AMCG00018658


Basic Information

Item Value
gene id AMCG00018658
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17298264 ~ 17304621 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018658
atGAGTTACAAGTGGGTTGGCCAAAGTGCCGAGCGCCGGGAGTTGTGAAAGACCGGCACTGGGCAGATGGCTAAACTTGGACACATGCTCATCATCCCTCCATGGTCCCCGGGACACGTCAGCTGTTGCGCGGCGCACATTCTGCTCAAGGTGTTTCATGATCCAGTTTAAGCCCCAGTGACCGAGAGAGCCGCACCTGCTGGGGGACCCCCGGCATATAAACCTgccccgccgccgccgccccACAACACGGCCTGATCGTCCCGGGCTTCAGTCGCCGGACGCAGGAGGGATTGCAGCAGAGATTCAACATCACAAAGTGGGTTGCTGTGATTGAACACATACAGGGGGTCGGATAACACCTCTGATGTGGCCTTAGCCTACTCCATATACAGCTAGACCAGCATCAGATCGAGTATATTGAAGGTGCAGCCAGTGTAGCAGAATAAGTAAGTTTGCTTGTGTGACACTTTACACAATGGCGGATGGACACTTTTATACGACGGGCGGCAGACAGAGGACTCCGCGGGATCCCTTCAGAGATCAGTCGCTCGGCTCCCGGTTCCTGGAGGATGATTTCGGCATGACCCCCTTTGCGGACGACCTGTCCATGGACTGGCCGGGCTGGGCGAGGCCCCGACTCAGCTCCGCCTGGCCCGGGACCCTGCGCTCCGGCTTCTCTCGCTCCTCCCCGGTCGCGGCGCCCGGGTACGGCGGCGGCCGGTACAGCGAGCCCCGCGGCGCAGCCAGCGTCCCGGGCGAGCCGTGGAAAGTGTGCGTCAATGTGCACAGCTTTAAACCGGAGGAGCTCAATGTAAAGACTAAGGATGGCTTTGTGGAAGTGTCGGGCAAACATGAAGAACAGCAAGAAGAAGGAGGCATTGTTTCGAAAAACTTCACTAAGAAAATCCAAATACCTGGAGATGTCGATCCCCTCACGGTTTTCGCCTCCTTGTCCCCTGAAGGTGTTCTCATAATCGAAGCCCCTCAGACGCCTCCGTATTACCTCTTTGGCAGTGAATTCCCAGGAAACGAAGGAGAAGACCCAGAGTTTACAGCTCAGGAAACAACTGTGGCTTAA

Function

GO: NA

KEGG:

id description
K08879 HSPB8; heat shock protein beta-8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018658 True 1081 mRNA 0.57 3 17298264 17304621

Neighbor

gene id symbol gene type direction distance location
AMCG00018656 NA coding downstream 7725 17267589 ~ 17290539 (-)
AMCG00018653 znrf3,LOC106584905 coding downstream 74025 17179089 ~ 17224239 (-)
AMCG00018652 znrf3 coding downstream 130148 17156220 ~ 17168116 (-)
AMCG00018650 NA coding downstream 227574 17068212 ~ 17070690 (-)
AMCG00018649 galnt9,LOC103141400,LOC106920899,LOC106962167 coding downstream 321181 16963043 ~ 16977083 (-)
AMCG00018657 NA coding upstream 4522 17309143 ~ 17316875 (-)
AMCG00018661 suds3,LOC102779790 coding upstream 211858 17516479 ~ 17529254 (-)
AMCG00018660 pebp1 coding upstream 270216 17574837 ~ 17576935 (-)
AMCG00018664 rfc5,LOC107668751,LOC107716544 coding upstream 289566 17594187 ~ 17600940 (-)
AMCG00018675 c21h12orf49,clg12h12orf49,LOC104923683,LOC104949818,LOC103134957,LOC107087327 coding upstream 488944 17793565 ~ 17797572 (-)
G117809 NA non-coding downstream 143003 17154002 ~ 17155261 (-)
G117710 NA non-coding downstream 1001819 16294830 ~ 16296445 (-)
G117646 tbx1 non-coding downstream 1273191 16022598 ~ 16025073 (-)
G117501 NA non-coding downstream 2083833 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 2317880 14979041 ~ 14980384 (-)
G117853 NA non-coding upstream 161513 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 210236 17514857 ~ 17515120 (-)
G117888 NA non-coding upstream 280130 17584751 ~ 17585098 (-)
G117916 NA non-coding upstream 430055 17734676 ~ 17736324 (-)
G117933 NA non-coding upstream 455929 17760550 ~ 17761560 (-)
G117823 NA other downstream 41993 17226090 ~ 17256271 (-)
G117784 NA other downstream 288963 17008898 ~ 17009301 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 1779949 15498662 ~ 15518315 (-)
G117377 NA other downstream 2559952 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 2777389 14503403 ~ 14520875 (-)
G117899 NA other upstream 298735 17603356 ~ 17603848 (-)
G118075 NA other upstream 1161747 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 1233797 18538418 ~ 18547368 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other upstream 1440513 18745134 ~ 18746820 (-)
AMCG00018715 ankrd13a other upstream 1533133 18837754 ~ 18845144 (-)

Expression


Co-expression Network