AMCG00018646 (LOC106580457)


Basic Information

Item Value
gene id AMCG00018646
gene name LOC106580457
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16747653 ~ 16747961 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018646
ATGGATGGGAAATTGAGGCAGAGTCGGAGATCCCGGTCCCAGAGGGACAGGGTGAGGAGACGGGAGGCTGCTGGTAGGGATGCCCGCAACCAGAGTCCGTCCTCCTGCTCTGACAGAGAGCAAAGTCCCGGGAGGGATCATCCTTCTCAAAATGGTAAAAAACCTCCAAATCTGGCTCCCTCTGCCCGGACATCCCGTCCACCCAGGAGAAAGAGACGGGAATCCAGCTCCCAAGAGGAGGATATTATTGATGGATTTGCCATAGCCAGCTTTATCAGCCTGGATTCTCTGGAGGTAAGTGGGGGctaa

Function

NR:

description
PREDICTED: autism susceptibility gene 2 protein-like isoform X8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018646 True 309 mRNA 0.55 1 16747653 16747961

Neighbor

gene id symbol gene type direction distance location
AMCG00018645 NA coding downstream 262065 16464741 ~ 16485588 (-)
AMCG00018644 chfr,LOC100195666,LOC106580459,LOC102788874 coding downstream 285290 16438631 ~ 16462363 (-)
AMCG00018643 NA coding downstream 338058 16394956 ~ 16409595 (-)
AMCG00018642 LOC102797792,LOC102795364 coding downstream 356265 16378703 ~ 16391388 (-)
AMCG00018639 zdhhc8,LOC107707819 coding downstream 422437 16301914 ~ 16325216 (-)
AMCG00018651 LOC106920899,LOC106940379,LOC107600134 coding upstream 164806 16912767 ~ 16923594 (-)
AMCG00018649 galnt9,LOC103141400,LOC106920899,LOC106962167 coding upstream 215082 16963043 ~ 16977083 (-)
AMCG00018650 NA coding upstream 320251 17068212 ~ 17070690 (-)
AMCG00018652 znrf3 coding upstream 408259 17156220 ~ 17168116 (-)
AMCG00018653 znrf3,LOC106584905 coding upstream 431128 17179089 ~ 17224239 (-)
G117710 NA non-coding downstream 451208 16294830 ~ 16296445 (-)
G117646 tbx1 non-coding downstream 722580 16022598 ~ 16025073 (-)
G117501 NA non-coding downstream 1533222 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 1767269 14979041 ~ 14980384 (-)
G117441 NA non-coding downstream 1890058 14856420 ~ 14857595 (-)
G117809 NA non-coding upstream 406041 17154002 ~ 17155261 (-)
G117853 NA non-coding upstream 718173 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 766896 17514857 ~ 17515120 (-)
G117888 NA non-coding upstream 836790 17584751 ~ 17585098 (-)
G117916 NA non-coding upstream 986715 17734676 ~ 17736324 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 1229338 15498662 ~ 15518315 (-)
G117377 NA other downstream 2009341 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 2226778 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 2484499 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 3019783 13645368 ~ 13727870 (-)
G117784 NA other upstream 260937 17008898 ~ 17009301 (-)
G117823 NA other upstream 478129 17226090 ~ 17256271 (-)
G117899 NA other upstream 855395 17603356 ~ 17603848 (-)
G118075 NA other upstream 1718407 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 1790457 18538418 ~ 18547368 (-)

Expression


Co-expression Network