AMCG00018648


Basic Information

Item Value
gene id AMCG00018648
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17071354 ~ 17090022 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018648
CAAGAATGTGCTTAAGTGGCAGATATTGTATCGCAGACAAAGTGTGGGCGTGTTTCTCATAGCTTTTTGAAAATATCCcccttttcatttgtgtttgttctgaaTTAATTGCAATTCACCGGGTTATAACACTTTTGCAGCCTCGTCAGCAGCACAGCTGACACAAACGGGTTCATATGACAgagttaataaaaaacaaatctcttctTATCAGAGACCTTTGATTTACACCCGTgcgtttttttaaacaaacgtCAACCATTATGCAGAGATAAGTAGACATTTGTATAGGTTACATATTACTGTTTCCTTTCAATGATCCGAGGGGactaaaaaaagacaaatattgtGATACATGCCAAACCACTCCATTAAAACAATGAAGAGAAACGCCAAGATGCATGGTCTGTTGCTTGCTACAGTAATCCTCTTTCTGATTACATTTATCTCAGCACCAGCCGGGGCACAGACCTGTGAAAATCACTGTGGCAAAAAAGCTGAGAATTGCTCTTGTCAATTTACCTGTGAGTCATTAACAGACTGCTGTCCGGACTACAGACAGTTCTGTTTGGAGATCTCCCCATATTCTGGCACTCTTCTGGGGGGGACTGATTTCTCGATCCTGCAAACAGTGTTTGAGCTGAGCTCCACACTTCGCTGCAGgTTTAATGGTGATATAGTAACAGATGGATATGTCGACATTGAAAGGAAAGGTCACTGCATTTCGCCTTTATTGTATGAAAGCGGATGGATTCCATTTGAGGTCTCAACAGATGGTGGACAAACATATAATCGCAAGGGAGAGTGGTTAGCAGTTCATCACAGTAAATTGGATTCTGAGCTTAAAATCAAGCTGGACAACGCAACAAAATGGCAGTATTATGGCACCCCTAACACAGCAGGATCCTTAAGCTTGAAGTGGAACACCTCTTTAATCACAGCGGACAATGTCAGTGTGGAGCTGTGGGGGTACAGAGAAACGGGTGAGCCCTATTCAGTCTCTTGGTTACCTGAATGGAAGTTCCTGTACACAGTTGAAAAAGCTGTTCCTAACAGTGGCACATTTAGCTTCACCCCAACCCCTGCGGGAAAACCCTTCTCAGACTGGGATGTTGGATCGATAAGAGTCAACCCAAGTACACCTCCAGAAGGGACAAGCAATGTCAATGCTCTTTGGAGTGGGGCTCACGCTCTGGCCTGGCACCTGGAGACAAAATTCAGAGAGGACTCTGCATCCTGGGCGCTCGACAAGTGCCTCAAATGGGATGAAAGTGAACGGGAGCTGCCCAACTTCCTGGAGGAGATAGCCGACTGCCCTTGTACATTAGCCCAGGCCAGAGCAGACACTGGCAGGTTTCATACAGATTATGGTTGTGATATTGAGAAGGGAAGTGTGTGCACCTACCACCCTGGAGCTGTTCATTGCGTGAGAGCCATCCAGGCCAGTCCCAAATACGCAGCAGGACAGCAgtgttgttatgacagcacggGGGCCCAGGTCCTGACCGCAGACTCGATTGGTGGAAGCACACCAGACAGAGGGCACGACTGGGGATCCCCTCCCTTCAAAAAGCCACCGAGAGTTCCCGGGGTTTCCCACTGGCTCTATGATGTCATCAGCTTCTACTATTGCTGCCTTTGGTCCGATAACTGCCACTATTACTTCACCCACCGACCGTCCAGTGACTGCAGGACCTACAAAGCCCCTAAATCTGGTATTGTGTTCGGAGACCCCCATTTTATAACATTGGATGGCTCAAACTATACCTTCAATGGGAAAGGTGAATACTATCTTGTGAATTCAACGTACAAAGCCCTGTGTGTTCAAGGAAGGACAGAGCCTGTGAAATTCGAGAATGGTACCTCTGCCAAGGCCACCAGGCTGTCTTCAGTAGCCATGCAAGAAAATGGCTCTGACATCATCGAGGTAAGGCTCACAGGCCAGCAGGACCATCTGGAGGTATTGAGAAACCAGCAAGTCCTTTCCTTCTCTGAGCAAAACTGGATTGACCTGAAAGGAGTGTTCCTGTACGTGTCTGTGCCTCAGAACGTCACGGTCATGTTTCCATCCGGAGCCGGTGTGGAGGTGCGAGCCAGAGGGGGTGTGATCAGCGCAACTGTTCTCCTCCCCAAGGAGTTTAAGAATCACACGCGCGGCCTGTTGGGTCTGATGAATGATAATCCACAGGATGATTTCGTGTTCCAGAACGGGACCGTCCTCACAGCTGAGCGCAGCAGCCCAGAGGGTTTCTTTGACTTTGGTGCAAGCTGGGCAATCACAAACGAAACCTCTCTCTTCACTTATGACTCGGAGTCATTGTTGAACACTTACTATTTCGCCGAAAAGCACGATTCCTCTTTTATTCCTGTTTTCACCGTCACCGAAGACCCCGGAGACCCCTTATTTGGAGAGATGTCTAAACTGTGCCGTGATAATTCCTACTGCAAGTACGACACACTAACTGCACGGAGCCTGAGTATTGGCAATGCCACCAGTATCTCCTATCAGAGCCACATGTCCCTTTTGAAACATCTGGAACCTGTGATTTCCTGTGGGTGGCTCTCGCCCCCAAAGAACGGGAAGAAGGAAGGCACAACTTACCTTGAAGGAGCCACAGTGAAATTAACCTGTAACAAAGGCTACGTCCTCTCGGGCTCGGCTGAACGCACCTGCCAGGTTGATGGGAAATGGTCTGGTGAAACCACTCACTGTGTAACAGATAATACCCTTGGAATCGTGCTGGGAAGTGTGTTTGGCTCAATAACACTCTTAGCCCTGATAGTGACGATTATCCTCCACAGCAAAAAGCAGAAAAGGAAGGCCGCCGCATCCTGTGTAACTAATGACTTGTGAGCAGTCAAATATtgcccaaaacagccctgaagTGCGTCTCCTAGCAGCCACACAATTAGTAATACCTGAAGTACAAGTTGAAAAATGAACAGCCAATCAGTGAAACTATTACAAGATTCTGTCAGTTTTCGATTTGTGCTTTGACAATTAATagtaccaataataataataaccaatttTATACACTAGACTAGATAACTACAGTGATATAATGTTTGTATCAGTATTACACTATGAAGCAGTTtataatttgattgttttacaCAGTTTTTAGTTTGAAAACAGCAGACCACCATGATTTTGTTCCACCTGTACATTAATTATGATGTCTTAGCTCAATATTGCAGCTGGCAGTAATGACTCATGGTGGCTTTTTGCTCTTATGCAACAGTATATAGCGGCTCTTTCAgctagggatttttttttctgttgctatTAAGGGGAAGGAGGGTAAATTGCTGTTAATTATGTTCAGATGAAATTACACAAAACCTAGCTTTGTTGCTATAGTACATTTAGATTTCCATGGATGTCTGACCTCGTTCTGTTCACTTCATGGTTCAGTCAAAGTTAACTGaccaaaacaagaaagagaatACTGTAATGAAGACTTTCCGATTGTAATGGCTTCAACAAAATACTCTCCTTACTTCCTAATATAGCCATTACACGGACAAAAATCATATGCCTAtgctgaaaaaatgaaaacggcAAAAACAATCTGGGAAATGCATCCTGTTTTGTTGACGTGTAACTGTTACTAATCACAACATGACAAATTCTGAAATGAATCCTGAAAACAATAGTGATGCAATGGTTCAATATGTATGGTATTCTGTTTGTTCTGCTTAGCCACACAATTCCAGTCACTGAATAATGtctgtaatatattaatacaacacTCCAGATGCTCTTTGCTGCCTGTGTAGAAGAAACGCTGCCTAATACAATCCAGTCTGCAAACGCCTCTTGTACgagttttaagtacagtttgaATGAGTGTGGAAGTCTTTTCTctttaaagcatgttttaattgGTCAATTGACATAGATCCCTGACTTccttttaaattacttattttttcagctGTCATTTCAGTTGTTGTAATCGTTGCTTTTATTTGAGCTTTTTGAGAATGTGATTGAAGACGTGTTGAGTGCTAATCATGAAATAAATTCCTGTTCaaat

Function

GO: NA

KEGG:

id description
K23820 SUSD2; sushi domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018648 True 4043 mRNA 0.44 15 17071354 17090022

Neighbor

gene id symbol gene type direction distance location
AMCG00018641 NA coding upstream 637051 16419039 ~ 16434303 (+)
AMCG00018636 pgam5,LOC107089933 coding upstream 692653 16373896 ~ 16378701 (+)
AMCG00018638 ranbp1,LOC106580467,LOC107684983 coding upstream 772643 16296038 ~ 16298711 (+)
AMCG00018637 NA coding upstream 784691 16280833 ~ 16286663 (+)
AMCG00018635 NA coding upstream 792553 16256197 ~ 16278801 (+)
AMCG00018647 LOC106592780 coding downstream 51367 17141389 ~ 17149356 (+)
AMCG00018654 NA coding downstream 163133 17253155 ~ 17256857 (+)
AMCG00018655 NA coding downstream 200680 17290702 ~ 17296987 (+)
AMCG00018659 taok3 coding downstream 456938 17546960 ~ 17574431 (+)
AMCG00018662 NA coding downstream 487913 17577935 ~ 17584564 (+)
G117783 NA non-coding upstream 62108 17008898 ~ 17009246 (+)
G117768 NA non-coding upstream 321383 16748869 ~ 16749971 (+)
G117660 NA non-coding upstream 949909 16083353 ~ 16121445 (+)
G117573 NA non-coding upstream 1372489 15695426 ~ 15698865 (+)
G117574 NA non-coding upstream 1376101 15693213 ~ 15695253 (+)
G117801 NA non-coding downstream 63760 17153782 ~ 17155824 (+)
G117804 NA non-coding downstream 70740 17160762 ~ 17161040 (+)
G117805 NA non-coding downstream 71492 17161514 ~ 17161723 (+)
G117808 znrf3,LOC106584905 non-coding downstream 133990 17224012 ~ 17224609 (+)
G117813 NA non-coding downstream 160847 17250869 ~ 17253023 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 1684 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 2089649 14954564 ~ 14981705 (+)
G117383 NA other upstream 2283221 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 2294244 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 2659075 14408958 ~ 14412279 (+)
AMCG00018681 NA other downstream 891118 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 1629184 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 1737575 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 1804313 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 2133146 19223168 ~ 19234351 (+)

Expression


Co-expression Network