AMCG00018636 (pgam5,LOC107089933)


Basic Information

Item Value
gene id AMCG00018636
gene name pgam5,LOC107089933
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16373896 ~ 16378701 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018636
CGCACACGTACTGACAACCTTTTATTTATGAAGACGTCGCTCaactttgttttcagtttcgATAGGGATCGAGGGGTGTAGAGGTTTTATTTTGCGGCACGACTCTTCCCTTGCACATCCCTGATCGGCCCTGGCTTTCACTGGAACAGCTCCTTTCCAATCCATGAAAACGATCAATTAATTGCGCTACAGCTGGCTCGGTGCGCCGTCGATCATATTTTCCCAGCCTCGATTGCAACCACAGTTGCCGTCTCTTACGCCTGCCCTGGTTCATTGTCAGCATGGCGTTCAGGAAGGCTCTCCGGCTGGTGTGTGGGGTCGCCGGCGGGTCGGCGGTGCTGCTGGCGGCGGTAGCGGCCGCGGAGTCCAGGGGAGCCTCTCCGGATTCAAGGTGCACTGATCGGCTGAGGAACTGGACGGGCTTGGCTGTCCTGCAGGCGGCACAGACCTGGACGTCCGGCACCAGCCATACCGTGTCACCCAGTGGGAACGGTTGGGACGATAACTGGGATAAACGTGAACCCCTTGCCCTCCTCAACGGGAAGAAGAAAGACAAGGAGGCGGGGGATGGGCAGCTGGCCGCAGAGTTGGAGAATAACAAACCCAAGGCCACCAGGCACGTCTTCCTGATCCGGCACTCGCAGTACAACCTGAACGGCCACGGAGACAAGGAGAGGATACTCACTCCGTTAGGTCGGGAGCAGGCGGAGCTGACCGGTCAGCGGTTGGCTGATCTCGGGCTGAAGTACAATGTCCTGATCCACTCCAGTATGACAAGAGCCACAGAGACTGCAAACATCATCAGCAAATACCTGCCAGAGGTTGACATGGTCAGCTGTGATTTGCTGAGAGAAGGAGCTCCGATTGAACCGGTCCCCCCTGTCAGTCACTGGAAACCGGAGGCTGTGCAGTATCATGAAGACGGGGCTCGCATAGAAGCTGCGTTCCGCCGCTACATCCACCGGGCCGACGTCAAGCAGAAGGAGGACAGCTATGAGATCATCGTCTGTCACGCCAACGTCATCCGCTACTTTGTCTGCAGGGCTCTACAGTTTCCCCCAGAGGGTTGGCTGAGGATGGGGCTGAATAATGGCAGCATCACCTGGCTGACCATTCGCCCGAACGGGAGAGTCGCCCTGAGGACTCTAGGGGACTCGGGCTTCATGCCTCCGGAGAAACTGACTCGCTCCTGACACCACCACGGACTCCCGCAGCGCTTCCTGGCTCATTCCTGCTCTCCATTCTCTGAATAGAAAGCTTGAGTTTGAGTGTAGTGTCTTCTGATTAATTCTCCTAAAGTGtcttggatttttgtttttttgttttttttaatctgctgaGCAAAACCTTTTTATGTTCTAACGATTCTGCAAAGTGATCAAATCTGAACTTTAATGTCACGTTTACAAAGGAACAGGAGATACCACTGTCcgtttttactttaatttttctacaaaaaaaggaaaaaacgaaGGAAAAGATGTCTGGAAAACAcgagggagggaaaaaaagaaatgttttgtacacttCTAATAACAACAGGGTTTTTGGAGCACATTACAAAACTGCTTCACAGTTGGACTGACGAGGGCAACTTCATGTGAGTGTTGGAATTGGTGAAATAATGCTggaaaactgatttttaaacAAACCTTATGCATATGATATGCCCCACAGTAGTTAAAATGCCAATTTAACCCTTTTCTAAGTTACAGTAAAAGGAGCACAGTGTGTAAATTATGTAGTTAGAtggttatttataaatgcatcatGTCCTCTTTTAATatgcagtatacagtatatatgtgtgcatttttCAGACTGGTTATCCGCTCAATAAAATTTGAACTGTGTTTCCTCCCTGAGTCTATTGTAGTTTTGTCAGCTGCTCTTATTCATGAGAAGTACTTTACTGTGTTCTGTATTTCTCTATTTTGGTCAGAAGGATGTGGTTGGGTTGTGTAGCATGTTCAACAGACATCTCATGACAGCAGCAGAGAATTGAATTCCTGAAATAAGGAACTCAAATGGGAACTCCAATTTGTATGTTATGGAGAAAGGGCAAGACAAAACCAC

Function

symbol description
pgam5 Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in peptidyl-threonine dephosphorylation and positive regulation of mitochondrial fission. Predicted to act upstream of or within programmed cell death. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to human PGAM5 (PGAM family member 5, mitochondrial serine/threonine protein phosphatase).

NR:

description
serine/threonine-protein phosphatase PGAM5, mitochondrial precursor

GO: NA

KEGG:

id description
K15637 PGAM5; serine/threonine-protein phosphatase PGAM5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018636 True 2076 mRNA 0.49 6 16373896 16378701

Neighbor

gene id symbol gene type direction distance location
AMCG00018638 ranbp1,LOC106580467,LOC107684983 coding upstream 75185 16296038 ~ 16298711 (+)
AMCG00018637 NA coding upstream 87233 16280833 ~ 16286663 (+)
AMCG00018635 NA coding upstream 95095 16256197 ~ 16278801 (+)
AMCG00018630 tbx1,LOC102781442 coding upstream 348798 16012287 ~ 16025098 (+)
AMCG00018625 NA coding upstream 582999 15785893 ~ 15790897 (+)
AMCG00018641 NA coding downstream 40338 16419039 ~ 16434303 (+)
AMCG00018648 NA coding downstream 692653 17071354 ~ 17090022 (+)
AMCG00018647 LOC106592780 coding downstream 762688 17141389 ~ 17149356 (+)
AMCG00018654 NA coding downstream 874454 17253155 ~ 17256857 (+)
AMCG00018655 NA coding downstream 912001 17290702 ~ 17296987 (+)
G117660 NA non-coding upstream 252451 16083353 ~ 16121445 (+)
G117573 NA non-coding upstream 675031 15695426 ~ 15698865 (+)
G117574 NA non-coding upstream 678643 15693213 ~ 15695253 (+)
G117557 NA non-coding upstream 746177 15627339 ~ 15627719 (+)
G117521 NA non-coding upstream 844555 15492246 ~ 15529341 (+)
G117768 NA non-coding downstream 370168 16748869 ~ 16749971 (+)
G117783 NA non-coding downstream 630197 17008898 ~ 17009246 (+)
G117801 NA non-coding downstream 775081 17153782 ~ 17155824 (+)
G117804 NA non-coding downstream 782061 17160762 ~ 17161040 (+)
G117805 NA non-coding downstream 782813 17161514 ~ 17161723 (+)
AMCG00018602 LOC102789415 other upstream 1392191 14954564 ~ 14981705 (+)
G117383 NA other upstream 1585763 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 1596786 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 1961617 14408958 ~ 14412279 (+)
G117178 NA other upstream 2026155 14345090 ~ 14347741 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 689511 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 1602439 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 2340505 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 2448896 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 2515634 18894335 ~ 18908956 (+)

Expression


Co-expression Network