AMCG00018662


Basic Information

Item Value
gene id AMCG00018662
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17577935 ~ 17584564 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018662
GGAAGAGCTGGGAATAACCTGAAACAGGTATGAAATGCCAGCGCGTAGGGTACATCACAAGTGGAAAAAGCCATCGTGaaagttagttagttagttagttagttagttagttagttagttagtggAGTGATCGGCTCGGGTCTGGACATGTGTACAGGTGCACTGAAGCCTTGACGGGACGGTGAAGTCAGGTGACACATGTATGTAGGTCGGTAACAGGTGCGGTTTAGCCTTCACTGCAGGCCGTGCAggtacacagacacagagagagagagaaactgctgACAGCATGAGGGGGCTGGCATTTGCTTTTCATGCTCTATTGATATACGCAACAGGCGCTGCAGAGGCTGTGAAATTAGTGCACAGACTAGGCACTTTGGGAGAGAGCGTTGTGCTTTCTTGCAACTACACTGTGGCGAATGAATCGGCGTATGTGAAACAATGGGCCAAGGATGACCGCACAATTGTGAACTGGAATTCTTCATCTACAACATGGATCATTAGAGACCCACGCTTCTCCATAGTGGACAATGGGAGCCTGCAGATCAACAATTTAACAGCCTCTGATGAGAACATCTACCTTTGCGTGATCATACTATCAGGTGTTGAGGAGGACAGAACTGGCACTGAATTAACGATTGTCGATGGGCCAAACGAAGTGACGACTCAGATTGGACCCACAGCCTCCCTTCCTAATGGCACCCTCTATATTAAGATGGGCGCCAATCTTTCTTTAAACTGTTTTAGTCAGTCTTACCCACTGCTCGTGTTGAAGTGGATTGTGGACCCTCCTGCCCTAAACCATTCCAAGCTGCCCTCAGGAGACGGGCCCGCCTTGGAGTATACGTTGCTCAGTGTTGGATCACAAAACCAAGGCAATTACAGCTGTTCTGCCACAAATCCAGTCTCTAACAAGACGGTGACGAAGACCACTCTCCTGCTGGTTTACAATGCTCCCAGTAAGCATCCAGAGTGTTATTCTAAGATAGGAAACAATTCCACACAGCTCCTGCTGCACTGTATGTGGGAGAAAAGGGCGTACCCCACACCAACACTGCACTGGGCGGAGGAGAAAAGCACGCTGAGAGATGGAAGATCTGTTCTCAATGTCTCTGAAGCAAGTGACAACTTGGAGGTGTCATTAAACCGGTCACAGCTGTACGACGACCAAGTGTTCAAGTGCACGGGGCATCACCCAGTGCTGGGACCAGAGGAAGAGAAGTCCTGCTCTCTGACCTTAAAGGCCCCGTATCCAAAAGGACAGCCCCTGGCCATCGGGTTTGTTGGAAAGAATGTGAGTTTATCATGCACAGAGGACCGCTCTATCCCTGTGGCGACAACCACATGGCGAAGGACAAAGGAGCAAGTGGAAATCCTTCCCAGCTCCAAGTATATCATTTCTCAGGAGGGGCCCGTGTTCACCCTCACCATCGTGAACTGCTCCAAAGAGGATGAAGATGTTTACTTCTGCAGAAGTGAGAATCCTATCAAAGTTATGGAACTGGAAGTGTCCCTTACAATAGAAACATCCAATACAGGTGCAGTAATTGGTGCATTCATTGCAGTTTTAATTGTCGCAGCAGGGATTTTTATTGGCAGCCTAGCGTACTCCTATCGGGACAGGATATGCCTGGGCAATGCCTTCAGGAGTGAGGAGAGGAATGATGTGTTGGAGCTGGTGGACTCTGACTCGGACTCGGACGCAGTTTATGATGAGTCTGTGACTCGGATCGTTGCAGTAGCTAACGGACATGCCTCATCGCTTGTGCAAATCCACCCCATTGCTCCCAGTGACCAGGATGATATCAAGAGCATTGATGcagaaaaggaagaagaaaacacacatgaGGAAGTTCTAGTGACATTTTAGCTTTCAAAAAGGaggattattttgtttattttatataattgtatttacattttacagtaagatGAGATGAGTTGTCATTTTCGAGGGTAGGAGACCAGTATTCTGGCATAATGAAGATTTGGCCTGGTTCTTATTGTTCGTTTGCTTGGAGTTGGCAATGACAATTTTGGCAAGTGCATATGGATAGCAACAGCATGAACTTTGTCAATTTGACACACTACAtcatgtttgtatatatacatgttttgttgttgtacaaATAGCCAATGCTGGCTTACTCTACTACTTGTTAAacttgtatgtattgtaattatattgttttaagtacaaatgcactttttaaaaaggtttttcagggttttttctttttgtgtgtgtgtgtgtgtgtgtgtgtgtgcttgcacTGTAAGCTTCTATCTAATGAAAAGTAATACTTACTTTgccttattttttataaaattatacaGGCAAGATGTATATGGGGGTAAAATCATTGGTAAAATTAGTTTTGTATAGCATTAAATGATAGTGTTAGAAATTCAGTATGAAAACTTTGTGCAGTTGTTTTCAGTGAGTTTACTGTGGGAAAGTGATGAATGCAAATATTTCCAGAAGGCTTCTATACTCTCAATTATTTCCACTATGGTATAAGAGTcctattgtatttgttaataatttAGTATTCAATGTTCTGTTATACAGTTTGTTTCTAGTTCTCcagaagtttaaattaaatcttcCATAAACCTTTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018662 True 2628 mRNA 0.44 9 17577935 17584564

Neighbor

gene id symbol gene type direction distance location
AMCG00018659 taok3 coding upstream 3504 17546960 ~ 17574431 (+)
AMCG00018655 NA coding upstream 280948 17290702 ~ 17296987 (+)
AMCG00018654 NA coding upstream 321078 17253155 ~ 17256857 (+)
AMCG00018647 LOC106592780 coding upstream 428579 17141389 ~ 17149356 (+)
AMCG00018648 NA coding upstream 487913 17071354 ~ 17090022 (+)
AMCG00018663 NA coding downstream 956 17585520 ~ 17593696 (+)
AMCG00018669 ksr2 coding downstream 53703 17638267 ~ 17677169 (+)
AMCG00018670 nos1,LOC102776628 coding downstream 119930 17704494 ~ 17728160 (+)
AMCG00018671 NA coding downstream 148015 17732579 ~ 17740121 (+)
AMCG00018672 nipsnap1,LOC106579802 coding downstream 158388 17742952 ~ 17749119 (+)
G117813 NA non-coding upstream 324912 17250869 ~ 17253023 (+)
G117808 znrf3,LOC106584905 non-coding upstream 353326 17224012 ~ 17224609 (+)
G117805 NA non-coding upstream 416212 17161514 ~ 17161723 (+)
G117804 NA non-coding upstream 416895 17160762 ~ 17161040 (+)
G117801 NA non-coding upstream 422111 17153782 ~ 17155824 (+)
G117887 NA non-coding downstream 187 17584751 ~ 17585112 (+)
G117959 NA non-coding downstream 394447 17979011 ~ 17980939 (+)
G118005 LOC101154678 non-coding downstream 633239 18217803 ~ 18218099 (+)
G118013 NA non-coding downstream 881804 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding downstream 1089710 18674274 ~ 18676226 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 508265 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 2596230 14954564 ~ 14981705 (+)
G117383 NA other upstream 2789802 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 2800825 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 3165656 14408958 ~ 14412279 (+)
AMCG00018681 NA other downstream 396576 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 1134642 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 1243033 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 1309771 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 1638604 19223168 ~ 19234351 (+)

Expression


Co-expression Network