AMCG00018663


Basic Information

Item Value
gene id AMCG00018663
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17585520 ~ 17593696 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018663
CGCGTCAGCGGGGAAGCAGGAAGCGGCGCAGCGGCGCAGCCTTGGCCTTGGACAGGGCTTATGTAGAAATACGTATATTTGTGAAGATGTCGGGGTTTATTTCATTATcacggttttgttttttctcccgtGATAACCACTAGAGGAAACACGCAGAAGTAGGAAGTCGGAAGTGTTGTTATTTGCTGGCGGTGTCTGTTTGCCGTTGGATGGAGTCAGGGTCGCAGGTGATTTCACTGCtggggaaaatacatttctgtttattcaAAAAACAACAGTCAGTCACATAGCTGAATACAAACGCACAGAGCAAGGCTTTCTTGACTTCAGCCATGCAGATGGACGTGAACCCCTTTGAGTACAAACCCAGGAGCAGAGACTGCAGAGAAAAGGCTACTTTGATTGGGGAGCTGAAGCCAGTTCACCCTCAGCCGCTGGACGGCCGGGCGGGCTGTGAGACCTGGAGTGTGGAGTTCTCTCCTGACGGGTCCTACTTCGCGTGGTCACTGGGCCACGGGATCGTGAAACTGCTGCTGGACCACTGGAGCTCAGCATGCaagaattacaattataatacagCCAGGaggaaaaacatgaagaaagagAAGACTTTGGACTGTGGGCAGACAGTGTGGAGTTTGGCTTTTGGACCACGTCTGTCTAAACACGCAGAAACTCAGATGCACGACTCAAAACCTGGACCGTCTACGGATGTTTTGTCAAGCTTACTTCTTGCCACAGGTCTAAACAATGGGAATATTAAAGTCTGGGAGGTCAGAACAGGTCATATTCTCTTTAATCTCACCGGACATCAGGACGTGGTCAGGGATTTGACCTTTGCACCCAACGGCGGATTAAACCTGGTTTCAGGTTCCCGTGATAAGACTCTCCGGATCTGGGACTTAACCAATGACCgtaaaaaagcacatgtattgACTGGCCACATAAACTGGGTCTACAGTTGCTGTGTTTCGCCCGACTGCAGCTTGATTGCTTCCGTTTGTGGACACAATCTAGTTTATTTATGGAGCATGCGGTCGTACACCTTCATCAAGAACCTGGAAGGCAGCCGCTACTTCCTGGTTTCCTGTGACTTTTCACCTGACGGGGCTCTGCTGATCACGGCTGCCTTCTCCAAGCAGATCATCCTGTGGGACCCGTACACCGGAGAGCCGCTTATGAAGCTGAGTCACTGCTTCCCTCCTCCATATTTTCCATCGGCCCCTGACATCTCAGTGAGAGCAGTACGCTTCTCCCCTGAAGGGTTATATTTTGCATCGGTTGCTGAGGACAGAGCTATGAGAATCTGGGCACTTGGGCTTGATGATCCAGTCGTTGACACAGAGGCTCCTGTTTCCAACGGGCTGTGCTGTGCATTCCACCCACAAGGGGGCATCGTCGCGACAGGGACGAGGGACGGGTACGTGCAGTTCTGGAGCACGCCGAGGATTGTGCCCAGCCTACGCCACCTGAGCCGCTCCTCCCTGCGCCACTCTGTGCCCACACACCAGGTAATGGCGCTGCCCATCCCCAACAAAATGAAGGACTTCCTAACGTACGGGACACTTAAACAATACCATGAAAGAACCGATCTGCACCACATGCAGGAAGTCCTCTCTCTGAACTAGAAGCACTGGAGCTGAGATTTTAAAAGACAGCTTTTCTAGGCTCGTATGCATGTACGAAACcgttacaataaatacataataatgaatgtttattacaggaATAATTTCTGCTACTGATAAAGTTTTTGTGAAATGTACTTGTTGATTACGTGAGATTATATAaagctttattaatttaaaatttatatttttataaattaatatatgccaaatttaattttttattgtatttttattttatggtcaACCTGCATTAAGAGCAGAAAAAGACATTCCGAAATGTTTTGCTGCCAGATAGGTTTAGaacttgatttgttttgtttttatacagatTTACAAACCCTAAAAACAAGCGACAGATAACTGAAGTTCACAAACATCAGATTTTATAGTCATATTTCTAAACTCAAACTGGAGATTTCCATAACATTCCAATAATATAATCATTACTTTACCGGTATAAACTCCTCACCTATACAAATAACATTGCTAAAGAccaaaccacattttatttattaaggatAGTTTTAGCCGTTGTAATGCTTCTGAAGTCTAAAACGAGAACATCTTAGAATAAGATGGAAGGACTGGGTGGtatttaaacctttattttcaaaggttgtacatgaacactttttttttttttttggtagtaaatatatttgtatatgtctTAGACAGTATGGTGTATACGTTTCCTTTGTGTACATTCTCAGTTCCACAGTACATCACTTCATATTTCATAACCATTTCATGCCTCAAACAGAATAACTGGGACGTAGGGCACACCTGTGATTTGTGAAACGTTTTTAACTTAGTGCTCAAAATTACttgatcatttttgtttttgtgtaatgcTGTGTAAACTGGAAATCGCCCcagataagggcatctgccaataaataaataattattaaagttaattttaGACAATATTAGGCTtaactgtactgttttttttgtgatttgaaATGCTCTACTGTTGAGCAGCTGTTCACAATTTGGCGACCACATTTCAGGCAGATTTCCAAATTAATTCTTCTGTGCTTTTAGACAGTACATGTGAATAGAAGTGCTAAACTCTACAGTATTGTCTTCCAGCCCCTGATTATATCACTTTATTGGATtactaaagccaaataaaatatttcaaacaattgTTGTGCATCAATTCTTTTAAatcatatacagttaggtccataaatatttggacagtgac

Function

GO: NA

KEGG:

id description
K10342 WSB2; WD repeat and SOCS box-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018663 True 2847 mRNA 0.43 9 17585520 17593696

Neighbor

gene id symbol gene type direction distance location
AMCG00018662 NA coding upstream 956 17577935 ~ 17584564 (+)
AMCG00018659 taok3 coding upstream 11089 17546960 ~ 17574431 (+)
AMCG00018655 NA coding upstream 288533 17290702 ~ 17296987 (+)
AMCG00018654 NA coding upstream 328663 17253155 ~ 17256857 (+)
AMCG00018647 LOC106592780 coding upstream 436164 17141389 ~ 17149356 (+)
AMCG00018669 ksr2 coding downstream 44571 17638267 ~ 17677169 (+)
AMCG00018670 nos1,LOC102776628 coding downstream 110798 17704494 ~ 17728160 (+)
AMCG00018671 NA coding downstream 138883 17732579 ~ 17740121 (+)
AMCG00018672 nipsnap1,LOC106579802 coding downstream 149256 17742952 ~ 17749119 (+)
AMCG00018667 gatsl3,LOC100696475 coding downstream 158627 17752323 ~ 17770536 (+)
G117887 NA non-coding upstream 408 17584751 ~ 17585112 (+)
G117813 NA non-coding upstream 332497 17250869 ~ 17253023 (+)
G117808 znrf3,LOC106584905 non-coding upstream 360911 17224012 ~ 17224609 (+)
G117805 NA non-coding upstream 423797 17161514 ~ 17161723 (+)
G117804 NA non-coding upstream 424480 17160762 ~ 17161040 (+)
G117959 NA non-coding downstream 385315 17979011 ~ 17980939 (+)
G118005 LOC101154678 non-coding downstream 624107 18217803 ~ 18218099 (+)
G118013 NA non-coding downstream 872672 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding downstream 1080578 18674274 ~ 18676226 (+)
G118285 NA non-coding downstream 1862446 19456142 ~ 19456983 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 515850 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 2603815 14954564 ~ 14981705 (+)
G117383 NA other upstream 2797387 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 2808410 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 3173241 14408958 ~ 14412279 (+)
AMCG00018681 NA other downstream 387444 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 1125510 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 1233901 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 1300639 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 1629472 19223168 ~ 19234351 (+)

Expression


Co-expression Network