AMCG00018634


Basic Information

Item Value
gene id AMCG00018634
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16060706 ~ 16081326 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018634
CTCTTTATAAACAACATGGCTGCGCTCTGCAGGTGGAGACACCGCTTTAAACGGACACTAGATCTGCGAAACATAACCAGGAATCTGTCAAcAAATTATGACTATGATTTGGTGGTTATTGGTGGAGGATCAGGAGGTCTGGCTTGTTCAAAAGAAGCTGCACAGTTTGGGAAGAAAGTTGCTGTCCTAGACTATGTGGAGCCTTCACCTAAAGGGACCAGGTGGGGTCTGGGTGGGACCTGTGTCAATGTGGGCTGCATTCCCAAGAAGCTGATGCATCAGTCTGCTCTACTGGGGAGTGCAGTGAAAGATGCCGGGAAATACGGCTGGAAAATCTCTAGTCCAGTAACGCATGACTGGCCGACAATGGCACGGGCTGTGCAGGACCATGTGCGATCCCTCAACTGGGGCCATCGAGTTCAGCTGCAGGACAAAAAAGTGACGTATTTAAACATGAAAGGAAGCTTTGTGGATGAGCATACTATCAGAGGAGTAACTAAAGCTGGAAAGGAGACTGTCTTTACTGCTGGGAATATTGTAATTGCAACTGGAGGACGGCCAAAGTACCCCACACATGGGCACTGGAACATGGAATTTCAAGCGATGACATTTTCTGGTTACAAGAATCACCTGGAAAAACACGTGGCCCTAGAGTGTGCTGGTTTTCTGACGGGCATTGGTTTGGACACGGCTGTCATGGTGCGCAGTATCCCCCTGCGAGGCTTTGACCAGCAAATGGCCCACTTGGTGACGGACTATATGGAGTCGTACGGCACCAAGTTCTTCTGGAATAGCGTTCCCAAGAAAGTGGAGAAGCTGCAGACAGGAGGCCTCCAGGTGACGTGGGCAGGTCAGGACTCGGGACACGAGCGGCAGGACACCTTTGACACCATCCTGTGGGCTGTAGGTAGAGCCCCTGAAACCAAGGCTTTGAATCTGGAAAGCATCGGAGTGGAGATCAACAAAGAATCAGGAAAAATCCTTGTGGCTGCAAATGAAGCTACATCCATACCTCATATCTACTCCATTGGAGACATCAGCGAAGGCCGACCTGAACTGACCCCCACAGCCATCAAGGCGGGAAAACTTTTGGCCAGAAGGCTGTTTGACAAGACCAGTGAGCTGATGAACTACGACAACGTCCCCACCACCGTGTTCACCCCACTGGAGTATGGCTGTGTGGGGCTGTCCGAGGAAGAGGCGCTGGTGCGGCACGGGAAAGACAACATTGAGGTCTTCCATGCCTTTTACAAGCCTTTGGAGTTCACGGTGGCAGAAAGAGATGCCAGCCAGTGTTACATCAAGGTGGTGTGTTTACGGGAGGGTGACCAGCGAATCCTGGGACTTCACTTCACTGGACCCAATGCCGGGGAAGTCACCCAGGGCTTTGCTCTCGGACTACAGTGCGGTGCTACCTACTCCCAGCTGCAGGAAACTGTCAGCATCCACCCCACCTGTGCTGAGGAAATCACCAAACTCCACATCAGCAAGCGCTCAGGGCTGGACCCCACTGTCACGGGCTGCTGAGGGTAAGACCGCCCCTGACTCCCTGAGCGCACTGGGACCCTCTCCGGAGACGTAGGGGACATGGTCTGCACTCTCCttgctcattttttttttttttcctccactaaacgtgaataaattataaatggtcATTCTCAGAATCAGAATGGAATGCTTTTATTAGTATGATTTGCAAACATATCATGCTCTTCATTCCAAACAGTTTTCAAATAATCTGGCTTGTAAAGCGGACTCTCTTTGAATGAAATGATTTACTGCTGCAAAAACCCATCCACGGAACACAGAGTAATGAAGTTCAGTGATGGCAAAGTCATTTCTTGTCCCTCGTTTGTTTTTCGTGGAAAGGGGAAAGGCCAGTAgcattatttttagaaacatattgattaaattgtgattggaggggaaaaaagtaatggCCTAAGGATACTataccatttttttatttttccccctgaGTTTCCTGTCCGGTTCTCTTGGAGACTGACACGCACTGTTTATGTCAAGGTGATGGATGGCAGGAGGCAGTCCCTGAAGTGACACTTCTCTCTTTCCCAGAGGCTCTGAGTCTGAGAAATTAGGCTGATGTCACTCAACAGATCGCCTCTAACAGTTTAACTACATGGTTGTTTAGGCATTTCGttctctaaaaatatatttattttctctgaacCCGATATGGGCCGCAATGCCATTCATTGAgtataagataaaaaaaaattaaacaaatcccaAAGTTTGTAACAAATGGGGCCCATTCTTTTGGAAGGTAATCCTGTTACTGGCCAGAAGATGGTGTCCTTGTCTGTTGTTTTATACCCAGAATTTgctggatgtttttttcccccctcacatCTCCTTTACTTCCAGAGGCAACATTATAACGAATGGAAAAGTTTGTGTAAATAGGATGTGTATTTTAGGAAGTATGACACGTTCCCTTTTCCATCAACAGACACCTACGCATTTATTATTCACGTAATGGGATTTAAAACGTATATTCACAACtcaacaataaaaagaaaacattgaagCCCAAATGCCACTTTTAGACACTTATTAGAAAGTGGAAGATGTTACGTTTTCTTAACCGCAGTCCACAGTGGTTTACAGACGTTCTACACGATTGACACTGTGGTATAAATCTGTGTGGATGTATAGTTGGGTGACGGCAAATTCTCCGATATCGCATTAACACCCACAAAACCCATTAACTGGCATTCCACAACCCTGCGCAAGTACACAACGACTATCGCACATGAACATGTTGAAAATGGAAGAGAGATGGGGGtcgagggagggagagaggaaaaaaaaagacgtttatttttgtttgaagtcTAATCTGAGCCCGCTGATTAATTATCCTGACAGGCAAAATGACAAGAGCTTCGGAGAACTTGCTACCACGTTTATTTGTACCTTTGGCAAGAGTAAGACATTAATTCCCCTCTGTGGCCAGTGCTGGGATTCCTGTGCGCTCTGTTCAGGGGTGGTGTGATGATAGAAACAGCCTGACCTTTTGCACCGGTTTAGCAGCTTGACTTTATCatggaaaaaaaggagaagaaaagaaaagaaagattttAACTTCAGGgctggggtaaaaaaaaaacacacacaacaggctgaaatcttcaattaattaattttaaacttacTGAATACACAGAGGTATATGTCTAATGAGGCATTGGTTACCAGAGCTAAGGAGTTGATTCAAACGGCTACAGCGCTGCCACAAACAACAAGGTTTTCGGAAAGTGAAAAAGCATGTGGATGGAATGTggctgttttctgtgtgttttttttttaatggtcagTGACTATGCTTCTTCCCTGTGTTTCCAAATTCAGTGTATGCTTGTGAAGGATGCTTTAACCACACAGGTGTTGTAGTGGAGATTGAATCTGCTGCTTAGAGCCCATCAGTGTGACTGGATTTTTCAGATTAAGTGCTTCATTTtgttactattaataataataataatgtcataatTTCATGTGTACATATCTCCTTGTAAACGGAAAGTACATGAATTTACTTACTTAAAATTATTGTAGCTTTTCTTGCTAAGAGCTTAGGGTATCTTGAAGTCTGttgtttaaaaccaaaagaaGCTGAGCCCCAGCCCTGCTGAAAATACCAGTGTTGTGAGGGGCAGAGGGTCGGGATTAACCAAGGGGGTGCCAGCCTTATGATGACTTGTGCTACAACCTCTGTGGGCTGGACAAGTCTGATGCCAACTGGCACCCGatataaaacactgtttttccatcaatgttttggttgtttgtttcacagattgattctaaaatgtaaagtattataCATATGGAATTGTACATGGTTATTGctatacaataataaaagaaaatcaataaa

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004791 thioredoxin-disulfide reductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0050661 NADP binding molecular_function

KEGG:

id description
K22182 TXNRD; thioredoxin reductase (NADPH)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018634 True 3910 mRNA 0.45 16 16060706 16081326

Neighbor

gene id symbol gene type direction distance location
AMCG00018631 NA coding downstream 9817 16032700 ~ 16050889 (-)
AMCG00018628 cltcl1,LOC106585059 coding downstream 165882 15863081 ~ 15894824 (-)
AMCG00018629 slc25a1b,LOC107665756,LOC107751928,LOC108247150,LOC107704153,LOC107706761 coding downstream 211755 15831182 ~ 15848951 (-)
AMCG00018627 NA coding downstream 235259 15795181 ~ 15825447 (-)
AMCG00018626 pi4ka,LOC108425210,LOC107751806 coding downstream 276160 15752336 ~ 15784546 (-)
AMCG00018633 arvcf coding upstream 8659 16089985 ~ 16096022 (-)
AMCG00018632 arvcf,LOC102781924 coding upstream 34639 16115965 ~ 16143336 (-)
AMCG00018640 trmt2a,LOC107687689,LOC106580466,LOC107672731 coding upstream 208508 16289834 ~ 16293685 (-)
AMCG00018639 zdhhc8,LOC107707819 coding upstream 220588 16301914 ~ 16325216 (-)
AMCG00018642 LOC102797792,LOC102795364 coding upstream 297377 16378703 ~ 16391388 (-)
G117646 tbx1 non-coding downstream 35633 16022598 ~ 16025073 (-)
G117501 NA non-coding downstream 846275 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 1080322 14979041 ~ 14980384 (-)
G117441 NA non-coding downstream 1203111 14856420 ~ 14857595 (-)
G117438 NA non-coding downstream 1224981 14833856 ~ 14835725 (-)
G117710 NA non-coding upstream 213504 16294830 ~ 16296445 (-)
G117809 NA non-coding upstream 1072676 17154002 ~ 17155261 (-)
G117853 NA non-coding upstream 1384808 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 1433531 17514857 ~ 17515120 (-)
G117888 NA non-coding upstream 1503425 17584751 ~ 17585098 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 542391 15498662 ~ 15518315 (-)
G117377 NA other downstream 1322394 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 1539831 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 1797552 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 2332836 13645368 ~ 13727870 (-)
G117784 NA other upstream 927572 17008898 ~ 17009301 (-)
G117823 NA other upstream 1144764 17226090 ~ 17256271 (-)
G117899 NA other upstream 1522030 17603356 ~ 17603848 (-)
G118075 NA other upstream 2385042 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 2457092 18538418 ~ 18547368 (-)

Expression


Co-expression Network