AMCG00018644 (chfr,LOC100195666,LOC106580459,LOC102788874)


Basic Information

Item Value
gene id AMCG00018644
gene name chfr,LOC100195666,LOC106580459,LOC102788874
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16438631 ~ 16462363 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018644
ATGGTAGCCAGACAAGTGAAAAAGAAGACAAGTGATGGGGAGGAACCCTCAGAAGGGTACAGGAAAAGCTATCTAAGGAGGCACAGACGGAGCTGCAGTGACCTCAAGCCCCCTCAGGGACCCTCCATCCAATTTAAAAGCCAATGCAGTGAGCTGACGCCCAGTGGGCTGACGAGAATTGCCCTTGTCAGCGGAGAAATAGCTTCCCTGAGCCTCACGCTTGACGATGCTCAGGGCAGCGCTTTAAAGGCTGGGGGTCTGAACTGgtgtgtgcattgtgttgcCGCAAGTGTGATGGAGAACAGGGAGCGCAGTCAGCCGTGGGGGAAGCTGGTCAAAGTGGACTCGGGTTCACACTCCGAAATACTGCTGGTCAACAGAGAGTGCACCATCGGCAGGAAGAAggGCTGTGATCTTTCCTTTCCTGCAAACAAACTGGTCTCAAGTGATCACTGCAAAATTGTTCAGGATGAAATCTCAGGGGAAGTCTGGCTGGAGGACATGagCACCAATGGGACCGTGATCAATATGTCAAAGCTGGTGAAGAGACAGATGTACCCGCTACAGAATGGAGATGTGATCTACTTTGTCTACCGGAAGAATGAGCCAGAGCAGAATGTTGCTTACGTGTTTCAGTCTATTGTCACTGAACAGCCACATATCCGGGACGCCTCTGatacagatacagatgtcCCATCTTCTGAGAGCTTACAAGGTTCACTGGAGATTGCCAGTGTGGAGACTGTAGCTGTCCTCCCCACGCAGCCTCCCCTGCAAGCCCAGGAGGAGCCCCAGCCCTCCACCTCCACGTCTGATCCCTATAATGTGTCGGGTGCTTGTCCCGCAGGGGCGGCCCCCCCACAGCCCTCTGTTTCAGGACCTGGGGGTGATCAGCTGATGAGCGCTGTGGATCCCGCTGTCGAGTCTCCGAACACAGGGGATCACGCCAAGACTGAAGTGGCACCAGCCGAGTCCCCCGTTGCCTCCGCACTGAAGGAGGCCAAAGAGGAGGagccagagagaaagagaaggaaaacagACCAGGAGGATCACTTTAGCGCAGCCAATCCTGAAGTCAGTGAAGTGGACGGCACCCCGAAGGTGACTGCGGACCCCTGTGTGGGAAAGGGTAAAACTGGGGAGCACAAAACGGACAAGATGGAAGAGTCCCTCACCTGCATCATCTGCCAGGATCTCCTGCACGACTGTGTGAGCCTGCAGCCCTGCATGCACACGTTCTGCGCAGCCTGCTACTCGGGCTGGATGGAGCGCTCCTGTCTGTGCCCGACCTGCCGCTGTCCTGTGGAGCGCATCCGCAAGAACCACATCCTCAACAACCTGGTGGAGGCCTACCTGCTGCAGCACCCAGAGAAGTGCCGCAGCGACGAGGACCTGAAGAGTATGGACAAGAGGAACAAGATCACTCAGGACATGCTGCAGCCAAAGATCGAGCGCACGTTTTCGGACGAAGAGGGCAGCTCCGATTTCCTCTTTGAACTTTCTGATGCCGACAGTGAATCATCTGACATCAGCCAACCCTTCGTGGTGTGCAGACAGTGCCCAGGTTACAGGAAGGACCCTGTCCAGATCCCTGGGGTCTCAACACCGTCCCAAGAAGATGGGGGTGTCAAGCCATCAGGAGAAATGCCTTCCACCTCTGCTAATGTTCCTGCAGACCTCAACCTCACTGAAAAATGCTTAGACGGAGCCCTCAACAGCAATAACTATGAGTCTGACATCCTTAAGCTGCTGTGACATCCCGACCTGACTGTTACTGGGGACGCAACTGTCGTACTCAAGTGAAAGCGCACCATGCAGTGAAATTCAACCACATCTGTGAGCAGACCCGCTTTAAGAACTGAGGAGCCGGTGGGATATTCTGTGTGACGTATTTAAGGAATCTTCTCCACAGGGTGCAAGCGGATGTTCAAGAGTGTGTTTCCAAGTTTACCTTGTCTTTTGAAGCAAAAGTGTAATTTgcagttttgcaaaaaaagaaaaaagtttgacCTCTTCCAGGGCAAACTGACAAGTCGTtggtaaataagtaaaatggcTAAATGTGATCGACTCACTGGCTTATATGTATTTGACATTAAATTACCCATATTTTGCTATATAAATTCCAGCGTTGGAAAATATCCTCTATGGTTATGAATTAAGTAAATGGTTTTTGAGTGGTAATCCTTATCTTATGGAATAAGTAGGATGCCACCACAGAAATGCAGCACAACTGTCCCACCATGACCTTCATGCAATTCTTTGTACCAGATATTGCACTTATTCTGTGAACCTTTGTAACCAAGGTGTCACTTACACTTGAACATCAATAGGATCAAAAGGATTTTATCTTTCTCCCCTAAATTTCAACTCAGTCTATGATTAAATTACAGTTATATCTGTGGGACCACAGTGGGTGTGGAGAAGATGTTTGCATTTGTACCTCGCTATTCGATAGTAGAAGCAGAACAGCCTGGCGAgtctttgtttgattttgatatTATGATATCTGTGCCTGAAAGTTTCTCGATCGCAATGTCAAAGTGTGGATCCTTCTGCTAGTTTTATTAGTATGTGGTAGTAGAAGATTGCCAAGCATTTGTATTGCATATATAtgatttttcccttttcttagTACTGTGTTAAAGCCATGGAATATAGCAATTACCATAactcatattttattatgtttattcttctgtatttCGCCCCCGTCATTTAATGGTTCTTCCCACCCGAAGCACATATTGCCGGTACCTCTTTAATCACTATTTGTGGCAGTATACTTCCTTTTGATTTTAGGattatgtatgaatatatatatatttatatatatatataacttcagAAAGCTCCTATGCATTATTACTACCTGAGCTTTTTCCGCATATATTCTAATTATAAGAATTTCTACTAAGACGCTTGGATACTTGGATGCGTCTGATTTTTAGTGTGCTTAACTGCTCTTGGGGAAGGAAACtgaatctgtatttatttctggagagagagatcagttttctgccttttttgttttatagatgCGTCTTTTGATAGTTGCAAGAAGGCAGGGAGCCgtttagaaatgtattattggcGGGCATTCCTGAGAGATTGGGTGTGATAATTGTGTACATTTATGCTGCCTGAACTACTGGGGAGGTGAATCATTTGTTAGTTCTAATTTCTGTAGGTTTTAGCTGATGCCTGAGGGCTCAGTTGTATGCTTTGCTTAGGATAATCAGTACACTATTAGACCAAGATGCAACAGGCAATAGCAGTTTCCTTTCTGTAGATGCAGAATCTTCTTGTGTAGGTTAATAGGAATGAGTGAATGTTTTTCTATCCATATTGCAATAGGTTCAAAGCTCTTTTCTCTTCCGTAGGGTTTATACAAAGCCAAGTGTGCTTGACTTGAGCATTACATCGTTCTAGTGTTTTCCTTATTTAGAAGTCTCTGCTTTGTATTTGACAAACTGCCTAAAAGCTAGTCATAAAACATCTCCTTAAACCTTCAGAAACGTgccaatattttgtttgtattgttatggttattattattattgttgttattatttgttggctgcttttgttttttctagtaAGTATTTCAGGGGGTGCATTTCTTTTAagtcatacatttttaagaaacatttaatgtCTTAGAActtatttatattctgtttttcatAAGTTTGTGTTAGTATTGGCAGTTAAGTATTGAGTTTTAGAAACTccca

Function

symbol description
chfr Predicted to enable nucleotide binding activity and ubiquitin-protein transferase activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within cell division. Predicted to be located in PML body. Predicted to be active in nucleus. Is expressed in central nervous system and presumptive diencephalon. Orthologous to human CHFR (checkpoint with forkhead and ring finger domains).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X4

GO:

id name namespace
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0007093 mitotic cell cycle checkpoint biological_process
GO:0016605 PML body cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K10644 CHFR; E3 ubiquitin-protein ligase CHFR

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018644 True 3737 mRNA 0.45 15 16438631 16462363

Neighbor

gene id symbol gene type direction distance location
AMCG00018643 NA coding downstream 29036 16394956 ~ 16409595 (-)
AMCG00018642 LOC102797792,LOC102795364 coding downstream 47243 16378703 ~ 16391388 (-)
AMCG00018639 zdhhc8,LOC107707819 coding downstream 113415 16301914 ~ 16325216 (-)
AMCG00018640 trmt2a,LOC107687689,LOC106580466,LOC107672731 coding downstream 144946 16289834 ~ 16293685 (-)
AMCG00018632 arvcf,LOC102781924 coding downstream 295295 16115965 ~ 16143336 (-)
AMCG00018645 NA coding upstream 2378 16464741 ~ 16485588 (-)
AMCG00018646 LOC106580457 coding upstream 285290 16747653 ~ 16747961 (-)
AMCG00018651 LOC106920899,LOC106940379,LOC107600134 coding upstream 450404 16912767 ~ 16923594 (-)
AMCG00018649 galnt9,LOC103141400,LOC106920899,LOC106962167 coding upstream 500680 16963043 ~ 16977083 (-)
AMCG00018650 NA coding upstream 605849 17068212 ~ 17070690 (-)
G117710 NA non-coding downstream 142186 16294830 ~ 16296445 (-)
G117646 tbx1 non-coding downstream 413558 16022598 ~ 16025073 (-)
G117501 NA non-coding downstream 1224200 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 1458247 14979041 ~ 14980384 (-)
G117441 NA non-coding downstream 1581036 14856420 ~ 14857595 (-)
G117809 NA non-coding upstream 691639 17154002 ~ 17155261 (-)
G117853 NA non-coding upstream 1003771 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 1052494 17514857 ~ 17515120 (-)
G117888 NA non-coding upstream 1122388 17584751 ~ 17585098 (-)
G117916 NA non-coding upstream 1272313 17734676 ~ 17736324 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 920316 15498662 ~ 15518315 (-)
G117377 NA other downstream 1700319 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 1917756 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 2175477 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 2710761 13645368 ~ 13727870 (-)
G117784 NA other upstream 546535 17008898 ~ 17009301 (-)
G117823 NA other upstream 763727 17226090 ~ 17256271 (-)
G117899 NA other upstream 1140993 17603356 ~ 17603848 (-)
G118075 NA other upstream 2004005 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 2076055 18538418 ~ 18547368 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_029957 chfr coding NC_007116.7 CM002889.2 17780475 ~ 17813299 (+)
grasscarp (Ctenopharyngodon idella) CI01000071_02077867_02087670 CHFR coding CI01000071 null 2077105 ~ 2087670 (-)