AMCG00018665


Basic Information

Item Value
gene id AMCG00018665
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17779697 ~ 17782700 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018665
CTGGCATGCAGTACACAGACGCCAACCGCAAGCATGGGTGTTCTTCACTGGATACAATCAGTATTAGTTCTGACACATACAGTCTTCACAATTGTCGTGGAAACTACAAAACCAAACCCAGCCTGTGCAACCCAGATGAGGAGCATCAAATTAGCAACAATGATGGAGAGGAATTCTGAAGAACTCCTGAGAACTTATGTATCCAGACAGGGATTTTTCCAAAATTCCTGTACAGGGCAAGTGGAGGGCATCCCAGAGGCCCTGATTGCCGGTGATAAACCTGAAGAAAGACTGCTGAGTATGTACACGACTCTCAGAGTCTTACACAGACTCTTCATCACTGTGAGAGAACAGCAGAAGGACCTCCTTGAGTCAGACGACCCTCTTCGCAATATGCTTTTGGATGCTCAGACCCGAGTCACCCACCTTACTGGCAACTTGAAGATCATCCTGACCAATGTGTTCCCAGGAGTGGCCATTCCCCCAGAACACATCCCTGTTCCTCAGCccaaaataagttattttaagaAGAAGTTGTACGGCTGCAGGGTCCtgacaaaatacaatgaattcCTTTCTAAGGTAGTGCAAGAATTAACGGACATCAGAAAGTATGTGTGCACAGCCGTAGAAATTAAACTTACTGCAAAGATCAATTTGAGACTGAGGTTTCACGCTTTCAGGTGACTGGTGTTGGTGCGATGCCAAAGTCTCAACAACAGAATCgagaagaggggaaaaagacTCCACTAACCAGGGAAAGGCATCCAGCATAAGCCTTTTGATTGTGTTCTACAcgctttcttttcattttatgttgtaATTTATCTTCTCCTCTGAGATTAAACTTAATCAAACAGATCACCAGCGATGAATGGAACAGCAGggtagttttatttatatatttatatatttatttcaaattatttatagtCCGGCAGCAACCTGTTGATCaaagaatgtaatttaaatgttgtgttAAAGGCAGGCAACTCACTGatttctgtgtcagtgtgcgaAAGCATGTGGATTACAGCCAAGAATGTAGGTATGATATTTTAAGGAGAATATCAGCCATATTGGCTAGTTCatgtttacacatttaatgatgtatattaattataaatattaatgatcttggcatttaaatgaaaaaggtaTGCAAAATATTATATCTGAAGCACTAGATTTGTCCATCTAGTCTAAGTGGGTGGAGGCGTATGAACCCATTCAGGGTCATTCAGAGTGAAAGAGGGCTAGACGCTGACTCTAATCTCATGATACCAATTTATGTCTCGGGCACTTCCATCCTCAGAGTAGCATCATTTCTGACAGAGGTTTCAATTGCATAACTGAGAGATGACGACCTTCTATCCAGTTATCCAGTGCTGTACAGACAACTCATCTAGAAGAAATGCTTAATATTGTGTTAAcctaaaaatgtgtatatatttttttttaacttattttttcacattcatatGAAAATATAGATAATAAACATGCTAGACTTACTGGATGTGGCAGGTGCTTAAAgtaatcattttatatttatttttataaattatggAAGCATTTTGTATACCTTTTCtaagctgttttgttttgatgttatttaata

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018665 True 1621 mRNA 0.39 3 17779697 17782700

Neighbor

gene id symbol gene type direction distance location
AMCG00018667 gatsl3,LOC100696475 coding upstream 9161 17752323 ~ 17770536 (+)
AMCG00018672 nipsnap1,LOC106579802 coding upstream 30578 17742952 ~ 17749119 (+)
AMCG00018671 NA coding upstream 39576 17732579 ~ 17740121 (+)
AMCG00018670 nos1,LOC102776628 coding upstream 51537 17704494 ~ 17728160 (+)
AMCG00018669 ksr2 coding upstream 102528 17638267 ~ 17677169 (+)
AMCG00018666 NA coding downstream 4012 17786712 ~ 17789440 (+)
AMCG00018673 NA coding downstream 15253 17797953 ~ 17803948 (+)
AMCG00018668 NA coding downstream 24307 17807007 ~ 17823600 (+)
AMCG00018679 nf2,nf2a,LOC108431713,LOC107726729,LOC107599150 coding downstream 58052 17840752 ~ 17866985 (+)
AMCG00018678 LOC104923679,LOC100329495,LOC107386260,LOC102231850,LOC107599169 coding downstream 151045 17933745 ~ 17959525 (+)
G117887 NA non-coding upstream 194585 17584751 ~ 17585112 (+)
G117813 NA non-coding upstream 526674 17250869 ~ 17253023 (+)
G117808 znrf3,LOC106584905 non-coding upstream 555088 17224012 ~ 17224609 (+)
G117805 NA non-coding upstream 617974 17161514 ~ 17161723 (+)
G117804 NA non-coding upstream 618657 17160762 ~ 17161040 (+)
G117959 NA non-coding downstream 196311 17979011 ~ 17980939 (+)
G118005 LOC101154678 non-coding downstream 435103 18217803 ~ 18218099 (+)
G118013 NA non-coding downstream 683668 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding downstream 891574 18674274 ~ 18676226 (+)
G118285 NA non-coding downstream 1673442 19456142 ~ 19456983 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 710027 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 2797992 14954564 ~ 14981705 (+)
G117383 NA other upstream 2991564 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 3002587 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 3367418 14408958 ~ 14412279 (+)
AMCG00018681 NA other downstream 198440 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 936506 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 1044897 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 1111635 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 1440468 19223168 ~ 19234351 (+)

Expression


Co-expression Network