AMCG00018642 (LOC102797792,LOC102795364)


Basic Information

Item Value
gene id AMCG00018642
gene name LOC102797792,LOC102795364
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16378703 ~ 16391388 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018642
TTTAACTCTAAGCCCTTCTGCCTAGTTTCATGCCAAGTCCATTGTCTGCTGCGAAAGGATCAAAACTCATTATaatctttcttcttcttattatttaattgttctgCACAGGTAGTTAAAAAATGGAGGCGATTCTTAGCAGGCTGAAGGGGCTGAGTGGAGACGAGCTCCGGGAGGAGATCATCGGCGCTGGGCTGAAGTGTGGGCCCATCACTGCCACCACCAGGGCGATTTTCGAGAGGAAGCTAGCCCGCGCCGTCCTGGAAAGCCAGGGGGGGGAGAACAATAGTGAGAACGAGAACAAGAGTGAGACCGGGAGCAGCCACGGAGCTTCCATCATAGATGGCCGTCCTGCCGGTGGGGGGGAGGGTGCAACCTCTGGGAGCAACCATGCCAAACTGGGGGAGAGTGCCACGCCCACTGACTCCCCAGACAAACTGCCCTCGGCCAGTGAGGAGGGGGATTTTGGGTACGGCATGGGGCTGAACCCCCCCGAGGAAGAAGCCTTGTCACAGAAGACAGGCTCTCAGTGCAGCGTCAGTGTGAGTGAGGCCACCACACCAACCAGCACACAGACCCCTTCAAAAGGGCCCCAGGCCTCCCCACCCTTGTACTATGGAGTTTGCCCAGTGTGGGAGGATGTGTTGGCCAGAAACGACAGGGTCCATGTCTATGTAGATAAGAAGGAAGCTCTGCAGGCAGTGAAGATGATGAAAGGGGCCAGATTTAAAGCTTTCTCCAACCGAGAAGACGCTGAAAAATTTGCAAAAGGGATCTGCGATTACTACCCTTCACCCAGCAAGGCTGTGCTGTGCGTCTCCCCAGGGAAGTTGGGCATGGTGTTCAGTAAGGACGCTTCTTCCCTGGAGGCCGAGACCATAAACCGAGAGCGAGCGAACAGCTTTAAGAGCCCACGGACCCAGGACCTGACGGCCAAGCTGAGGAAGGCGGTGGAGAAAGGGGATGAGGTGGCATTCTCGGAGCTCGTGTGGAGCAATCCCCGTTACCTTATCGGCTGTGGGGACAACCCCACCGTGGTGCAGGAAGGATGCCGCTATAATGTCATGCATGTTGCTGCCAAGGAGAACCAGCCTGGTATTGCCCAGCTCCTCCTGGACACGCTGGAGAACCCAGAGTTTATGCGTCTCATGTATCCTGATGATCAGGAAATGATGCTGCAGAAACGCATTCGGTACATTGTGGACCTGTACCTCAACACACCAGATAAAGCAGGCTTTGAAACTCCTCTCCATTTTGCCTGCAAGTTTGGATGCCCAGAGGTAGTGAATGTGCTTTGTTCTCACCCGGATACCGACAAAAACTGCAAGAACAAGTACAACCAGAAGCCTGCTGATGTcatttgtgaaagaaagaataaaaccgCAGATGTGAAACAGAAGATCAGAGACTATTTGGAAGATCGCTACTACATACCCTTATTGAGGGCCGCAGACAATTCTTCCCAGCCTGTTATTGGTACTCCGTGGTCACCTGATCCTTCAGAGACGCTTCCTCATTTGCATGTTCAGAGATTCACAGGAAGTCCGAAGGATCCTATAATGGCAGTGAGGGCTTTTGCTGGTCCACTCAGCCCATCAAAGGCTGATGAGTTTCGCAAGGTGTGGAAGACTCCCCCTCGAGAGAGGGCTGGATACTTCCACCACATTCTGAAATCTGATCCGGACAGAGGTGTGGAGCGGGTCGGGAGGGATTTGGCTCACGAGATGGGTCACCCCTGGGCTGAATACTGGGAGTTCCTCGGCTGCTTCATAGATTTGTGCTCTGCAGAAGGCCTACGGAAATTGGAAGAATATCTAAACAAGAAGGATTTCAGCGAGAGGGTCCAAGAGGAGGCAGGGGAAAACGAAACCAGCAATAGGTTCAAAACTCCATCCCCAGgCAAACCTAAAAAATTCTGCAACTCTATCTCGGTTGGTGCTTTCCTCGACGAAGACGATGACATAAGTTTGGAAGAAATCAAGAACCGTCAGAATGCCGCCCTGACCAACATCACGGCGGTGTGTGCGAAGGAGAGCCTAAAGGGAGCCGTGGGGGGCTTGGAGTGCCACATCCTCCCCATAAAACACAGCGCGGACCTCATAGAGACGGCAGCCGAACAGGACCGGCTGCTGCCAGAGAAGGGGCTCAGCTCGACAAACAAGAACGGCTTCTGCTCCCCTGTGAGCGACGATGCAACGCAGAATGGAGAGAGACCGACGAGGAGCTCCTCTGGCAGCCTGCTGTCTCCCATCTCCAACCTCATGGTCGAGTTCGAGAGGATGACGCTGCAGAACAGGGAGGAAAACGAGGCGCACCGGCCAGAGAGGAGGTCGGTTGGTGGGCTGAGGAGTTGGGAAGGGAGGGACTTCTGCGCGGCGGAGGTGGTCGCCGGGGTGGGACGCATCGCGCTCTCCACCAAAGAGGATCCCGTGTGCGGTAAAGGGAGCTCTGATCTGAAGGACAACAGTTTCTGGAAAACGTGTGAGAGCAGCGAAGTGGACGGGGATGCAGAGGACAGGTCCAGCACAAGCTCGGACGAGTGGTTCACGCCGGAGGAAAGCCTGGAGGCCCTGAGCCAGAGGACAGGGGGCACAGCAGCCTCTGAGCGTGGCAGCTGTGCCCGATCTCAGTCATGGGACCATGGGGGGAGAGATTTAAACAGCTCAGGTTCGAGCAGCTCCTCTTACAAATCTATTGAGAATACTCAAGAAGACTTTATATTAAGGACTCCACCCAACGTTAGGAAAGGCCTTTTCATCGATGGGGAGTCCCCATCAAAGCTGGACAGAGAGGTTCTATTAGCAATAGAAAGCCTTGAGGTCGACCTACAGAAATATCCCAGCATTCAGAAGTGGAAGAGCTCAGTCCagactttttcttcttctgagaTGGAAAGCTGGCCTAGCCCTGCTGTAGCAAAAGGACGCCCCAAGATCCAGCTGTACACTCCAGGCTCCCCCAGCTGCAGCATGCTCTCCACCCCAGGTCGGTACAGCCCTGCCCGGAGCACCAGCTCCCCAGACTTCAGCAGTCCCGGCCGCTACAGCCCTGCTCACCCCAGCTACATCCAGAGATTAAAACTCCTGTGAGCTGCCGGTCTAATCATCACTCGCCAGTCTAgtggcaaagaaaaaaacaattccactttgtttattgaattatatCGCAAACCATGtagtttacaaaaaaatatatatatgcacaagTGTCTtgagaatatttttttgttgttcttttatatTCTTCTATATATTTCATTCAGGATTCTCAACACATTGAGTTGTGCTGTAAGTTTCAGATTTAATGCAGGTTTCCtttattgtgtatgtatgtatgtatgtatgtatgtatgagtgtgggctttgttttaataataataataataataataataataacaataatagtaataaaaatatataacaaagcCTGTTGTGTTCTAGTCTGCGATACATTTCAGAATACAGATTTGCCTAGTCAGTTTCAAAGTATGCTAACCGTCAATGAGCTACCATCCCTGAAATATGACACAGCAGCCAAAATGGCATCTCTCTCTGAATGTGTATGAACAAGATCGGTGAGATATCAGAACATGTACAatactattatattttatactagACATTCTTTAGtagtatcacagttcagaagcacaaatgtttttgcttatgaaactgtacattttgacCCAACTGCCAGTTTTATGcctaagtattttttttaaatatgatttcagGAATTGCCTTATTTTCCTTAAGAGGAACCAGCCTCCACCCAGAATTGTGCTATCTTGTTGAGGTAGTCTGTAATAGACAGTTGTTTCCTCCATCCCAGCTTCTACATAAACCATAAGCAGTGTATTAGACAGTAGCTTGTCTTTTCAAGTGTAGGTTTAAAGTACAGCTGAAAAAAATCGTGTACTTTGGTGTTTTTCCATATGTGTTTGGGGTTGTTTTCTCAAACTTTTGAGATTTACTTTAAACgcctgtattattttttgtctggtCATGGTCACACTGTTGATATTGCATGTGCGGCCTTGAGAGAAATTAAAACCCCTTTATCACGTGTAAGTGTGACATTTTGACACGTCTGCCGCCAAATTATTTTGTCACTCTACAGATCATTAAAGGGATGCTCTGGAAAATCCCTAAAACTGTATAATAGGATAACTTGGAATAAAAACCCTGCTAAATTATCCCGAATCAAATTAAACtgcttaaaattgtatttaatgaaaCTAAAGAAGAGGCATTTGGTAATAGATTTATTAGTTCAGATGATATGATGCATAATGAGAAACTAGATTTGCTTTGTAGACAAACATTATATTGGGGTTTTCAAATAAATCCCTCTGTccaatgcattaatttaatgcaAGAGAGGGCGGCAATGTGGGCACTGTTGTTCACTGTGGCAGTCCATTGAGGAAAACGGCCAACCTGTTGTGCTTTATATGATGAGCTACAGCAATTGTACATTTGAGACCCAAGTGTAAATGTCATAATTCAGTAGTGTAACATGGATTACTCCCAGTTACAAGAAATGTAGTGAAAAGCATAGTGTAGAGTTTTCATCTTTCATGTTGAGAAGCAGTTGGCTGAGTCGCGCTTACATTTTTGACAGGAAATTCACTAATGAGTTCTCGTGTTTTCCTACCAGGGAGAAGCATTAGAAACCATTTTAATCTCAAAATGTGCTGAAAAAGGCTGTTGtcagtcattgtttttgtaaaaggtTTTAGCAATTCATCTAAATTGGGCATTTACAAAGAATGAAATCAgctaaatattttcttcttaaaaatcaatcaaaccttcattatttgaaatgttgaactTATGTAAGTACCATACACCGTGGTGTGGTGGGAAATATGTGTTCTGCAGTgtcgcattttttttttttttttttaagcttcttCATGTAATACTTCATATAATATCAAATTGTTATATACAAAGATCATTTTTGTTCTGAGGACATTTGTGTGGAGTCTTCATAATCGCACACTGCAGTGACTCAGTGAGCATTGATGAATTTTGTCTTGGCAACGCAGAAAAATGTGCGGATGTGTACAATGAGGACTCTCAATCAAGTCTATGGGAAATTGTATGATAATAAAGCAAGCTGTAGTTAGATTGAATTAACATTGTTAGCAGGGCTTCGGGCTAGAGGGTAGTTAGAAGACAGCCATTGACAGCTTGTGTCAGGAACAAAATCTGATTCTAAGGTATTGTTCcgattgtgttttgttgttcagTAGTATGTCGCAAGCAGCTGACAGCTCATTATGGATAAAGTGGGTTTTATCCACAGAATGTGGTACTCACTAAGAacaatgtttgtattgttaatgAGGACGAGATTgtctgttgtaaaataaaaatcaattttattgGTATTGGAGCCCAAACTAGTTTTGACTTTGTctgcactttatatatatatatatatatatatatatatataaatatataaaatgaataaaaaataaataaaaccttgaaTAAATCGAGatgtaatacatgtttaaatagaGGAAACTTACTTGTTTACAGTGGAATTTGAGTTTGCTGCCATTTTACtctcttgttttttgtgttatgGTGGTTGTTCTTCTGATATTGGCTTGATATCGATGTAACCCTGAAAGCAGGCTGCGTTCCCTTCAACTGGGGTTTATTCTTCTCCAGATGAGAACTATCTAAATCTACAACTGGTGTCCTGCCAGTGTGGAGAACaagatttgtaatttaattgtgGCCTTCATCTTGAGGTCCAATACCTATAATGTACTTCAAAGAAtctcttcaaatattttttccacccctgtggtatttttaatttttatctgATGTTATCCCAATATGAAAGGATTGTAATATATATCTATCCTTGTTTAAACACAAAAGGGAGTTGCAGTTAGCAGTTTTGAGTACAGTGAAATGATATACTGTTTGAAATACTTGTACTGTCTTGTGATGGATTGAGACACTATTAGTGTCCGTGTGTGAGCAGGACAAATGAATGCTGTTCAAGTCTCATGGAACAGTGATCTGTGAGATGTGATTGTGGGAATAATAAACAGTTTTCTAAATAGTTTGTATTTAGAAACAAAGGTGCACAATTTTTCAGTGTTGAAAACAATTCACATTCTCTCTGAGCCCGAATTGCAATAACCAGCTCTTAACAGAAGTTTCCCAATCATGTAAGCAAACGTTAACTTAAGTCATAGATTagcctgttgttttatttaatgattattcagtccttttcttctttgttaTTCAATGTCTCCTTCTCTGTAATCTTCACTTTGAAAtctctggaaaatatatatatatatatataatgatgcaAAGGAGAAGATATTGATTGGGACAAAAAGGATGgacgttttgtttgtttttgttttgctcttcaCTGCAGGGCCGTTTCTTGAAAATCATAACCACTtgcttccatttattttctcatgtttttatatgtttatatacatataattcaGACAATACAATTTGATCTCTCATTGGGATCCTCGGTATAATGAAATCTCTCCTGGGAGATTCTAGTTGTCACCCTTGTGAAATATTGTGCTGTAATCTCAATGGTTTTGCTATGCCTTGTTTAGGGCTGTAATCATAAGAAAGATATCTGCTTTAAGTGTACTGATCTCATGCTTGTCATCATTATGGCCCAAGTCTTCTAATGTGCTTGGAGAGGAGAAACATTATCTGGGGCCATTGCACCTTGCAGACCTGAACACAGTGCTCCAGGGTGTTTTTCGTCGGCCCAAATCTCTATACATAGAATTTGCTGAACTGAAAATGTACACCCCCCACTCTTTACTTGCAAATTGTATCTGTACGATGAAGTGGGTGACATAAATTGAATGCAACAGAAGAACAATATATGGAAAAATGATTACAGCCTTAAAAAGAAAGCCATCAATATATTGTGATAGCTTTGATAGTCAAATGGTtttctgaattgtatttttattttctgaagccTTTTGTCAAGGGATTAGGCTTTGCGGCAGAGGAGCTTGGTAAGCTTGGAGCGTTTCCATTTGTCGTGTCAAATACTTCTCAAACTGCCCATCCAGCTTCTTTTAGCTTTTTAGTGCCTTTTATATTCTAACAATGTATGAAAACCTGTTGTCGTTTAACAGTGTAAAATGTGGCACAGACTTAACCTATGTGTCTTGTTCACGATTCTGAAGATAGGAACGAAGTAGCCCAAACTGAAATTTACACTCAAGAGTAGCATTGGTATATGCAGTTTCAATACCTCCTAAATAAGATTGTAAGAAGTTTACAGATTAGTGTATAGGATGTAATGCCAGCCTTACTACTTTATTATTAAAGCTTCGTAGTGCCAACAACATGGTACGCTGGAGTTGCTGTAAAATGTTGACTTCtcagacttttgtttttgttctgttctttggGTCCTGGTTTACCCCCTGCATGCATTTCTAGTCCTATTTTATCACTGTTTGTCAGAAGAAAGTGTTTGTTGTACtactgaggaaaataaataaatcggtGCACATGA

Function

NR:

description
PREDICTED: ankyrin repeat and LEM domain-containing protein 2-like

GO: NA

KEGG:

id description
K21412 ANKLE2, LEM4; ankyrin repeat and LEM domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018642 True 7563 mRNA 0.43 12 16378703 16391388

Neighbor

gene id symbol gene type direction distance location
AMCG00018639 zdhhc8,LOC107707819 coding downstream 53487 16301914 ~ 16325216 (-)
AMCG00018640 trmt2a,LOC107687689,LOC106580466,LOC107672731 coding downstream 85018 16289834 ~ 16293685 (-)
AMCG00018632 arvcf,LOC102781924 coding downstream 235367 16115965 ~ 16143336 (-)
AMCG00018633 arvcf coding downstream 282681 16089985 ~ 16096022 (-)
AMCG00018634 NA coding downstream 297377 16060706 ~ 16081326 (-)
AMCG00018643 NA coding upstream 3568 16394956 ~ 16409595 (-)
AMCG00018644 chfr,LOC100195666,LOC106580459,LOC102788874 coding upstream 47243 16438631 ~ 16462363 (-)
AMCG00018645 NA coding upstream 73353 16464741 ~ 16485588 (-)
AMCG00018646 LOC106580457 coding upstream 356265 16747653 ~ 16747961 (-)
AMCG00018651 LOC106920899,LOC106940379,LOC107600134 coding upstream 521379 16912767 ~ 16923594 (-)
G117710 NA non-coding downstream 82258 16294830 ~ 16296445 (-)
G117646 tbx1 non-coding downstream 353630 16022598 ~ 16025073 (-)
G117501 NA non-coding downstream 1164272 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 1398319 14979041 ~ 14980384 (-)
G117441 NA non-coding downstream 1521108 14856420 ~ 14857595 (-)
G117809 NA non-coding upstream 762614 17154002 ~ 17155261 (-)
G117853 NA non-coding upstream 1074746 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 1123469 17514857 ~ 17515120 (-)
G117888 NA non-coding upstream 1193363 17584751 ~ 17585098 (-)
G117916 NA non-coding upstream 1343288 17734676 ~ 17736324 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 860388 15498662 ~ 15518315 (-)
G117377 NA other downstream 1640391 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 1857828 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 2115549 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 2650833 13645368 ~ 13727870 (-)
G117784 NA other upstream 617510 17008898 ~ 17009301 (-)
G117823 NA other upstream 834702 17226090 ~ 17256271 (-)
G117899 NA other upstream 1211968 17603356 ~ 17603848 (-)
G118075 NA other upstream 2074980 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 2147030 18538418 ~ 18547368 (-)

Expression


Co-expression Network