AMCG00018639 (zdhhc8,LOC107707819)


Basic Information

Item Value
gene id AMCG00018639
gene name zdhhc8,LOC107707819
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16301914 ~ 16325216 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018639
ATGGAGCTACCAACCAAGTATGCAGTGGTAGAACAGCTTGAGGAGATTAGCAAGTGCCCCTGGCTGACAGATGCAATCTCCCCAGCTCTCCCCTTGTACAATGGGATTGTGTTCCTGTTCGTGTTGGCCAACTTCAGCATGGCAACCTTCATGGACCCCGGAGTGTTCCCTCGAGCGGACGAGGATGAAGACAAGGACGATGACTTCCGGGCCCCGCTATACAAGAATGTGGACATCAAGGGCATCCAGGTGCGGATGAAGTGGTGCGCCACCTGCCAATTCTACCGCCCCCCGCGATGCTCTCACTGCAGCGTCTGCGACAACTGCGTGGAGGTGAGTGAGAGCGAGCAAGGgcAGCAGCTTCAGACCGGGCTGCAGAGAATCCAGGGAGACCTGTCAGTGACTACAGGACTCGAACTCCCTTTGTTTGTGCTTCCAAATGTGGGCAGATTGTTTGAAGAAATTGATAGCTTTCAGAGATGGATAGCTGGGTATATGGCTGTCATCCTGAAAATTACCATGTCCCCTTCAGATTCTGACTTTGACCATCACTGCCCCTGGGTGAACAACTGCATTGGCCGCAGAAACTACCGTTACTTCTTCCTGTTCCTGCTGTCACTCAGCACTCACATGGTGGGCGTCTTCTCCTGTGGCCTGCTGTTTATCATGCATCACCTGGAGAAGCTGGGCGCGCTGCACACAACAGTCACCCTGGTGGTGATGTGTGTGGCCGGCCTGTTCTTCATTCCAGTCATCGGGCTCACCGGCTTCCATATGGTCCTGGTTGCCCGAGGTCGGACGACAAACGAGCAGGTGACTGGAAAGTTCCGTGGAGGGGTCAATCCTTTCACTCGGGGGTGCTGTGGAAATGTGGAGCACGTGCTCTGCAGCCCTCTGGTTCCCAGGTATGTGTCCGACCCCAGGAAGAAGCCAGCAGTCTGTATCAAGCCCCCATTCCTGCGCCCTGACCCCTCAGACCGACAGATCACCGTGAAGATCAGCGACAATGGGATCCATGCCAACATACACAAAACCAAATCTAAAAGCAGCCTGGATGCTCTAGATGATGAACATTTGGACAGCCAGCCACCACTCCCCCCCAAGGCTGACCCCAGCAAGTACTCCGAATTGAAGAGCCAGCTGACGTCCAGTGAAGAGAGTTCCCTGTACAGCAAGCCTTTGAACCCATCCACTCCGGCCATGTTCAAATACAGACCCTCCTTCAGCACCATCCCCAAAGTGCACTACCACACTGCGGGGGAGAAGATTGTGATGCAGGACGAGCGCAAAACTGCTGCGATCCTGGAGGAGGGCGGTCGGGGCCATGACTATCGCTCAGAGCCCAACCTGGACCTGCCCGACTACAGGAACCCCTCCCTCCACCGGACCTTCCAGTCCTCCCCCCTGCAGCTGGACTCCTTCACCATCAACTCGCGCTCGCTCAGCCTGAAGCACGCGCACCACCGGAACGGGGACAAGGTGCCCCTGCACCCCTTGAAATCGGAAGGGACCACCTCCACCCCGTACAAGAGCGCCTTCGCCGCCAACACGTTGTCCAACCGCAACGGCAGCCTCTCCTACGACAGCCTGCTGAACCCCAGCATCTCCCCCTCGGCCGGCGAGTGCCTGGCCCACCCTGGGATGCCTTCAGTGGGGTACCACTCGCCCTACCTGTCTGCTAAGATGTGTCACGTGCGGGGCTCTGAACTGCAGCGCCAACTGCCACCCACCTACAGCCCCATCCTGGGCGGCGGCAGTGGAAGGGGCGGTGGGGGAGGCGGTGGCGGTGGCAGTGGGGCTGGGAGCAGGCACTCGCCACACCCACGGGACCCCTCGCCAGTGCGCTATGACAACCTCTCCAAAACCATCATGGCGTCCATCCAAGAGCGgaaggagatggaggagagggagaagctGCTCCACCTCCGTGCCCAGGTCCAGGCCCAGGCCCAAGCGCAGGCGGAGGCGGCCTACGCAGTGGACTCGGGGGTGTACGACACCCCCAGCGGGTACAGCATGCAGCAAGGCGTCTGCTACCCAGACGAGCCCCGCGCCCTGCCGTCGTCCTCCGCCTACAGTTCCCGGGACAACCTGATGGGCGGTGCTTTCACGGGCCGGACGCCCCTGCTGCGTTCCTCTGCCTCCTCGCTCAGTAGCACCCCCCTCTCACGGGTGCCCAGGACTTCCACCACATCCCTGCACGCCGACATGGCCAACAACAACATGCAGGGCAGGCCCAGTGAGGCGCCCTACAGGTCCCCAGCCCACCAGGTGCCCCACTCCCCCTCCGCTCTCCCCCGCTCCCCTTCCTATGGCCTCCAGAAACCCCTGTCCTTCATCAACGCGTTGGAAATGACAGACTCGCCACCTCTGGGAGGCCCAAGgGAGGATGGCCATATGAGAACATCCCACAGTAAAATAAACGGGCAGCCCAAAGGCCTGACCAGGGCCGACTGCCGCTTAGGGTCTGCCTCCAGTTCCCAAGGCACCCCCGTGAGCCCCAACCGCCATACGAACGTTAAAAAGGTGTCGGGTGTGGGCGGGACCACCTACGAGATCTCGGTGTGACTGGGCGTCGCACAAAGCCGGAGGCACTGCCAATGGGATCCACTGCAGCGCAACAGAGGAAGGTTCTTGACCAATAGGCTGCAGCCTTATTCCCCAGGGAATGACGGTCCAGCCAATCAGACGATCCCTCTTTACCAGACTCACGGCAGTCCCTGTGAGCGGTGTACTGGAgagtacattttgtttgtgtttgtatttgtattgtttttattttggtcggTCTCTCggagagggggggggtgaaAAAGGATTTACAGAAATCTAAAGGAATTTGTTCCCTGTTGTGTGTACACCGCTGGGGGAGagtttgattgattttgttttttccttcatttgttttttattggtttattttttttgaggCACTGAAAGCAGTTTTCAGATATGTATATGACATGTTTTAGACGAGGCTTTTGAGATTCACGTCCACACACTGTTTCTCCTTTTCAGTCACTCCACTCTGAGGGGGCACAGCAATGAAAAGCAGTCATTTCAACCAGTGACTCAAAGACCATCCGATGGTCCAGTGTGGCCTGGGTCTCAGTGAACACGTCACATCGCACACCTTGGATGTCTGTGGGCACCAAGGGCAGGACGGTCTTTCTGTCACCCATCAATATTGTGTTCTGCAGTATTAACTTTTTATTGAAAAGCTGGGTGAATGATTTAATGCAGTGATTTGTAAGCTGCGGTCGTTGCCATTTGTTCCTTGTTTCTctttgtaaagatttttttgcttaatttgatTCTCTGTGTAGCTACACCGTCTATACATGgttaaaataacagaataataacCCACTtgcttaataaatatttatgaactgAGAAGTAGAGATCTTTTCTGCTGGCCAGAGCTGTTACGCCAGTGGAGTTGTAAGTAGTATCTGGACAGTGTGTTCTGATTTGGGCAGATACCATtttaacgtgtgtgtgtgtgtgtgtctgtgtctgtctgtgatcTAGCACTGGACTATTCATACACTGTCCGTCTGCCATACAcaacccaacaaaacaaaagtaggaaaatgtttcaaaaacTGTTTGTCTCTGCAGATTGGACAAAAAGTTCAGGtaactgtaaataaaagtaaaacatttaaaatgcaaagtttTAAATCACCAGAGTtttcttggtttttgttttgttataacacaaatgtttgatataaatcttgttttttcttttctttttatggaAGTATATTTAAATGCCTTTGGTTCTTGAATGTTTCCGCCACCtggaatcaattaaaataatgattgattATCCCTTGATTTGCAAGGGAAGCTAAATGATCATTGGGGCGATGCTAGTTTGTGGTTCCAATGTTTTGCATTGCACATAAGTCGGGACTGTACAGCCACTTTTGGAAAGCTCGATATTTGTTGTTACTGCATTAAATATTCTAGTGCAGCAAGAAAAGACATTTTCTTGAGGTTAAGAAGATTCCTACTGGACACGTCTATACTGTCGTCATTTCGATCCTAAATGTATGTGCTTATTATTGTGTGGTTTCTTTGTCCTCTAACAAAAGTAACGTTAAATAAGAAAGCTGAGTTGGTTGTATGACGGAGCAACATTCAGGGCTGTTGTCTGGCACAGCACGAATACGTACACCCTGCCTAAACATGAAGTTTAATGGaacgtttgtttttttttaatttcatacgAAGGTACATcagtttttagtttgtattcCTTTTATTAAAATCTAGGTTTGctttagttaaaaataaatagtgcatCTCAGTGGAGTTAAGTCTGTATGTTAGGGGTCTGGTCTGGGGGCTGTAGTTCAGTGTGGCTTATCGTTCTCTGTAATTCACCAACACCTTAAAACAGTCAGAAGTAATTAGTTGGATAATGTACTCTCTAGTGCTGGTGGGAGGAAAGGCAGAAGACCTGGCTGCCTTCAGGGACCAGCACTGCACCCCCTTGTTTGGTCCTGAAATCTGAACAAGGTTATCGTGGACTCCAAAGAAAGccaatttacacacacaccacccaaCTGCTCAGTTTCCATTCAGCGTTTttaatgtagtgtgtgtgtaattgttatttattgcagACTTATTTTTGCAGGTATGACAGTTTTgaagattctttttttttttttttttaggaaggACTGGTCTGGAAAATTGTgggaatttatatatatatatatatacatacatacacacacacacacgttcagAATAGGTCTCATATCCCAGTAGTTGCCAAGAACAGTCCTGCGTAGCTTCTGATCTCCGTTGCCCTCTCTTCACGGTGCGCTGTCTGGTATAGCTACCACTTCCCAAAGGCACTTGACTGTTTCCCCCATTTTAATTATGATCTGCATTAATGCATACTTAATGAATGTGCACAGAGTTACTGGTGCTGCACCGAATAGGTTTCACTCTAAAGCCTCTGACCGCAGAGGCAACTCGCTCGCTCTTCCCATGCTGCGCTCTGTCTGTGGGGCGTCCCCATGAGAGCTGGGACTGTGACCTGTTACTACTGGATGTGTGAGTGATGGATCAGGCTTTAAGATGTAATTGAAACTGAAGAACTACTTGAAAACAATTCACTAcgaacaaaatgttaattttcccAAGATTAACCCAACGGCTTTTTAATGCAGGACGTTCAGCAGGGCATTCCACTTACGCAAGGGGTCTTATGCACACTTTAGATGTTCATTACTGGCAATACTTTTGTGCTTTTGAAGGAACCAGTTATAACTCTCACTGGTCTCTCAATCCAGCAGTGTTTTACGGCGCCACGAGTCAAATTTTCATCTATCTTTTGTTCGCCACCTTTTGTCTCGCTGCGGTTATGGTGTGCAGGGGTTGAGGGAGTGGAAGATGAACGGAGCTCTTTGTTACACCAACTGCTGTAACATCTACTCTCCTGAGCATCAGTATGGTTTTAATTGAAGACCCTGAGTGAGCGAGCAGGGGAATCTAATGACAGCCCGGCTGTGGAGTGTTGTAGCCCTCCGTGTAACgatcacttatttattgtaCACTTGTAAAGTATATGTTgctaaattcatttttaatgatgcATTTCCGGCAGGGTAGATTTACAGCTCCGATGACAGACGCCCGCAGCGGTGAGCGAATGAGGACCATGAGTAGAAACATCCAAGTGCTTTATTTGAAATACCTACCttgaatgaatatataatggatattttattctttgtccCACTCTGCTATATTGTCCTCTGTCCTCTAGCATTTTTCCCCTCCATTCTTGAACAGAAGGTGGTGGGAACAGAAGGCATGAATGTTTAAGAAACTGAATACCACAGTTtgggtttattttcctttttaggTATTCATAATTTTCCAtgatgcattatatataatgcGTGTACATGTGTCAGTCAGGGTTCATACTCGCTGCCATTTTGTCAGCCTGTTGTTGCAAAATCATCTTACAGAACCGGATATCTTTCACCAGAGTGTTCAACGCGAGGAACCAAAGCTGTCGCTTATCAACCACTTGCTGCCAAGGAGCTGATACGTTTCAGTCACAAGCTTTGATTAATTTCTGTGCCATATCGTTGGTATTCTAGGGATGGCCTAAGTCAACCTCTGGAAAACAACTTTTGTGCTTGGTAGTTTGTATAATAGAGCAAAACGGAAATCATGCTTTGTCAATGAGTCAGTTAGTGCTCCTGATATACCCATTGATCTAATTGATCTAACCGTGTATGAGGGAGTGTTTGGCAGTTACACAATCATTCTTACTCTAGTATTTGCTTTCCCATGGACCAAGTTTGTTACATTTCTTGTATTTCAGATGTTTACAAAACTGAGACATTAAGATTTCCTATTTTTCGATGTCTAAAGTATATTAAACCATTTCCACCCTTTTATTCTTCCCCGTccaattacaacaaaaaaaataaaaaaaaaataataagtccCTATTATTGAAGCAGACGTCTGCTGCAAATTTTTGGATACTGCAATGTGGTTTTGCTTAATAAATCAGGACAGGTTATATGTATTACTTCTACCAGCGGACAGCACTATTTTATGTGTGAGAATTGCAGAGCAGGGTGACATCCTGCTGTAGTCCAGAACCGAGTGCCTGACTTAATAATGGCAGCAGGAATACCAGGTTAGCTGCCCTTACGATGAGAGttgggaggttttttttttctcccccttttaAGTCTGTTTTCCaggccaaataaaataaaaatcactagCACATAAGGCTAGGGCTTGAGGGTCACAGTGCAGGGAGTATCAGTGGCTTTCTGGAGCTACCCTGTTGGTGCACATAAGTTCAGGATCAGGGGCAAAGGACAGACAGGTTCCTCAGTGCACGGAAAATAACAATCCTGTACATAATTGTTAACTTTTGACATTTAAACAGTAAAGTGCTACTTGACCAAAAAGGTGCTAATATAAATATAGCCACGCACACAAATATTTTGGAGGGAAAGTAGGTCTGCACTAAACATGATATGGATTTTGATAATGCATAGGTTTACATATCAATAGATTAACTGTGGTCCGGACCTGGCACTTTTAacagcagggaaaaaaaagaccacaAGATCCGCAGAGGACCAACCTTAGATTTGTCTGTCACGGGGCCGGGTTTAATTTGCTGCGTTTTTCATAGAATGTATCCTGAAGCAGCCTCCCACTTTAACCCAGCGGATGGTGTACGCAGCACAAGAACCGcttccattttaaatacaggTGTATTTATGAGCAAGATTGAATCATTCTTGGATCGAACTTTAATCTGAACGTGTTtttgggagagagaaaaaaaggcaaGTTATTTTGCGGTTTGTGTGTGAGGGTGCTTGTATAGGGAGTATGTAAATACAGACTGCATGGGTTTACTGTAaaagacatttatatatataatttcttttCACCTGTATGTAAGCACtgaggaagattttttttttaattttaattcaaattcttTCACGATATTAagtccatttacattttctttcatacaCTTATGAATGTCATGTTTCCTGTACCTTTTCCTTTATAGAACTGTAAAGCATAAACATTTGACACTTTTTCAGCTTATGTCATTATTTTGTCCAATATATCATAAAAAGATTTTTGGTTGAGCGAATCGTGTTGGgactttttttcctccccactTGCGTCCTGCATTTAACTACGTTTGCATCTGCTCATTAGGAGCAAATTACGGTGTTTATACCATTTCCCCTAATTGGATGATATGGGCCTGTCTGTAGTAtccaagaaaatacatattaaatacatctgaGAGAAATAAACTGCAGGCAAAACTGttctaaaatacaattaaatatgtaaagatCCATATTCTATTT

Function

symbol description
zdhhc8 Enables palmitoyltransferase activity. Involved in peptidyl-L-cysteine S-palmitoylation and positive regulation of cholesterol efflux. Located in Golgi apparatus.

NR:

description
PREDICTED: probable palmitoyltransferase ZDHHC8

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K20030 ZDHHC5_8; palmitoyltransferase ZDHHC5/8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018639 True 7910 mRNA 0.46 12 16301914 16325216

Neighbor

gene id symbol gene type direction distance location
AMCG00018640 trmt2a,LOC107687689,LOC106580466,LOC107672731 coding downstream 8229 16289834 ~ 16293685 (-)
AMCG00018632 arvcf,LOC102781924 coding downstream 158578 16115965 ~ 16143336 (-)
AMCG00018633 arvcf coding downstream 205892 16089985 ~ 16096022 (-)
AMCG00018634 NA coding downstream 220588 16060706 ~ 16081326 (-)
AMCG00018631 NA coding downstream 251025 16032700 ~ 16050889 (-)
AMCG00018642 LOC102797792,LOC102795364 coding upstream 53487 16378703 ~ 16391388 (-)
AMCG00018643 NA coding upstream 69740 16394956 ~ 16409595 (-)
AMCG00018644 chfr,LOC100195666,LOC106580459,LOC102788874 coding upstream 113415 16438631 ~ 16462363 (-)
AMCG00018645 NA coding upstream 139525 16464741 ~ 16485588 (-)
AMCG00018646 LOC106580457 coding upstream 422437 16747653 ~ 16747961 (-)
G117710 NA non-coding downstream 5469 16294830 ~ 16296445 (-)
G117646 tbx1 non-coding downstream 276841 16022598 ~ 16025073 (-)
G117501 NA non-coding downstream 1087483 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 1321530 14979041 ~ 14980384 (-)
G117441 NA non-coding downstream 1444319 14856420 ~ 14857595 (-)
G117809 NA non-coding upstream 828786 17154002 ~ 17155261 (-)
G117853 NA non-coding upstream 1140918 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 1189641 17514857 ~ 17515120 (-)
G117888 NA non-coding upstream 1259535 17584751 ~ 17585098 (-)
G117916 NA non-coding upstream 1409460 17734676 ~ 17736324 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 783599 15498662 ~ 15518315 (-)
G117377 NA other downstream 1563602 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 1781039 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 2038760 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 2574044 13645368 ~ 13727870 (-)
G117784 NA other upstream 683682 17008898 ~ 17009301 (-)
G117823 NA other upstream 900874 17226090 ~ 17256271 (-)
G117899 NA other upstream 1278140 17603356 ~ 17603848 (-)
G118075 NA other upstream 2141152 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 2213202 18538418 ~ 18547368 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location