AMCG00018647 (LOC106592780)


Basic Information

Item Value
gene id AMCG00018647
gene name LOC106592780
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17141389 ~ 17149356 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018647
ttccagtgccAGGAAATCTAGGCTGTTTCAAAGACAGTGGCCATCCTCCAACTTTGACAGGCCCAAGTGAGACGTCAAACAAACTCACCATTCAGAACTGCATTAGTTTCTGCAGAAGACAAAGATACAAGCTTGCAGGAATGGAGTCGGGCTATGCCTGCTTCTGTGGGAACGATCCAGACTACCGTAGACACGGCGAGGCAGCCAGCACCGAGTGCAATCACGTATGTTTCGGGGATCACACCCAGCCCTGTGGAGGTGATGGGAGAGTCATCATCTTTGACACTCGGGTGGGGGCCTGTGGTGGGAATTACACCACACCATCAGGAGTCATCTATTCTCCTGACTTCCCAGACAACTACGGGACCAGCCGTGTTTGCTACTGGACTGTCCAGGTACCGGGGGCGTCCGTCATCCTCTTCAACTTCACCTTCTTCGACATTGTGGACTCCACAGACATGGTGGAGCTCCTGGATGGCTACAACAATCAGGTGATCGCCAGGTTCGATGGCAGGAGCCACCCTCGGGACATTATCAACGTCACTACGGACTTTGTCATCTTGTACTTCTACTCTGATCGGACAAACCAGGCCCAAGGATTTGCGGCTGTATATAAAGCATTCAAAGGTGAGAAGCCGAAAGGGGTTGAGGAGCCTGTGAGTTCGGTGTCACCCGAATCCGAGGTGGTAACAGAAAAGGCTAACATCAGTTTAAATGCTGTCAGATCCTCTCAGATCTTGTATGTCATCACATCCAGCCCGAGCAAACCAGACCACAACATGCCAgTGTGGACCATCTATGTTTTAGCTGCCCTTCTCACACTGACTGTCATTGCTATGGTTGCAAAGTTCCTCCTGCACGTAACCGTAAAatccCCAACAATCCCCTCAATCAGCGGCTCGGAGGCCTGCAATCAAAATGCGTCGTCTGAACCCTGGATCATCTTCTACAGACCTTCCACCATTTCCTTCTTCAAGAAAAAGCTAAAGAACCACCATGGCGATCTCAGTCCCTTAGTGAGAAACTAAGGAGGCACCCAAACCTGTGGGAATGTTCTCCCCAGGAAACGAAACAATACTGGGTAACCACATGCAGACTTTTGAAACAAGTGAGCTCACACTTCTCAGACTGGCAGCCAGCAGAGATCCAGCACGGACCAAACGCAATCAGTGACAAACTGAAACAGTACACTAGTCTACGGAACTAGACCATGTTTGGTTTGCTTTGGCTTCCTGCTTCCTGCTTCCTGCTTCCCGCTTCCTGTAAGAGTTGCTGCCCTTAAATACTGGTGCCTTAAACGCTGTTGGAAAATCTCCTCCAGGGTTGAAAAACGGGCACACGCACTTATCACAAAAGGTCACATGGAAAGAGCTGGAACTGTGGACAGTTGAGGAAAATGGACAGCTTCTCTCTGTGTACCATGGGGTGGCACAAAACAGGAGACAACTCCCTGCGCAATAAGACAACTATCATCAATTACATTTACGGTGTGAGCTACTAGTCGGTGGTTTTAATGTGTTACTAAGGGTTGTTAATCCTGCCAGTTGCAGAAGGAAGAATCTGAGATGGGATAAGACAGATGTTCGACCATAGAACTACCAAATGGAGCAATATGTTTGGATAAGCATCAATGGAAAAGAAACGATGCCCCTAAAAAGCAGGAAAAGGGATCTGTTGCtgtctttttcatatttttttccatcataACCCGTTTTATACCCATAATTCCACATTCCCAAGTGTATGCACCTGTTAggatgaattattattttaaaaaaactgaaaaaactggATGAGCTCAGATAGAAGAACCAAATAATAAGGGTGCTGTGGGTATGAGAATGTGGAAAATCGAAAATACTGCTTCAAGGGTCTGTTTAAGGGGGGGCTTAAGCTCCTCCTCCGATCTCTAGAAACATTTCACTCTTACTGCTGGGGGCTCTGATCTTTCTGGTCGGATCACTTACAAGTGCCTTAAGTATGACTAAAACTGGGCTTTCTAGGGAGTCATTTTGATTCACCACACACTAAACGCATCATCCTTCTCTGTGACCAAAGCTTGCCAAATTGTTGTCAACAGAAAGGAGCTGATTGTCACAGATAAGTATGCATTTACTCTAAGGTATAAAGCcagtttatttctgcttttaaacCAGTACAATAGCTCTACCTCGAAGAGCTAAAAGTATGCCTAAAGTATCCATTATGTTCGGTGTGCTATAAATATATGCCCtccatacattttatttttcacatttgagCGATTGgtaaataatactatatatcGCAACAACAGGCATCTTTGACTCTTGGGGTATTAACTCTACAGTCACCTGTCAACAGCCCCGCCATTCAGTCAACTCGCACACAATGGTAGACAGCCATAGCGCTGTCATTTAAATTTAGAGCAGGGATCGCCAAAATGCCATGGAACTCAGTGATCACATGGTAAATTAGCAACTGCAGATGAAATTCCCATCGAGTCTTTCGCTGCATCCTGAAACCTCAAAGCACTTTGTGGTAAAGCCCCAGCTACATCAACAATCAAACATGGAAGTGCAATCTTGTGTAAACTGAACATGGCAGCCATTTTGAACTGTCAGCCCACTCAACAGCGGGACCATTCCCCATTGGGGGAATCTAGGGAGGATGTCTAAACCTCACATATCCCAGCATGTTTTAAAAGGGCATGCGatctttcattttctgaatCGGGAAAGGATGTTGGTAATGCCCAAAGTATGGCACCTCCTTTTTGACCAGGAATAAAGAGCTCCTACTCTCCGCCAACTCTCAAACCAACGACATTCCTTACGACCGTCTTATGAACTATGAGGGAAATCAGACAGAGgaaattattatgtatgtggtcTCAATTCACAGAACCAATGAGGGCGAGGAGGGgatatattattaaaagaaaacatgttagaATGATGAGATTGGAAGTTGGAAGCATTTTTTCTAATGGTGTACAtgttgacaaaaacaaacttatgCAAGTAATGCCAACTTACCTGTTCTTTACATGTTTATTAGCACTTGTGTGTCAGAACAGTGTTGCATGTTCCATGTGAAGCTGATCAGACCTGTGGCTCTTCGAAGAGACTCTAAACTTCAATGCAGATTTGAATAAActgcaaataaagaaatgcacgAAGACCATAGAACTCTTATGTACCTGACTCTGCATGCACTCTCGTTAAGTGCACTCTTTCAGTAGTCTATAGGCCGATCAATAAGAGGGAATCTATTCTTTGTGgggttttttttgttggtttttcagAGCACTTCACACACCTGTCTTTACCTATTGTCCAGATCCATTCACAGCACAATCCCCACACGCGACTCTGTTTGTAGACAGATCTGTTggcttgtttttgtgtgtgtgtgtgtgtgtgtgatgtaatGTTTTACTTTGGTCAACCAATCAACTGTAATGTATATTGTTGAAAgaacaagaggaaaaaaacggttgcattttaatttatataaattgttaaaGAAATTGACAGCCAAATATCCTtgtgtataatttatgtatACAAAGCAGTCGTATATTGATGAATTGACATCGTTTATAGCTCGCATACTGATTAAGATCCAAATCCCCTGCTGAAGTCTGCTCCTCTGCATTTACTTTAAATTGACCTCTTCATGATCTTACCAGCAAGAGAAATGCAGCAAATATCCTCTGCATCAGTGATTTGACCTTATCTGGATGTCACAGATATTCATATTCTGCTAACAGGGATTCTAAGaggttggggagggggggttaaaatattttgttgttctttctttgttttccattgaattgtaaataaaaaaatagtacgaatattaatttatacagtaaattattcagttattttggaCGTGATTGGGATATCATTTTCTATGAGTTAAGttaaattgtagtttttattgaatgtgtccc

Function

NR:

description
PREDICTED: kremen protein 1-like

GO:

id name namespace
GO:0001525 angiogenesis biological_process

KEGG:

id description
K23091 KREMEN; kremen protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018647 True 3943 mRNA 0.43 6 17141389 17149356

Neighbor

gene id symbol gene type direction distance location
AMCG00018648 NA coding upstream 51367 17071354 ~ 17090022 (+)
AMCG00018641 NA coding upstream 707086 16419039 ~ 16434303 (+)
AMCG00018636 pgam5,LOC107089933 coding upstream 762688 16373896 ~ 16378701 (+)
AMCG00018638 ranbp1,LOC106580467,LOC107684983 coding upstream 842678 16296038 ~ 16298711 (+)
AMCG00018637 NA coding upstream 854726 16280833 ~ 16286663 (+)
AMCG00018654 NA coding downstream 103799 17253155 ~ 17256857 (+)
AMCG00018655 NA coding downstream 141346 17290702 ~ 17296987 (+)
AMCG00018659 taok3 coding downstream 397604 17546960 ~ 17574431 (+)
AMCG00018662 NA coding downstream 428579 17577935 ~ 17584564 (+)
AMCG00018663 NA coding downstream 436164 17585520 ~ 17593696 (+)
G117783 NA non-coding upstream 132143 17008898 ~ 17009246 (+)
G117768 NA non-coding upstream 391418 16748869 ~ 16749971 (+)
G117660 NA non-coding upstream 1019944 16083353 ~ 16121445 (+)
G117573 NA non-coding upstream 1442524 15695426 ~ 15698865 (+)
G117574 NA non-coding upstream 1446136 15693213 ~ 15695253 (+)
G117801 NA non-coding downstream 4426 17153782 ~ 17155824 (+)
G117804 NA non-coding downstream 11406 17160762 ~ 17161040 (+)
G117805 NA non-coding downstream 12158 17161514 ~ 17161723 (+)
G117808 znrf3,LOC106584905 non-coding downstream 74656 17224012 ~ 17224609 (+)
G117813 NA non-coding downstream 101513 17250869 ~ 17253023 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 71719 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 2159684 14954564 ~ 14981705 (+)
G117383 NA other upstream 2353256 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 2364279 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 2729110 14408958 ~ 14412279 (+)
AMCG00018681 NA other downstream 831784 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 1569850 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 1678241 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 1744979 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 2073812 19223168 ~ 19234351 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000071_02927971_02953988 NA coding CI01000071 null 2926649 ~ 2954167 (+)