AMCG00018656


Basic Information

Item Value
gene id AMCG00018656
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17267589 ~ 17290539 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018656
GTGTAACCGTGGGCGACCAAACAAAACGCTGGAGCCGGGGAAGTGAGCGCAGGCGGCGACAGAGAGGGCTGTTGTGCTGCAGACCTCCATGCTTTACACTTCTACCTCAAACACTACACCAGCAATCCCTGTTAAGCATCAAGTATAAACTGCTCTTTGCTGCGGTATGTGAAAAGCAACGAGACCCTACttaattatgtatgtgttttcagAGATTGCAGCCATGCCCGTTCAGGCGAGCAAAGCTCTGGACCCGCGCAACTTCGTGCTGATCAAGCCGCTGCCCATCGCGCCTCCCGTGGGGGAGAAGCTGCAGGCCCGCAGCGCCACGGTGTTCAGCAGCCGGGAGCCCAGCCGGGAACAAGTGTTCAGGGACAACTACCAGCGCAGACTGCGGCAGCTGAGCCGGCAGGGCTACCGGGCGGCCAGCTGGAGGCCCTACGAGGAGGTCGGGGAGCCCCTGTACCTGGAGGCGGAGAAACTGATCCTCACCTCCCTGGGACAACTAGAAGAGCAGACTGGTGTGGAAGAACCTTCTGGAAGACTAGAGGACAATCAAGAATATGACTCCAACACAGCGCTCCCTGAGGCATCAGAGGAGAGTAAGAACTTGACATCAAATGAGACTCATCTGAAGAAGAGTGAGGACGAAGTGAAACATCTCCACAGACATCTGTCTCACACAAGGCGTCTGGTGTCTGCGGTGAAGCAGGGCCGGGGGTACTTTCAGATGCTGCAGAAGGAGGCCGTGGATCTTCAAAGAGCTCAGCAGGAGGAGCAGAGAAGACTAGCGGAGAGACAACGCACTGAGTGCCAGCCCCCCCTGCCCTCCTCAGAGGAGGATTCAGACAGCGACGGACCCACGCAGAGCTTTTTCAGAACCGCGTTACCTGCAGAACAAAGCCGGTTATCTGGGAAACATTCGAAAAGAGAGAAGATTTCAGCCGTGCGACCTTTCACCCCTGTTCACCGCTCTCTGACCTCTCCACAGCTGGCCGACACACCCCTGGAAACCATTTTTCGCCAGCTGTGCTGTCTGAATTGGCTTTTAGAGGCTTTGACACTGGAGCCTGCAGGTAGAGCAGGGCCTGTCTCATCTTGCTGGAATATAAAGGATCCTGGTAGAAGCAAGATGACAATAAAGCGTCTgaataaagaaaaagcaattgAGATCAAATGGGACCAGTTTATAACACAACCAAAGCCCAAAAAGTCTCCCTCAAGGGCGCTTCGCAAGCTGTCTGTGAGGCCCTGGAGAACGTCGCTCCTCAGCTGCTCTCGGCTGAGTGTCCTGTCTTCGGCTGTTACCCCTACGATGGGGAGCATGTCATCGCTGCCCCCCGGCTCTGACGACCTGCCAGCTGGAGCTGAGCCGGTCACTCCGAGGGGCGTCGGTCACTCAGAGGACGGAGATCCCGCAGCCAGCGCCGGTACTGCCCACAGCAAAGCCGACTCCGAGGCCCAGGCTCCGGTGTCAGACTACCTGGAGAAGCTGCTAGAAGCCGTTCACCAGAGTGTTGCCAAAGAGCTGCAGAGTTCGGGACAGCCGGGTGCGAATCCCAGTGACAGCTCTCCCATGTGTCAGCCCTCTGCAGTGAGTCAGTTCATCGCCAGTAAATCCTCATTGTCGTCTGAGATGAGAGCAAGATTCTCGGAGAAGGCAGAGGAAGTGGCCTTGAGTCTGAATGATACCTTGGAAAACAAAGCTAAgaaacGCTGGGAAAACGGTGTCCGTAAATTCCTGTCATGTGAACACTGGCCGCAAATTCAGCCTGACCTTCATGCAGTCCGAACTCCGTCAGTCAAACCCGAAACCGCCGAAACCAAAGAAAATCAGGATAGTAACACCTGGATGTCAGGGCTGTTGTCGAGCATCCCGGAAACCATCCTGGAAGATCGCAGCATTCGCTGTGTGTTGGACAAGTTGGTCAGGTTCGCCGATGGGCAGAGTTTGAGGATCAGGCCCAACCAATTCCTCAAGGTCCTGAGTGGCTTGCGCCTGTGGGAACTGTGTTCCCCCGATTTCTGCGTGGCTGTTGAGaTGGTCCGGGAGCACATTGTTCGGATGTCGAAAGCGGACTACGAGGTGTGGCTGTGGTCTCGAGTCACTGTGCCTCCGAGAGTACAGAGCGCTCCTGCCCTGAGGTAAATCTCTCAGGAGGGCATGGGAGTATATTGCCAATCAGGATTGGTCCAGTTTAAGGATGAATCAAAGGATTAGAAGCCAAATTCCAAGAGTAAGGTATCTTCTGGCCTCAGCCTTGCATCCCATGGCCAGCTGGCACTGATATATGCTCAGATAACTTACCTAGGGCTTGGTCTGGGCTTGATCTTAAATTGAATCCACAAGCATTGCATTGTTTGTATGATAGTGTTCCCCAGTATGCTGGTGAATCTCATGCAAATTATAATTTCTTTAGAAGTGGGAAAATAGACCCTAACCTGGTGATCTTCATTGTAATGACAGATAAAATGGTGACATTTATTCCGAACATGGATTCTGACACCCACATGAAGCATTCAGTGCAGCTGTTAAAGGGAATCGCAAATTTCCCAGTGTTTCAGCTTTCTGATACTATGGATCTGTTTCTTGTCACAAGATGATGAAACCGATAATGGAAATTGCTTCTTGTGTAACACTAGGATGGTGAAAGATATCTCATAAAAACAGTGCAGACATATCTGTGAATGTGGGTCTGCCGTAAAGATCTTGTGTAGAAAACTACAGTATAACCAATATACTTTTGTGTAGTTTCGTAATCTATTGGAACTTCTTCAAATTCGTTTCTGCTCTGTTAATTGTCAAAATCAACACTTAACAATTCCAACCGCAGATAATTAACTTGTAAAAGTTGAGACACAATTATGTATATGGTAAAGTCTGTTAAGCATTAAAGAGGAAATTGAGAATTGGATTTCAAGTTCGCTTtttccttcccctctctctatctctctctctcatcattCTGGTGATTTCCCCTTGTATGAGTTGTATCTCAGGGTGAGTGATACAATTTAGTGTGAAAGATTTCGCCCGGCAGTGTGTCTTTGCCCCAGTGAGAAGCTGTCCTGTGCTGTTGGCAGCAGATTAGTCTCCAGGGCAATGTGTCAAGGGGGTCAAAGGTCGCCGCTGCCCAGAGGAGCGACAGTGCAGTTAAAGTAGTGCTTGTGTGGGGGGGAGGCTAAAGCGATCAAGTGAAGACAAAGATGAAGGCTTATGTTCTGAGGGCAAAATTGTTCTGgatggtggggtgggggggagtttTGTCCTAGCAAGGGTACGTGACAATTTTAGATTAACCCCACGTTTGAGTCAGGTGATATCTTCAAATAGGTATACATTGCCTCTGGGAAACGAAAATAAATGGCATTTTGTGAGGCTGgacaacatttcagtttttacacCTGAAAGTGACTTCAAAAGGTTTCATTTCCAGGATGCTTCACAGTTTATAATTGGCAGCCGTTTCTTGCAGTGTTATTTCACACAGCGTTAACTTGACAAGTCCAATTTTCAGTATCTTCTGACATTAACTGAGACTTTTCAGTGATGCCActcaataattatttattctgtcaTAAAACCTCACTGCTGATACGTTGACCCCCGTATAAATGTAAGCagacatttgtttctttaaagatgGTAGTAAAGTGTCTAAAGATGATTTTAAAAGAACGGGATGGCTATACACCAGAAGTATGTGCTAAATTCTGTGTAAGGGGTATCTTTTGGAAGGCAGGCTCCCTTTGGTGTAATTTTATGGTATACTCACATGGGGGCGCTTTAGCATTactgtgtatataaaacatgcTGATTGAATGGGCACAAAGGCATACAATTATAAGAGCAAACCAAACTGCACATGTATGATAAAAAGGAAACTTGTGATTATGTTAAGTGGAAAGTAATTTTCTTATGTATCTTTATGTTCCCAGCATGTAAATAGTTTGTAGGGGGAAAATTCAATATTTGCTTTTCAATTACTATCAGAACACACATTGGCTGACAGTTGTGAAAGCTGACTTGGCGGTGTTCGGTGTAGAGTTTCCTGTTTGTGAGCAGGGCTTGTTGTGAAATCATGAAATGGCAAAAAACTACCAAAAAAACGTTACTGGAAATGTTAAATGTACGACGATACAAAGTGTTGACTGTGTGTAATAGCTGATAGTATCCagaaatatgttaattaatgtaattgcttacaaaaaataaaataacttatttttcagACATTA

Function

GO:

id name namespace
GO:0031231 intrinsic component of peroxisomal membrane cellular_component
GO:0005779 integral component of peroxisomal membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018656 True 4239 mRNA 0.47 13 17267589 17290539

Neighbor

gene id symbol gene type direction distance location
AMCG00018653 znrf3,LOC106584905 coding downstream 43350 17179089 ~ 17224239 (-)
AMCG00018652 znrf3 coding downstream 99473 17156220 ~ 17168116 (-)
AMCG00018650 NA coding downstream 196899 17068212 ~ 17070690 (-)
AMCG00018649 galnt9,LOC103141400,LOC106920899,LOC106962167 coding downstream 290506 16963043 ~ 16977083 (-)
AMCG00018651 LOC106920899,LOC106940379,LOC107600134 coding downstream 343995 16912767 ~ 16923594 (-)
AMCG00018658 NA coding upstream 7725 17298264 ~ 17304621 (-)
AMCG00018657 NA coding upstream 18604 17309143 ~ 17316875 (-)
AMCG00018661 suds3,LOC102779790 coding upstream 225940 17516479 ~ 17529254 (-)
AMCG00018660 pebp1 coding upstream 284298 17574837 ~ 17576935 (-)
AMCG00018664 rfc5,LOC107668751,LOC107716544 coding upstream 303648 17594187 ~ 17600940 (-)
G117809 NA non-coding downstream 112328 17154002 ~ 17155261 (-)
G117710 NA non-coding downstream 971144 16294830 ~ 16296445 (-)
G117646 tbx1 non-coding downstream 1242516 16022598 ~ 16025073 (-)
G117501 NA non-coding downstream 2053158 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 2287205 14979041 ~ 14980384 (-)
G117853 NA non-coding upstream 175595 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 224318 17514857 ~ 17515120 (-)
G117888 NA non-coding upstream 294212 17584751 ~ 17585098 (-)
G117916 NA non-coding upstream 444137 17734676 ~ 17736324 (-)
G117933 NA non-coding upstream 470011 17760550 ~ 17761560 (-)
G117823 NA other downstream 11318 17226090 ~ 17256271 (-)
G117784 NA other downstream 258288 17008898 ~ 17009301 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 1749274 15498662 ~ 15518315 (-)
G117377 NA other downstream 2529277 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 2746714 14503403 ~ 14520875 (-)
G117899 NA other upstream 312817 17603356 ~ 17603848 (-)
G118075 NA other upstream 1175829 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 1247879 18538418 ~ 18547368 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other upstream 1454595 18745134 ~ 18746820 (-)
AMCG00018715 ankrd13a other upstream 1547215 18837754 ~ 18845144 (-)

Expression


Co-expression Network