AMCG00018674


Basic Information

Item Value
gene id AMCG00018674
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17823669 ~ 17832605 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018674
CGGTTTCAGCAGTGCAGCTCCCAGACAACATTAGGACCCTGGGGAGATGTGTGAGCATCATTCTGCGAAGTACAATAATACTAGCTACATCATGCCCTGAGCTTTCCTTGCAACAAATGAAAGTAGAGCTGGGAGAGGGAGACTACAGTGCTCAAGTGCTCTTGTGTGATCATCTGAGCAGCCTCCACTCCCATCGGGAACTTCCATGTGAATGTGCGAAGAGCACACGCTGAACACGAAACGCACAGCAGTGCCAATGGGCGCTTTACATTCTGCAGCCCAGGAGCATGACTTTGGACAACTCGCCGAGGATACGGGCTTTTCCCTTGAGCAAACTGAGATTTTATACAAGAGATTTAAACAACTAAGCCAGAATGAGGACACTCTTCAAAGAGAAGCCCTTCACTCTATACCTGATCTGCAGTGCAACCCACTTAAAACCCAAATTGTGGAAGCCTTCTTTGACAAAAGGAACTTTGAGAAGGACGGCAGAGGGAAAGTGCAGGAGATCGGCTTCGAGCAGTTCCTCACAACCATGGCCCACTTCAGACCCCCGCAGATAAACTTGACTGCCGAAGAGCGGGAGGATCTGAGGAAGGAAAAGCTTCGGTTCCTCTTCAACATGCATGACACGGACAACGATGGCACCATCACCCTGGAGGAGTACAGACATGTTGTCGAAGAGCTCCTGTCTAAAAGTGGCAACATAGAAATGGAAACGGCTTCTGCCATAGCAGACGCCGCTATGCTGGAAGTTGCAAGCATCAGCGTGGGACCCATGACACCAGATGAAGTCTACGAAGGGATCACCTTTGAACATTTTCTGAAGaTCTTAAATGGCTTGGAAATTGAAACAAGGATGCACATACGCTTTTTAAACATGGACACCACCACTCTCTGCAAATGAGGATTTCCtttaaacacacaattacacaaccCTGTTTGCACACAGCAGACAAAAGTCATCTTTTTCTAGCTCTGCCCTTTCCTCCGCTGGGAAAGGGGACGGGTCAGTGAGCAGCTGGGAGGTGGGATTCTAACAAATGCATATATCCAAAAAAATATCCACGAActtctcattttaaattaatgtgagAAAAATATCGCAGCCTGTTCTGAGTGCAAGGAACAGAGTGTATTGGAATACAATCTAAATTTAGGTTCTCTCAGGGAATATTAAACCACAtgaaaaaccaaaccaaaatcTATCGACAGCAGTCAACTCAGGGGCACGTCTCTGCTGCCCTGAGGGAATTCACATGCTCGGTTGTTCCTGGTCAGATCAGAACTGGGATCAACAGGCCATTTACGCTGGAGAGGATCCAAAATGTTTTAAGGAGATGCATGGAATTCCTTGCTTGgttgtgaaaaaaacataacacatgCGAGTGTGGGTTTAATGCGATACACTTTGTTGTTAGTAAACTTTCATTAACAGGAAATAAGACCTCCTGATCATATCCCAGACACTTCACCGGTATCTTTGTATGAGCACTACACTACATATCTGCAGCACCGCCTTCCAGTCTACATCAGTGACCTGCTGTCAGTGTAACAGTGTAAACTGTACGCGACTTTCAGGTGCCCGATGTTGGATAAAAGCAATTTTCAGGGTCAAGACACACAAGATAGCAATGCATTATGGGTACAACACTTTGTGAGGCTGCACTTTATAGCATTTCGATTGCCAGTGATTATCGTCTTTCCTGCCACAAATTAGGCCTTTTTTGTCACTGTGAACTGTTTAACTGCCAAAAGGGTGTGCAATGGaatctttaaatgtaaaaaaaaaaaaaaactcaattaaatgcaaagatGAATTTAATCTTCCAGCGGAGCTCATAGCTAGCCTACAAACGTGCCTGCAAGACAGTGAGGAGAGGACCATTGCTTTATACTTACAGTACATACATCTCCTGCACTGTCCTGACAATCAACTCCACCTCTGTGTTTGGTAACTCTGACCTCTAGTGGCTTAAGATTGATTggtaacaaattacattttattaaaaataaaaaaaatgcatcggGTGACTCAAGGGACTGGTATGCAATTTTTAGatattcagaataaaaaatgttaagcTTCAATAAACTGAACTGTGCACCCTTACActgatattcatatttattttgttattaaggTTTTGAAGCCTTTTGTAAGTATGAGGATAGTCAATATATATGCTAAGGAATTCAATTGTTGTATTTTAGGAAATCCTTCAGAAATgattacacaatttattttgtgttgacaATTGAAACGTATTTAGACCAATTACAATTTtcgttttaaatgtaaatgcagctTTAACTATAATCTCGATTATATGCGTCTGATACACACAAACCTTATTGCTACATGTGCACACGTAAAACTTTATATACCACGTGTCTCATATCAGCAATGCTAAGCACTAAGCACTGTGCAAGATAACCAATGAACAGAAACAGTCACTGAAAAGCTGACTGAAGTAATGCATAGCTTAAGTAATGaagcagat

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K17612 TESC, CHP3; calcineurin B homologous protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018674 True 2504 mRNA 0.42 8 17823669 17832605

Neighbor

gene id symbol gene type direction distance location
AMCG00018677 NA coding downstream 17744 17805656 ~ 17805925 (-)
AMCG00018675 c21h12orf49,clg12h12orf49,LOC104923683,LOC104949818,LOC103134957,LOC107087327 coding downstream 26097 17793565 ~ 17797572 (-)
AMCG00018664 rfc5,LOC107668751,LOC107716544 coding downstream 222729 17594187 ~ 17600940 (-)
AMCG00018660 pebp1 coding downstream 246734 17574837 ~ 17576935 (-)
AMCG00018661 suds3,LOC102779790 coding downstream 294415 17516479 ~ 17529254 (-)
AMCG00018676 fbxo21 coding upstream 1790 17834395 ~ 17840136 (-)
AMCG00018680 NA coding upstream 140830 17973435 ~ 17978220 (-)
AMCG00018684 NA coding upstream 150024 17982629 ~ 17983909 (-)
AMCG00018682 NA coding upstream 151874 17984479 ~ 17985764 (-)
AMCG00018683 NA coding upstream 169138 18001743 ~ 18021214 (-)
G117933 NA non-coding downstream 62109 17760550 ~ 17761560 (-)
G117916 NA non-coding downstream 87345 17734676 ~ 17736324 (-)
G117888 NA non-coding downstream 238571 17584751 ~ 17585098 (-)
G117856 NA non-coding downstream 308549 17514857 ~ 17515120 (-)
G117853 NA non-coding downstream 357235 17466134 ~ 17466434 (-)
G117978 NA non-coding upstream 32462 17865067 ~ 17866985 (-)
G117994 NA non-coding upstream 149224 17981829 ~ 18061544 (-)
G118008 NA non-coding upstream 467243 18299848 ~ 18300107 (-)
G118010 NA non-coding upstream 481394 18313999 ~ 18314242 (-)
G118101 NA non-coding upstream 820161 18652766 ~ 18659398 (-)
G117899 NA other downstream 219821 17603356 ~ 17603848 (-)
G117823 NA other downstream 567398 17226090 ~ 17256271 (-)
G117784 NA other downstream 814368 17008898 ~ 17009301 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 2305354 15498662 ~ 15518315 (-)
G117377 NA other downstream 3085357 14736138 ~ 14738312 (-)
G118075 NA other upstream 633763 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 705813 18538418 ~ 18547368 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other upstream 912529 18745134 ~ 18746820 (-)
AMCG00018715 ankrd13a other upstream 1005149 18837754 ~ 18845144 (-)
AMCG00018723 NA other upstream 1205952 19038557 ~ 19047717 (-)

Expression


Co-expression Network