AMCG00018651 (LOC106920899,LOC106940379,LOC107600134)


Basic Information

Item Value
gene id AMCG00018651
gene name LOC106920899,LOC106940379,LOC107600134
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16912767 ~ 16923594 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018651
GTGTGGCAGTGCGGGGGAAGTATGGAGGTACTGCCCTGTGCCCGAGTGGCTCACATCGAACGCACAAAGAAGCCTTACAATAATGACATCGATTACTATGCAAAGAGGAATGCGCTTCGAGCAGCCGAAGTGTGGATGGATGAGTACAAGTCTCATGTGTATATGGCATGGAACATACCCATGAATAACCCTGGAGTTGATTTTGGGGATGTTTCGGAAAGAATCGCTTTGCGTAAAAAATTGCAATGTCGCAGTTTCCGGTGGTATCTGGAAAATGTCTACCCGGAGATGCGGATTTACAATAATACTATCACGTATGGAGAGGTGAGGAACAGCAAAGCCAGTGGCTACTGCTTAGACCAAGGATCTGAAGATGACGATAAAGCCATTCTCTACCCATGCCATGGGATGTCATCTCAGAATGGGCCAatcatcagcagggacacaggACGCTGCCTAGAAGTGGAAATGTCCAAAGATGCCAACTTTGGGTTGCGGCTAGTCGTACAGAGATGCTCAGGGCAGAAGTGGATGATCAGGAATTGGATAAAACACCCTAGACATTAA

Function

NR:

description
PREDICTED: polypeptide N-acetylgalactosaminyltransferase 9-like isoform X1

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016740 transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018651 True 567 mRNA 0.47 4 16912767 16923594

Neighbor

gene id symbol gene type direction distance location
AMCG00018646 LOC106580457 coding downstream 164806 16747653 ~ 16747961 (-)
AMCG00018645 NA coding downstream 427179 16464741 ~ 16485588 (-)
AMCG00018644 chfr,LOC100195666,LOC106580459,LOC102788874 coding downstream 450404 16438631 ~ 16462363 (-)
AMCG00018643 NA coding downstream 503172 16394956 ~ 16409595 (-)
AMCG00018642 LOC102797792,LOC102795364 coding downstream 521379 16378703 ~ 16391388 (-)
AMCG00018649 galnt9,LOC103141400,LOC106920899,LOC106962167 coding upstream 39449 16963043 ~ 16977083 (-)
AMCG00018650 NA coding upstream 144618 17068212 ~ 17070690 (-)
AMCG00018652 znrf3 coding upstream 232626 17156220 ~ 17168116 (-)
AMCG00018653 znrf3,LOC106584905 coding upstream 255495 17179089 ~ 17224239 (-)
AMCG00018656 NA coding upstream 343995 17267589 ~ 17290539 (-)
G117710 NA non-coding downstream 616322 16294830 ~ 16296445 (-)
G117646 tbx1 non-coding downstream 887694 16022598 ~ 16025073 (-)
G117501 NA non-coding downstream 1698336 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 1932383 14979041 ~ 14980384 (-)
G117441 NA non-coding downstream 2055172 14856420 ~ 14857595 (-)
G117809 NA non-coding upstream 230408 17154002 ~ 17155261 (-)
G117853 NA non-coding upstream 542540 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 591263 17514857 ~ 17515120 (-)
G117888 NA non-coding upstream 661157 17584751 ~ 17585098 (-)
G117916 NA non-coding upstream 811082 17734676 ~ 17736324 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 1394452 15498662 ~ 15518315 (-)
G117377 NA other downstream 2174455 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 2391892 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 2649613 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 3184897 13645368 ~ 13727870 (-)
G117784 NA other upstream 85304 17008898 ~ 17009301 (-)
G117823 NA other upstream 302496 17226090 ~ 17256271 (-)
G117899 NA other upstream 679762 17603356 ~ 17603848 (-)
G118075 NA other upstream 1542774 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 1614824 18538418 ~ 18547368 (-)

Expression


Co-expression Network