AMCG00018654


Basic Information

Item Value
gene id AMCG00018654
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17253155 ~ 17256857 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018654
TGGCTTTTAATATCGCGTAGCTGTCAGCGGAGGAGGAACTGCGGGGAGAAAGCAAGCCGTGACATTATTTCACCCCCAGTTCATCGACAGCGGCTCTGATTCAGATCCACCGGGGGATACGGCATGGTGGTTGTGACAGCAGGAGCGGGAGGCGCCCACAAGGTGCTGTTAATCTCCGGGAAACAGACAGCACCGTCCGCCGGCTCTCACGGGGGCTTCAGCCGGTCCATTTCGGTCATGTTGCCGTCATCCGGGACTCCGGCTTCCTCCGATTCGGATTCAAACGGATCCGGGCAGCCCCATCGGAAAAGGCAACGGCTCACACACTTGAGCCCCGAAGAAAAAGCACTTCGGAGGAAACTCAAAAACAGAGTAGCCGCCCAGACCGCCAGAGACCGAAAAAAGGCCAAAATGGGTGAATTGGAGCAGCAGGTTTTGGATCTTGAGTTGGAGAATCAGAAACTTCACATTGAAAACAGACTATTGCGTGAAAAGACGCATGGGTTGTTAACCGAAAACGAGGAACTGCGCCAGAGGCTGGGGTTGGACACCCTAGAAGCCAAGGAGAAGGTTCAGGTATTGCAGTCCAGGGTGGATGAGGTCAGTTTGGTGACCGGGTCTTCTGAGTCCGCAGCACTCAGGCTACGTGTGCCTCCGCAGCAGTCTGATATCTTGCTTGGCATTCTGGACATCCTTGACCCAGAAATGTTCCTCAAGTGCAGCGACTTGGAATCCAAGGAGCTGCCGCAGCTGGGAGAGGACGGGCTGGATTCAGTAcctgcctccccctctccatctGTGGGGTCCCCATCAGTTAAGCTGGAAGCCATTAATGAACTGATCCACTTCGACCACATCTATACGAAGCCTTTAGAAGAGGTGGTGTGCGTGGAGCAGAACGAAGAGAGCATCCCCGAAGTGAAGATTGAGGAGGTTTCCTTGGCGGTGGAGGAAGTGGTAGAAGTGGAGCCCGTGGAGGTCAAGGACGAGCCTGAGGAAGTGGAGCTGATCTCGGAGTTGAAGGTCAACGACTTCCTCACCTCGGTGTCTCCCAGCAACCCCGAAAAGTCATCTTGCCTGATAGATGCGTACAGCGACTCCGGATACGAACGATCCCCTTCTCCCTTCAGTAATATGTCCTCCCCTCTGTGCTCAGACAGCCCTTGGGATGATGTCTTTGCCAATGAACTATTTCCCCAACTAATCAGTGTTTGAGACCCTAATGTACAATTTGAATAGTCTTTTATGTGAAGTCTATTTTTGTAAACGATCATAACTACCTATATTTTGCTTTGCTACCACCACCCCATATGATTGGGATTATAGCTGCCCGCTGTAGACGACTGTTCGGATTAGACCAATACTAGCCAAACCATTGCTCTGTGTAATTGCCACAACCTAGTGAATTGGTCTTGGTCGGGTTCTCCTTCTCAGTCGAGTGACCCGCTTTGGGTTCCTATAAATCAGCAATTAAGTGCTGAAAAATGCACCTGCACTTGCTAGTGGTTGTGGGTAGATTCCAAATGTTGGGGATTTTAATATCCAGTATTCTGTAAATCCTGTCCTGTGTGGGGGAAGGGGGACCTTCTCGAGACcattttgtaagaaaaaataactatttatttctatttttttttttttccacgcCATTGAGTAATCAATTTAAACCTTTATTCCAGCATGTATAAGTGCATACATGTCCTTTGTTTTCCTCCTAATTTACGatgtaaatgtttcaattttcaTGATTTAAGGGGTTGCTTTCTTTACGGTATATTTaaagttctgcaaaattaaaacatgtgcaATGAATGATGTCTCTGTGGATTTATGACTTTTCTCTATTCATTCAAGGCAACTGTAGACTGATTACAGAGGAAGGGTAATTAAATGGTTGCCTAAAGATCTACTCGGAATTGTAGTCCTTGGCTGTCAATGTCTGTAATCTACACTGTAGTTTCTTTAGGGACCCCACCCAATTTAACTTCCCCTTCAAGGCTATAAACATGGCTTTCATGGCTGGCATTCCAGGATTGTTGAATTACATTATTCAAGTTCCCTGCTTAACTAGTGAGCCTTCATCTTGTCAGTCTCTAGGTCGTTTTGGTTTTGCTGGAGTGCTATTTAAAGTGTGATGACAAACGGCTTGAAGGATGgcagtatgtgtatataatccATACTAAAACAGTCTTGCACTCAACCTGTGAAAGTAATCtacagttttgcttttgcaggattttttttttttttcttcaaaggaCTATGTGAGATGTCTGTTGAAAGGCTACTCAAGTATAAAATGTAGTGTGATAATTGTTAATGACCAGAAATCTGGAAACTTCCGTAGTGCTGCCCCCTATTTCCATTCAAAGTAGCTCTGTGGTGAGAGCGAATTACTACAGGCCGATGAACT

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0035188 hatching biological_process
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
K09027 XBP1; X box-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018654 True 2413 mRNA 0.46 5 17253155 17256857

Neighbor

gene id symbol gene type direction distance location
AMCG00018647 LOC106592780 coding upstream 103799 17141389 ~ 17149356 (+)
AMCG00018648 NA coding upstream 163133 17071354 ~ 17090022 (+)
AMCG00018641 NA coding upstream 818852 16419039 ~ 16434303 (+)
AMCG00018636 pgam5,LOC107089933 coding upstream 874454 16373896 ~ 16378701 (+)
AMCG00018638 ranbp1,LOC106580467,LOC107684983 coding upstream 954444 16296038 ~ 16298711 (+)
AMCG00018655 NA coding downstream 33845 17290702 ~ 17296987 (+)
AMCG00018659 taok3 coding downstream 290103 17546960 ~ 17574431 (+)
AMCG00018662 NA coding downstream 321078 17577935 ~ 17584564 (+)
AMCG00018663 NA coding downstream 328663 17585520 ~ 17593696 (+)
AMCG00018669 ksr2 coding downstream 381410 17638267 ~ 17677169 (+)
G117813 NA non-coding upstream 132 17250869 ~ 17253023 (+)
G117808 znrf3,LOC106584905 non-coding upstream 28546 17224012 ~ 17224609 (+)
G117805 NA non-coding upstream 91432 17161514 ~ 17161723 (+)
G117804 NA non-coding upstream 92115 17160762 ~ 17161040 (+)
G117801 NA non-coding upstream 97331 17153782 ~ 17155824 (+)
G117887 NA non-coding downstream 327894 17584751 ~ 17585112 (+)
G117959 NA non-coding downstream 722154 17979011 ~ 17980939 (+)
G118005 LOC101154678 non-coding downstream 960946 18217803 ~ 18218099 (+)
G118013 NA non-coding downstream 1209511 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding downstream 1417417 18674274 ~ 18676226 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 183485 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 2271450 14954564 ~ 14981705 (+)
G117383 NA other upstream 2465022 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 2476045 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 2840876 14408958 ~ 14412279 (+)
AMCG00018681 NA other downstream 724283 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 1462349 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 1570740 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 1637478 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 1966311 19223168 ~ 19234351 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000071_03062277_03064334 XBP1 coding CI01000071 null 3061838 ~ 3064706 (+)