AMCG00018664 (rfc5,LOC107668751,LOC107716544)


Basic Information

Item Value
gene id AMCG00018664
gene name rfc5,LOC107668751,LOC107716544
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17594187 ~ 17600940 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018664
GCCTCTGTTGCACAAAGCGTCTTCTGATTGGACAGCCGCCTGCCGTAAAGTGGTTTCTGCGGCGCACGGAGGAAGTGTGTTTACATGCACTTCATGTGGAAAACGCGCCAACTGCAGGATTGGGAGATTCAAGCGATTGTACTATAATAGCAAGTAGCACTTTTAAAACATGGCTTCAACGAGCAAGACGCCTTTGCAGTCAAGAAACTTACCCTGGGTTGAAAAATACAGACCCCAGACCCTAGACGACCTGATTTCACATCAAGACATTCTTACTACAATTCAGAAATTTATAAGCGAGGATCGGCTGCCACATCTCCTGTTCTATGGACCGCCGGGCACCGGGAAGACCTCCACCATCCTGGCGTGTGCCAAACAGCTGTACAAGATTAAAGAGTTCAACTCAATGGTTTTGGAGCTGAACGCATCGGATGACAGAGGGATTGATGTCGTCCGGGGACCCGTTCTGAATTTTGCCAGCACCAGGACCATTTTTAACAAGGGGTTTAAGCTGGTTATTCTAGATGAAGCCGATGCGATGACCCAGGATGCTCAGAACGCTTTGAGAAGAGTGATTGAAAAGTTCACCGAAAACACACGGTTCTGTTTGATCTGTAACTACCTGTCCAAGATCATCCCCGCGCTGCAGTCTCGCTGCACCCGGTTCCGCTTTGGCCCGCTGTCCCAGGAACAGATGGTCCCCAGGCTGGAGTATGTCATCCAGCAGGAGAACATTGATGTAACTCCTGATGGAATGAAGGCCATTGTGACTTTATCCACTGGAGACATGAGACGATCGCTGAACATCTTACAGAGCACCAGTATGGCCTATGGAAAGGTAACTGAAGAGACGGTGTACACCTGCACCGGCCACCCGCTGAAGTCAGACATCGCCAACATCCTGGACTGGTCGCTCAACAAGGACTTCACTGGAGCTTACAAACAAATCTTGGAGCTTAAGACGCTGAAAGGATTGGCTCTGCACGATATTCTGACAGAGATTCACCTTCTGTTACACAGAGTTGACTTTCCTCCTTCCATTCGCATTGGATTGCTCATCAAGTTGGCAGATATTGAGTATAGGTTAGCTTCGGGGACAAATGAGAAGATTCAGTTGAGCTCCATGATCGCTGCTTTCCAGGGTGCTCGGGATCTCGTGCTCTCTGATACCTAGGGCCCGACCGACACTTTCACACTTGAAAtgggatggaaaaaaaagactccACTCTTCCCAGATTTGTTGGAATAAATGAACAGACGCTGCAGAgaagcaattcattttcttcCAGCATTCCCCCAAATGTGTCGCCAGTCAATTAAGGACATTTGAAGCTGTTTCCGTAGAAACCTATGGTAGTGCTTTTACCTGGCTTATTAATGTTTGCATAAGAAACATACAATTGTAATCTAAATAAGTGGTTAAGCCCTCAGGCAATAAAGCAGCATGTATAATTAATTTTCCAAACATATGAAAATGCAGAACAAGATGTTACcttttgtaataaaacctttttgtaata

Function

symbol description
rfc5 Predicted to enable ATP binding activity and DNA binding activity. Predicted to contribute to DNA clamp loader activity. Acts upstream of or within retina development in camera-type eye. Predicted to be part of DNA replication factor C complex. Predicted to be active in nucleus. Orthologous to human RFC5 (replication factor C subunit 5).

NR:

description
replication factor C subunit 5

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10756 RFC3_5; replication factor C subunit 3/5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018664 True 1520 mRNA 0.46 11 17594187 17600940

Neighbor

gene id symbol gene type direction distance location
AMCG00018660 pebp1 coding downstream 17252 17574837 ~ 17576935 (-)
AMCG00018661 suds3,LOC102779790 coding downstream 64933 17516479 ~ 17529254 (-)
AMCG00018657 NA coding downstream 277312 17309143 ~ 17316875 (-)
AMCG00018658 NA coding downstream 289566 17298264 ~ 17304621 (-)
AMCG00018656 NA coding downstream 303648 17267589 ~ 17290539 (-)
AMCG00018675 c21h12orf49,clg12h12orf49,LOC104923683,LOC104949818,LOC103134957,LOC107087327 coding upstream 192625 17793565 ~ 17797572 (-)
AMCG00018677 NA coding upstream 204716 17805656 ~ 17805925 (-)
AMCG00018674 NA coding upstream 222729 17823669 ~ 17832605 (-)
AMCG00018676 fbxo21 coding upstream 233455 17834395 ~ 17840136 (-)
AMCG00018680 NA coding upstream 372495 17973435 ~ 17978220 (-)
G117888 NA non-coding downstream 9089 17584751 ~ 17585098 (-)
G117856 NA non-coding downstream 79067 17514857 ~ 17515120 (-)
G117853 NA non-coding downstream 127753 17466134 ~ 17466434 (-)
G117809 NA non-coding downstream 438926 17154002 ~ 17155261 (-)
G117710 NA non-coding downstream 1297742 16294830 ~ 16296445 (-)
G117916 NA non-coding upstream 133736 17734676 ~ 17736324 (-)
G117933 NA non-coding upstream 159610 17760550 ~ 17761560 (-)
G117978 NA non-coding upstream 264127 17865067 ~ 17866985 (-)
G117994 NA non-coding upstream 380889 17981829 ~ 18061544 (-)
G118008 NA non-coding upstream 698908 18299848 ~ 18300107 (-)
G117823 NA other downstream 337916 17226090 ~ 17256271 (-)
G117784 NA other downstream 584886 17008898 ~ 17009301 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 2075872 15498662 ~ 15518315 (-)
G117377 NA other downstream 2855875 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 3073312 14503403 ~ 14520875 (-)
G117899 NA other upstream 2416 17603356 ~ 17603848 (-)
G118075 NA other upstream 865428 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 937478 18538418 ~ 18547368 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other upstream 1144194 18745134 ~ 18746820 (-)
AMCG00018715 ankrd13a other upstream 1236814 18837754 ~ 18845144 (-)

Expression


Co-expression Network