AMCG00018640 (trmt2a,LOC107687689,LOC106580466,LOC107672731)


Basic Information

Item Value
gene id AMCG00018640
gene name trmt2a,LOC107687689,LOC106580466,LOC107672731
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16289834 ~ 16293685 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018640
ATGGCTGAGGTTGTGGAAGGTGTCGTGGCAGGAGCACCAGACCTGGGTGAGGAGAAGGAGGCCGTACCAGAGGAGGCGGTGGAGGAGGGGGCGGATGTGGACCGTGGAGATTCAGGAGAGGAGCCTCAGCCAGACGGGAAAGAACCAGATGGGGCCGACTCCAGCGTCTACCGCTACATCAAGGATGACCTCTTCACCTCTGAGATCTTCAAGGTGGAGATCCAACACCTGCCCAAGTTCACCGGCTTCAACGACCTGAAGAAGTTCCTGGCCAAGCATGGGGTCAACCCTCACAAGATCAAGCTGTTTGGCCGGCAGACCTTCGCCTTTGTCACTTTCAAGAGCCTGGAGGAGCGGGACAAGGCGATGAAGGCCGTCCACGGCATGCAGTGGAAGGGCAACGTCCTGAGCGTGCGGCTGGCCAAGCCCAAAGCCGACCCCATCCAGAAGAAGAGGAAGCAGCAGGAAGAGGCCGGGGCGGGGCAGCCAGCCTCCAAACGCTCGGCGGCCTCGGAGGGGctggaggaggatgaggagccGCTGAGTAAGCAGCTGGCGGACGTGGTGACGCCTCTCTGGAACGTCCCCTATGAAGAGCAGCTGAGGAGGAAGGAGCAGGAAGTTGAAGGGGTCTTGCAAAGACTAGCGAAggAAATAggtaacaacaacaaagccATGTTGCCCTGGCTTTTTGTGCAGAAGGAGAAGTATAACAGAATGTGCTGTCCCCTAGAAGCTATCAGACCATCTCCCCTGCAGACTGAATATCGAAACAAATGCGAGTTCCTTGTCGGGAGGGGAGCAAAGGGGGAGGATAAGACGGTGGGCTTCCGACTGGGCAAGTACAAGGGGGGCTCCTGCGCTGTGGTGGAGCCGTCAGATACCGTCCACGTCCCCGTCCACACCAAGAGGGTGGTCAAGGCCTTCCAGGAGTACATCAGGACAACTCCCTACACAGTGTACTGTCCCGAGACGTACGAGGGCCACTGGAAGCAGCTGACCGTGCGCACGAGCAGGGCTGGTGAGATCATGGCGATGGTGTACTTCAACCCACAGAAACTACAAGACCCAGAGCTGGAAAAGCTGAAGAGCTCTCTGGGCCAGTATTTCTTTGAGGGAGCTGGTAAAGAAAGCAAGGTGACCTCTCTGTATTTCGTGAGAGAGGGGCAGCGGAAGTCTCCTAACCTTGAGGACCTGCCCTCAGAGCATGTGGCTGGAGAGAAGTGGATCCACGAAGAGATGCTAGGACTCAAATTCCAGATCTCGCCTCACTCGTTCTTCCAGGTGAACACGCCGGCTGCCGAGGTGCTGTACTCGGCTGTAGGGGAATGGGCGCAGCTGGGCCAGGACAGCACGGTTCTGGACGTGTGCTGTGGGACAGGAACCATCGGGATGTCCCTGGCCAAGAGTGTGAAGAAGGTGATTGGAATCGAGCTTTGTCAGGAAGCAGTAGAGGATGCCAAAGTGAACGCCCGGATCAATGGTCTGAGCAATATCGAGTTCCGCTGTGGGAAGGCAGAAGACATCTTCCCCTCAGTGCTGAACTCCATCGTGTCCCGAAACGTAACTGCGATTGTTGACCCTCCGAGAGCAGGACTGCATTCCAAAGTCATTTTGGCCATCAGAAGAGCAGAACACCTGAAAAGGCTGGTTTATGTGGCCTGCAATGCTAAAGCTGCCATGAACAACTTTACAGATCTCTGCAGGGCCCCTTCAAACCGGGTCAAAGGCGCCCCCTTCAGGCCGGTCCGAGCCATGGCAGTGGACCTGTTCCCTCAGACCATGCACTGTGAGCTGCTTATTCTGTTCGAGAGGGTGGACTACAGCTCCAGTGCTGACCCCCCAAAACCTGCGGAGCCATCCAAACCAGAACCTTCGGCAGACTGA

Function

symbol description
trmt2a Predicted to enable RNA binding activity and RNA methyltransferase activity. Predicted to act upstream of or within RNA processing and methylation. Is expressed in several structures, including cerebellum; digestive system; midbrain; pectoral fin musculature; and retina. Orthologous to human TRMT2A (tRNA methyltransferase 2 homolog A).

NR:

description
PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A

GO: NA

KEGG:

id description
K15332 TRMT2A; tRNA (uracil-5-)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018640 True 1887 mRNA 0.57 11 16289834 16293685

Neighbor

gene id symbol gene type direction distance location
AMCG00018632 arvcf,LOC102781924 coding downstream 146498 16115965 ~ 16143336 (-)
AMCG00018633 arvcf coding downstream 193812 16089985 ~ 16096022 (-)
AMCG00018634 NA coding downstream 208508 16060706 ~ 16081326 (-)
AMCG00018631 NA coding downstream 238945 16032700 ~ 16050889 (-)
AMCG00018628 cltcl1,LOC106585059 coding downstream 395010 15863081 ~ 15894824 (-)
AMCG00018639 zdhhc8,LOC107707819 coding upstream 8229 16301914 ~ 16325216 (-)
AMCG00018642 LOC102797792,LOC102795364 coding upstream 85018 16378703 ~ 16391388 (-)
AMCG00018643 NA coding upstream 101271 16394956 ~ 16409595 (-)
AMCG00018644 chfr,LOC100195666,LOC106580459,LOC102788874 coding upstream 144946 16438631 ~ 16462363 (-)
AMCG00018645 NA coding upstream 171056 16464741 ~ 16485588 (-)
G117646 tbx1 non-coding downstream 264761 16022598 ~ 16025073 (-)
G117501 NA non-coding downstream 1075403 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 1309450 14979041 ~ 14980384 (-)
G117441 NA non-coding downstream 1432239 14856420 ~ 14857595 (-)
G117438 NA non-coding downstream 1454109 14833856 ~ 14835725 (-)
G117710 NA non-coding upstream 1145 16294830 ~ 16296445 (-)
G117809 NA non-coding upstream 860317 17154002 ~ 17155261 (-)
G117853 NA non-coding upstream 1172449 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 1221172 17514857 ~ 17515120 (-)
G117888 NA non-coding upstream 1291066 17584751 ~ 17585098 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 771519 15498662 ~ 15518315 (-)
G117377 NA other downstream 1551522 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 1768959 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 2026680 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 2561964 13645368 ~ 13727870 (-)
G117784 NA other upstream 715213 17008898 ~ 17009301 (-)
G117823 NA other upstream 932405 17226090 ~ 17256271 (-)
G117899 NA other upstream 1309671 17603356 ~ 17603848 (-)
G118075 NA other upstream 2172683 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 2244733 18538418 ~ 18547368 (-)

Expression


Co-expression Network