AMCG00018643


Basic Information

Item Value
gene id AMCG00018643
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16394956 ~ 16409595 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018643
ATGGAAATCGAGACACAACAACAAGGCTCACATCCCAATGCCAAAGCAGGTGCCAATTCTGCTGAGAGCACTACAGAGCTGCTGCAGCAGGGGATTGTGGGAAAGCCACCAGCTACCGGGCATGGAGTTAATGGTCCTGTTGCTAATCCAGACACAGTCCTAAATGGAGACAAAACGGCAGCAGGTTCAGGCGCTGCAGGCGAGAGCCACCCTAATGGCCCCCTGCCCCCTCTGCCCCAGGGCCCCTCTGCCAGCCCACAGACCGAAGAGCCGTCCTCAGGTGTGGCCGCTTTCCATCACAACCTAACGAAGTCTCAGGGAGCTAAGTCTGAGCCCACAGTTCATAAGAGTGATGCATTGCAGTCTCTCAAACTCAGTCTACCTATGCAAGAAACTGAACTGTGCTCCTTAGAGCCCTCCCTGGAGCTCGAGAATGAAGAGCAGATCCGCATCGCGGCCCGCAGGCGCCTGGAGGAGCAGCTGAAGCAGTATCGGGTCCAGAGGCACCAGGAAAGATCTCATCATTCGACCCCCAAAGGCCGCCCTTTCAGCACACTGGACCCAGAGTTGATGCTGCACCCTGACGGACTGCCCCGGGCCAGCAACGTCTCCATGACCAAGGAGTACTCCTTCATGCGTACCAGCGTGCCCCGGGGCCCCAAGCTGGGCAGCCTGGGTATCCCACAGCCTTTCAAAGAGAAGAAGTCCTCCAGGTCGTCTCGCTCCAGCAAGATCCGCTCCCTCGCCGACTACAAGAGTCCGGAGGCGGATGCAGGGGGCAGAGGCAGCTCCAGGTCCCCGGCGGGCGAGGCCTCCATGGGGTCGCTGAACTCCAACAGGAGCTCGTCGTCCATCGTGTCTGAGATCAGCGTGGCCTCGGAGACGGAGGAGCAGCTGGAGCCCTCGTTGCACTTGGGAGACAGCATTTCGGAGATCGACGGCAGCGAGTCGGGGGCACGGCAAGACGGCAACGACAGCGACAGCTCGTCCTACAGCAGCGTGTCTGCTTCGGCCACGTACGGCATGCTGTCGGCCATGGTCAGCAGGCAGAAGGCCCCCTACACCGTGGATGGCAGGGAGATCGCTGCGGATGCCGTGGGCCAGTACCCGTCTCTGCAGGAGGTGCTGCAGGCCGCCACGGATGAGCGACACTTGGAGGCTCAGGAGCCGGAGCTGATGAATGGAGAAGCGCGCAGCCGCAGAGACAGCTTTTCTAGCAGTGTGTCCCTGGGAAGCTCAGTAATGGGAAGTCATGATGAGATGCTGCAGGTCCTGAAGGAAAAGATGAGGCTTGAAGGGCAGCTGGAGGCACTTTCATCTGAAGCAAACCAGGCGCTGAAAGAGAAGACGGAGCTGCAGGCCCAGCTGGCCTCCCTCAACGCCCGGCTCCAGGCCACGTTTGAGCAGAACCAGATCAGTCAGGAGAGGCAGAGCTCCCTCAGCTCAGAGGTGGGCACCCTGCAGCAGAGCTGCTCAGAGCTGGAGCGTGCCATGTTGGAGCTGCAAGGCAACCTGGAGAGCAAGAACGCCAACCTGGCATCGCTAGGCAATGACCTGCAGGTGGCGGAGGAACAGTACCAGAGGCTCATGGGAAAAGTGGAAGAAATGCAGCAGATCGTGGTCTCTAGGGACAACTCTGTCCAGGAGCTGCGGCAACAGATGAGCAGCATGCAGACCCAGCTGCAGCAGGTACAGCGGGAGCGCAACACCCTGCAGTCACGGCTCAAGACCTCCCAGGCCGAAATCGCCTCGCTGCAGCAGGTGCGCCAGTGGTACCAGCAACAACTGGTGCTAGCGCAAGAGGCCCGGGTCCGACTGCAGAGCGAAATGGCCAACATGCAGGCCGGTCAGATGACGCAGACAGGAGTGCTGGAGCACCTGAAGCTGGAGAATGTGACACTGTCCCACCAGCTCACAGAAACGCAGCACCGCTCCATCAAAGAGAAGGAACGCATTGCTGTGCAACTGCAAAACATAGAGGCGGACATGCTGGACCAGGAAGCAGCCTTCCACCAAATCCAGGAGGCCAAATCAATGGTGGAGGAGGACCTTCAGCACAAACTGGAGGAGTTTGAAGAGGAGCGGGACCACCTGCAGAAACTGGCCAACTCCGCCAGCGCTCTGGAACGGGAATTGCAGCAGGTGAAGCTGGCCCTGGCCCAAAAAGAGTTGCAGCTCACGGCGCTGCAGCAGGAACACTTGGAGCTGATGAGGCAGCTGACAGCCACCCAGGAGGCCCTGCACACCAAGGAGCAGTCCCTGAACCAGCTGGAGGCCCGCTTTCTGGAGCTGGAGGCCCAGCTGAGCGAGCTACAGGCCGACAGCACGGCCAAGGAGGACTCCATCCAGTACCTGCAGAATGAGAAGATCGTGCTGGAGGTAGCGCTGCAGGCTGCCCGGGCGGACAAGCAGGGGCTGGACAAGGGAGTACAGCGGCTCGGGGAGGACACGGAGGCGGCCTCCGAGATCCTGGAGCAGCTTAGGCAGGAGGTCAAAGTCAAGGCCACACAGGTCATGGTTGAGGCCTATAGGCGTGATGCCAGCTCCAAGGACCAGCTGATCAGCGAGTTGAAAACCACGAAGAAGAAGCTGCTGATGGAGGTGAAGGGGCTAAAGCAGGAGCTGCTGAACTCCCAGGTGGAGAAGCAGGCAGCTGAGCTGGAGCAAAGCCGGCTACAGAAGGAAGTGTCTCGGGTCCAGCAGCAGATGACCCGGCTGGAGGATCACTTGCAGACCgtgcagagcgagagagaccgGTTAGAGACCCAGATTCAGTCCCTGCAGTTTGACCAAAGTCAGCTGGCATCGGTGACAGAGGAGAATGAAGGTCTACGGAAACAGGTGgagcaaatgcaaaaagaagcCAAAAAGGCTATCTCGGAACAGAAGGTGAAAATGAAGAGGCTGGGCACAGACCTGACCAGCGCCCAGAAGGAAGTGAAGGCCAAGCACAAGGCCTACGAGAATGCAGTGGGCATCCTGAGCCGGAGACTGCAGGAGGCACTGACGGCCAAAGAGACCACGGACGCAGAACTAAGCAAGCTGAAGGCCCAGGTCACCAACGGAGGCAATAGCCAGGCCTTGCAGGACAGAATAGAGACCCTGCAGACTGAACTCCAGGCAGTGAGCCACAGCAAGGCCATGCTGGAGAAGGAGCTACAGGAAGTGATCTCGCTCACCAGCCAGGAGCTGGAGGAATACCGGGAGAAAGTGATGGAGCTGGAAGATGAACTCCAGGAATCAAGAGGGTTTAAGAAGAGGATTAAGCGTCTGGAGGAGCTCAATAAGAAGCTGTCGCTGGAGCTGGAGCACGAGCGTGGGAAGCTGGCTGGAATGGGCcagtcccacaatgcactgcggGAGCACACTAACATCCTGGAGACGGCCCTGGCCAAGAGAGAGGCAGACCTGGTCCAGCTCAACCTGCAGGTTCAGGCTGTTTTGAAGcggaaggaggaggaagacaaTCAGATGAAACAGCTCATACAGACACTACAGGCAgctttacagaaagaaaaagccaCGGTGAAGGACCTCAAAGATCAGGTGGCCGTAGCCAAAGCAGAAGCAGCTCATAACAGACGGCACTACCGAGCGGCCATGCTGGAGCTCAGCGAGGTCAAGAAGGACCTGCAGGCCAAGGAGCAGCTGTTTAAAGCGATGCAGGACGAGGCGGAGAAACTCCAgGCTCAGGACGAGAGGCACTCCCAGGAGGTTTCTCAGTTCCAGCAGGAGTTGTCAGAGGCCCACTCCCAGCTCCAGCTGTTGCAGAAACAGCTGGAGGAGCAGCTGAACAAGCAGCCTCTCACCAATCAGGAGGTGGAGGATCTGAAGTGGGAGGTGGAGCAGAAGCAGAGGGAGATCGAGGCTCAGAAGCAGCAGCTGGAAATGGCGGAGCAGTGCAGCCACAGGGAGCTGGAGGGCCTGCAGACTGCGCTGCAGGCCATCAAGGCAGAGCTGGAGGTGGTGCAGGAGGAGCTGAGCTGCACCAGGAAGGACAAGTTCATGCTGCAGGCCAAGGTGTGTGAGCTGAGGAGCAGCATGAAGACCCTGCTGCAGCAGAACCAGCAGCTGAAGCTGGACCTGAAGCAGAGCCGCACCAGGAAGCGGATGGAGCTGAAGGGCGACGTGAACGTATCCAACCCCGTGACTCCGGTGAAGATCCCAGACTGCCCCGTCCCGGCCTCCCTGCTGGACGAGCTGCTGAAGCCCCCCGCCTTGGTCAGCAAGGAGCCGCTCAACAACCTGCACACCTGTCTGAAGCAGCTCAAGCAGGAGATGGACAGCCTACAGAGACAGATGGAGGAGCACACTTTTACCGTTCACGAGTCCATGACCTCGTGGACACGATTAGAAGGAGAGCTAACGGGACTGTCGGCTACGGACAGCAACTCGCCGTTGGAATCGGGGCCAAGCGACGGCTCCGCAGAGCCCGGCCCCCATGCAGTGCAGAGAGAGGCGGCCGAGCGCTCCTAACACTGGGCACGACGGACTGAGCTTCCCTGCGCTGGAaacctttctgttttgtttatccttctcccccccacacctttttttttacaacccCTTATGCTGGctaatttattgtatgttttgaaattgttttattataattattattatttctaagaAATTAATGACACCCAAATCGAGAACCACATATAGAGAGGTAGCAGGTTTGGATTTGCTTTGGCTTACTGAAGTCATATCTACAAAGCAAACCTAAAAATTTATGGTTATGACGGTTGACTCCCctactacattttaattgagttttacactacccccccccgccccatctttttttaaattatttttttattttattttattttttgtcagatgTTCTGGTTGGATAGTGTGATAGCTGTAGTAGCTCAAAGGGGAAATGAGTACCATTAGAAACTGTGTCTTTGCACATCGAGGCCTCGTTTGTGTGGCTTACCATACTGTTCTTCCTATCCACTGTGCCTCTGAATGAGAGGGCTCGCTcggggaaaaacacacacacacacacacacacataacggaaaaaaaagacagtgttGTCCACAGTCTATAGTCTTTCAATCGAGTATCAGAACTTTTTAAACCTGCTCGGCTTCTGTATTCCAAAATTCCAAGACGTCATGTctctaaaaacaagaaaaagcatCAAGCCATGAACTTCCATTCTCAAAACCCCTGCTTCACACGGTCGAGGAAGCTGACAAATGGCTGTGCATGTTTCTACAGCATCTTACAGCCTGCCTTTCACGTTCGAATCGCAGGAATGTATTGGTGATTGTTGAAGATGCCGTTTGCTTTGTCATTTAGATAATGCTTACCAAGTATTGCTTTGCCATCTAAAATGGTGTGAAGCTTAATATTTAGTGTGCTACTGTTGAgctcaatatattttaaataccatCCTGTAACGGTGGGGTTTGTGGTTTGGCCTGAGTTGTTAGTAATGGTTATGGCAGTGCCATAATGACTAGAAAAAAGTCACCAATAATATTTTATTGGGAAAtttaatatattgctttttGAATGGATGTATCTTcagttgtaaaatatatatatatatatatatatgtaaaagaTGTATCTAGATCTCAAGGGGTAACCCGCTGTGTAGCAGCACTAACTGATAACGTCAGAAAGATAATGGCTGAAGTTGCACGCTTTATGTAACAACACATAACTGACCTAAAAACAGAGGAAATAtctttatacaaaacatttagtttGCATTTGTATGCAAGGTActctttaatttattgttttattttttgttgtttgtgttttgattgatatattttaaagaaaattaattgtcAAAGATTTGTTGTTTCTCATGCGATCTGTTCAGTCTTGTACAGCGTTAATGATAGTGTGCATTTCTTAAGGGTTTGGGTTTATGGTTAGTCTTGTGAGGAAAGAAATGTTAAACAATGTGTTGTACGGaagattattttctttgctctgatatttataaatattgacATGGATTTAGGGATTTCCTAGGGCCTCTTAAACTGAATCAAATCCCAGATGttgcaaaagctttttttgaTGCAGCTCTTTTCTTGTTGAAGAAGGAAGGTCCTTTTTGTCCTTATTGAAAGAAAAGCTGCTGCACTCAAATCAGTTCCTCTAATGGAAAGAACCGCTACACTCAGTCCCTACAGCAGTTGGTATTAACTGCCATATAATATTGGAACCTTTCTGCTTGAGTTAAACACTTGTTCAAAGTCTGTAATGTTTGCTGTTAACAAATTTGGCCAGTATACCAAACTTGCAGCTCAAGACCTTTAAGTGTAGCATAACATAACAGGAGCAAGATGTACCTAAAgggacattttattatttatttatgaacagATATTGACATTTGTCAATTTCAGCGTAATTTCCAATCAGAATTAAGAAAGTGTGGATGATACTGTTAATTCTGATATCCTTCTGCCTCAGTAAATGCAAAATTGTCACAGTCCTTCACTAAAACTGTGGAGAAAGTCATCCTAGTGACACTTTCGAACCGTTAAGTTGTTGTAATCCTTTTTGCTTGAATTAACAAAAATAGGTTTCAGCGGATATGATTGCCAAATGCGTAAACTATTTTGTGATGACCAGTCATAGGAGATGTTGCGTTACTGCAAGTTCTTGATATTGACCTTTCATTGTAGAGATGTTTTTCTGGTCTTTTTCTCTATCCCTGTGGGGTAAGGTTCGCTTCAATATGGAATTCTCTATGTACTGCAGTTGTTCTGCTTACCTCTTGCATCTCTTTCCAAACTGCTgaaggtttaattatttttaatttaaaaaaaaaacagcaactgaaTAGCATTGTCTGAATAAtgccaaaactaaaataatacgAATATTAGGACTTTTTACCATTTGTACATTCGTCTAAAAGTTGCATTATTCCATTAAGTAAAGTTACATCCTTGCTATTTTTTATCAAACAAAGTATTGGATGTGATCTTGATGATGGTTTCTTTAAGGCTTTGTTTATGAGTCTGTGTGATACCTTGGATCCTGTTTTGCAAAGAGAGTATgggtaaaaatacatttatgtgtattgtgtgcAGTCAGGAATGGGGGTTTCTTCATCAAtcgtatgtatttgtattattattttatcaattcATAAAATGTGGTCTTCAAGGAAAAGTCCCATATATCAATGTACTCCAGAGTGAATTTTGCCCCATATGTAGACTTGTACTTTGGTATAGATAAATCATACACTGTAAGCATAGAAAAACTACTAATCTTTGTGTGTCTCGATGGATGAcctgatgaaaagaaaaatgttataaaaccTAATATTGTTCTTTggctaaaaagaaaaaggaataataaataaaatagggaGAATAGGCACTAAGGGGTGGTTTCACAGACtctgattagcactagtcttggtcTACCCTATATTATTTTAGGTAGTGttgtccaagactagtgctaatcaatgTCTGAAACCAGCTGAAAGTGCTTATTGGTTAAAAATAGGTTGCTGCAAACTGAATGTCTGTAAAATGGTTCTGCTTTTGTTAATGTAGTACTTGTAGTATGGGTATAGTGTACATAGTTAAAAAAGTATTACTGTAATACCAAGATTTctacaaaaaaaacttaattactGGCTTTTTGTTGAATACATAAACCACATAAACTTTCCTGAGCTTGAAAATTGTAAAGGTTAACAAAGCAaaagcatgtttaaaacaaagatgAAGAAAAGGTGCAAATTATTTCCTTTAAGTTCTGTgcaataaactattttttggTAAACTAATTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018643 True 7799 mRNA 0.49 22 16394956 16409595

Neighbor

gene id symbol gene type direction distance location
AMCG00018642 LOC102797792,LOC102795364 coding downstream 3568 16378703 ~ 16391388 (-)
AMCG00018639 zdhhc8,LOC107707819 coding downstream 69740 16301914 ~ 16325216 (-)
AMCG00018640 trmt2a,LOC107687689,LOC106580466,LOC107672731 coding downstream 101271 16289834 ~ 16293685 (-)
AMCG00018632 arvcf,LOC102781924 coding downstream 251620 16115965 ~ 16143336 (-)
AMCG00018633 arvcf coding downstream 298934 16089985 ~ 16096022 (-)
AMCG00018644 chfr,LOC100195666,LOC106580459,LOC102788874 coding upstream 29036 16438631 ~ 16462363 (-)
AMCG00018645 NA coding upstream 55146 16464741 ~ 16485588 (-)
AMCG00018646 LOC106580457 coding upstream 338058 16747653 ~ 16747961 (-)
AMCG00018651 LOC106920899,LOC106940379,LOC107600134 coding upstream 503172 16912767 ~ 16923594 (-)
AMCG00018649 galnt9,LOC103141400,LOC106920899,LOC106962167 coding upstream 553448 16963043 ~ 16977083 (-)
G117710 NA non-coding downstream 98511 16294830 ~ 16296445 (-)
G117646 tbx1 non-coding downstream 369883 16022598 ~ 16025073 (-)
G117501 NA non-coding downstream 1180525 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 1414572 14979041 ~ 14980384 (-)
G117441 NA non-coding downstream 1537361 14856420 ~ 14857595 (-)
G117809 NA non-coding upstream 744407 17154002 ~ 17155261 (-)
G117853 NA non-coding upstream 1056539 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 1105262 17514857 ~ 17515120 (-)
G117888 NA non-coding upstream 1175156 17584751 ~ 17585098 (-)
G117916 NA non-coding upstream 1325081 17734676 ~ 17736324 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 876641 15498662 ~ 15518315 (-)
G117377 NA other downstream 1656644 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 1874081 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 2131802 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 2667086 13645368 ~ 13727870 (-)
G117784 NA other upstream 599303 17008898 ~ 17009301 (-)
G117823 NA other upstream 816495 17226090 ~ 17256271 (-)
G117899 NA other upstream 1193761 17603356 ~ 17603848 (-)
G118075 NA other upstream 2056773 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 2128823 18538418 ~ 18547368 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030947 golga3 coding NC_007116.7 CM002889.2 18965494 ~ 19006290 (-)
grasscarp (Ctenopharyngodon idella) CI01000071_01392755_01411463 GOLGA3 coding CI01000071 null 1392755 ~ 1412681 (+)