATGGAGAAAACGACAAAAACTATGACACTCTGGACTTGCCCAAGCGCACCGAGCCGACAAAAGGTAGCGTCTGA

Function

symbol description
arvcf Predicted to enable cadherin binding activity. Predicted to be involved in cell-cell adhesion and cell-cell junction assembly. Predicted to be located in cell junction. Predicted to be active in several cellular components, including adherens junction; nucleus; and plasma membrane. Implicated in DiGeorge syndrome.

NR:

description
armadillo repeat protein deleted in velo-cardio-facial syndrome isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018632 True 1968 mRNA 0.61 8 16115965 16143336

Neighbor

gene id symbol gene type direction distance location
AMCG00018633 arvcf coding downstream 19943 16089985 ~ 16096022 (-)
AMCG00018634 NA coding downstream 34639 16060706 ~ 16081326 (-)
AMCG00018631 NA coding downstream 65076 16032700 ~ 16050889 (-)
AMCG00018628 cltcl1,LOC106585059 coding downstream 221141 15863081 ~ 15894824 (-)
AMCG00018629 slc25a1b,LOC107665756,LOC107751928,LOC108247150,LOC107704153,LOC107706761 coding downstream 267014 15831182 ~ 15848951 (-)
AMCG00018640 trmt2a,LOC107687689,LOC106580466,LOC107672731 coding upstream 146498 16289834 ~ 16293685 (-)
AMCG00018639 zdhhc8,LOC107707819 coding upstream 158578 16301914 ~ 16325216 (-)
AMCG00018642 LOC102797792,LOC102795364 coding upstream 235367 16378703 ~ 16391388 (-)
AMCG00018643 NA coding upstream 251620 16394956 ~ 16409595 (-)
AMCG00018644 chfr,LOC100195666,LOC106580459,LOC102788874 coding upstream 295295 16438631 ~ 16462363 (-)
G117646 tbx1 non-coding downstream 90892 16022598 ~ 16025073 (-)
G117501 NA non-coding downstream 901534 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 1135581 14979041 ~ 14980384 (-)
G117441 NA non-coding downstream 1258370 14856420 ~ 14857595 (-)
G117438 NA non-coding downstream 1280240 14833856 ~ 14835725 (-)
G117710 NA non-coding upstream 151494 16294830 ~ 16296445 (-)
G117809 NA non-coding upstream 1010666 17154002 ~ 17155261 (-)
G117853 NA non-coding upstream 1322798 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 1371521 17514857 ~ 17515120 (-)
G117888 NA non-coding upstream 1441415 17584751 ~ 17585098 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 597650 15498662 ~ 15518315 (-)
G117377 NA other downstream 1377653 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 1595090 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 1852811 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 2388095 13645368 ~ 13727870 (-)
G117784 NA other upstream 865562 17008898 ~ 17009301 (-)
G117823 NA other upstream 1082754 17226090 ~ 17256271 (-)
G117899 NA other upstream 1460020 17603356 ~ 17603848 (-)
G118075 NA other upstream 2323032 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 2395082 18538418 ~ 18547368 (-)

Expression


Co-expression Network