AMCG00018653 (znrf3,LOC106584905)


Basic Information

Item Value
gene id AMCG00018653
gene name znrf3,LOC106584905
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17179089 ~ 17224239 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018653
ATGATTTCACCACGGCGAGGGGGGGCTTATTTCGCAGATGCGGTGGTCCTGGTGCTCCTGGTGGCCACCACGTCTCCGGGACCGATCCTGGCCAAGGATACTGCCTTTGTGGAAGTGGTGCTCTTCGAGTCCAGTCCCAATGGAGATTACACGACGTACACCACGGGGCTGCAGGGGCGCTTCTCCAGAGCGGGGGCCACGATCAGTGCGGAGGGCGAGATCGTGCAGAGGGACTCAATCGCCGGCTTCTCCTCTACGTTCAACCTGGAAGAGACACATAAATCGGCCAAGGCCTGGGCCTACAGCTGCTGCGGTGCCTGTCTGCAGAACTCCTGTCCAGTTGACGTCAGGAATGCTGAAACTCTAGAGTCTAACCCTGCACACAGGCCCAGAGCTGGGAGACCGATGCTATCACGAGCCGGGAATTTGCCGCAGAGCACGAAGCTCACGGCACATCAAAGGGCCCTGTCCTCACCCGGCATCACGGCACACACAGGGGCGCCAAGGGAGACTCCCCCCACTGCCTGCGTTCTGCATGAGCGCAGGCCCGGGCCTGGCGGGTATGGATGGTCGGTGACCCCCAAGCGCAATGAAACTGCACCTCCACTGAGCTCTGCCAGCGGCCTGGTGCTTGATGTGGACATTGTTGCTGCCTTGGATCTCCCTCTCCCAGGCAACCGGCTCCTTTTGTCCGCTACCCCTCGCTGTTTGCCTGCAGACTTTTCCTTTTCCAAGTTATGGATGAGGTCTAGTGTTTGCCAGTTGCTGGCGGCTCCCCAATGGAGCTCCCAGTTCCCCATTCAGCCCGAGCTCCTCTTCTCAGGAGAGAGTTTGTTTGATCACCACAGGATGCACCCTTTGGGACTGTGTAACAATAATGACGAAGAGGACCTCTATGAATATGGCTGGGTTGGTGTGGTCAAACTGGAACAGCCTGAACTGGATCCAAGCTGTCTTACTGTCCTGGGAAAGTACACAGCTGGTATCTGCTTAATTAATCAGGAGAAATTAAAAGCCGAGCGATTCAGCATGAAAGAATGCGCCCGCTCTGGATACTGTTTTGCTGCAGaaaagaagaagaaggaggagaagaagaagaagaagaagaagaagaagaaaaaagaagaaaccaTGGGGACTTaa

Function

symbol description
znrf3 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in cellular protein metabolic process; negative regulation of Wnt signaling pathway; and stem cell proliferation. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be integral component of plasma membrane. Orthologous to human ZNRF3 (zinc and ring finger 3).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase ZNRF3-like isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018653 True 1143 mRNA 0.56 8 17179089 17224239

Neighbor

gene id symbol gene type direction distance location
AMCG00018652 znrf3 coding downstream 10973 17156220 ~ 17168116 (-)
AMCG00018650 NA coding downstream 108399 17068212 ~ 17070690 (-)
AMCG00018649 galnt9,LOC103141400,LOC106920899,LOC106962167 coding downstream 202006 16963043 ~ 16977083 (-)
AMCG00018651 LOC106920899,LOC106940379,LOC107600134 coding downstream 255495 16912767 ~ 16923594 (-)
AMCG00018646 LOC106580457 coding downstream 431128 16747653 ~ 16747961 (-)
AMCG00018656 NA coding upstream 43350 17267589 ~ 17290539 (-)
AMCG00018658 NA coding upstream 74025 17298264 ~ 17304621 (-)
AMCG00018657 NA coding upstream 84904 17309143 ~ 17316875 (-)
AMCG00018661 suds3,LOC102779790 coding upstream 292240 17516479 ~ 17529254 (-)
AMCG00018660 pebp1 coding upstream 350598 17574837 ~ 17576935 (-)
G117809 NA non-coding downstream 23828 17154002 ~ 17155261 (-)
G117710 NA non-coding downstream 882644 16294830 ~ 16296445 (-)
G117646 tbx1 non-coding downstream 1154016 16022598 ~ 16025073 (-)
G117501 NA non-coding downstream 1964658 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 2198705 14979041 ~ 14980384 (-)
G117853 NA non-coding upstream 241895 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 290618 17514857 ~ 17515120 (-)
G117888 NA non-coding upstream 360512 17584751 ~ 17585098 (-)
G117916 NA non-coding upstream 510437 17734676 ~ 17736324 (-)
G117933 NA non-coding upstream 536311 17760550 ~ 17761560 (-)
G117784 NA other downstream 169788 17008898 ~ 17009301 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 1660774 15498662 ~ 15518315 (-)
G117377 NA other downstream 2440777 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 2658214 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 2915935 14242545 ~ 14263154 (-)
G117823 NA other upstream 1851 17226090 ~ 17256271 (-)
G117899 NA other upstream 379117 17603356 ~ 17603848 (-)
G118075 NA other upstream 1242129 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 1314179 18538418 ~ 18547368 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other upstream 1520895 18745134 ~ 18746820 (-)

Expression


Co-expression Network