AMCG00018672 (nipsnap1,LOC106579802)


Basic Information

Item Value
gene id AMCG00018672
gene name nipsnap1,LOC106579802
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17742952 ~ 17749119 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018672
ATGGTGTGCTCTCGGGGAACTCACAAATTGCTTTATTCACAACTACAGCTACTATTAATACTAACAAATCTCCTCCCTCCATGTGACAGAGATTTTGCAGAGAAAGGCTGGTTCCAGTCTATGTTTGTGCACAAAGTTGATCCCAGGAAAGATGCCCACTCCAACCTGCTATCCAAGAGAGAGACCAGCAatctgtacaaaatacagtTTCACAATGTGAAGCCAGAGTGCCTGGAAGCCTATAACAATTTATCGGCCGAGGTTCAGAACCGGCTGCACTGTGACAAGGACTACCCCTGTGAAATTGTGGGCAGCTGGAACACCTGGTATGGGGAACAAGACCAAGCTGTGCACCTTTGGCGATACTCTGGAGGTTACCCAGCCCTGACGGAGAGTTTAAACATACTGAGACAGGACAAGGAGTACTTGGAATTCCGGAAGGAGAGGAGTAAAATGCTGATTGCACGAAGAAACCAGCTGCTCCTGGAGTTCAGTTTCTGGAACGAGCCTCTGCCAAGAAAAGGACCCAATATTTACGAGCTGCGAACCTACAGACTGAAGCCTGGAACCATGATTGAGTGGGGCAACCATTGGGCTCGGGCAATCAAGCATCGCCAAGAAAACCAAGAAGCTGTCGGTGGCTTTTTCACACAGATTGGAGACCTGTATGTTGTCCATCATCTGTGGGCTTACAAAGATTTGCAGTCCAGAGACGAGACCAGAAATTCTGCATGGCAAAAACCAGGCTGGGATGACAGCGTGTATTACACAGtgccATTGATTCGGAACATGGAGTCAAGAATCATGATCCCTCTGAAGGGCTCCCCTCTGCAGTAA

Function

symbol description
nipsnap1 Predicted to be active in mitochondrion. Is expressed in several structures, including endoderm; heart; liver; pectoral fin; and pleuroperitoneal region. Used to study Parkinson's disease. Orthologous to human NIPSNAP1 (nipsnap homolog 1).

NR:

description
PREDICTED: protein NipSnap homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018672 True 837 mRNA 0.48 9 17742952 17749119

Neighbor

gene id symbol gene type direction distance location
AMCG00018671 NA coding upstream 2831 17732579 ~ 17740121 (+)
AMCG00018670 nos1,LOC102776628 coding upstream 14792 17704494 ~ 17728160 (+)
AMCG00018669 ksr2 coding upstream 65783 17638267 ~ 17677169 (+)
AMCG00018663 NA coding upstream 149256 17585520 ~ 17593696 (+)
AMCG00018662 NA coding upstream 158388 17577935 ~ 17584564 (+)
AMCG00018667 gatsl3,LOC100696475 coding downstream 3204 17752323 ~ 17770536 (+)
AMCG00018665 NA coding downstream 30578 17779697 ~ 17782700 (+)
AMCG00018666 NA coding downstream 37593 17786712 ~ 17789440 (+)
AMCG00018673 NA coding downstream 48834 17797953 ~ 17803948 (+)
AMCG00018668 NA coding downstream 57888 17807007 ~ 17823600 (+)
G117887 NA non-coding upstream 157840 17584751 ~ 17585112 (+)
G117813 NA non-coding upstream 489929 17250869 ~ 17253023 (+)
G117808 znrf3,LOC106584905 non-coding upstream 518343 17224012 ~ 17224609 (+)
G117805 NA non-coding upstream 581229 17161514 ~ 17161723 (+)
G117804 NA non-coding upstream 581912 17160762 ~ 17161040 (+)
G117959 NA non-coding downstream 229892 17979011 ~ 17980939 (+)
G118005 LOC101154678 non-coding downstream 468684 18217803 ~ 18218099 (+)
G118013 NA non-coding downstream 717249 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding downstream 925155 18674274 ~ 18676226 (+)
G118285 NA non-coding downstream 1707023 19456142 ~ 19456983 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 673282 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 2761247 14954564 ~ 14981705 (+)
G117383 NA other upstream 2954819 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 2965842 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 3330673 14408958 ~ 14412279 (+)
AMCG00018681 NA other downstream 232021 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 970087 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 1078478 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 1145216 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 1474049 19223168 ~ 19234351 (+)

Expression


Co-expression Network