AMCG00018675 (c21h12orf49,clg12h12orf49,LOC104923683,LOC104949818,LOC103134957,LOC107087327)


Basic Information

Item Value
gene id AMCG00018675
gene name c21h12orf49,clg12h12orf49,LOC104923683,LOC104949818,LOC103134957,LOC107087327
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17793565 ~ 17797572 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018675
CTGGCTCGCTGCAGTGGGGCTCTTTCTGACGATGAAGACGTGCATTTCTGCAAAGGATAtattgtgcatgtgtttttttttttatatatatatacattaaggTCTCCCTTCTGTAATTAGCACTGTGCGATTTCGATTGGCggttcttttattttgttgcagcCTGCATGCTTACTCGTGTCATATAAGCGGTGATAATGCATTTAATACTGTACTTAGCGAGctagttttttttccaaaccagGTTATAACCCTCTTATAAATGCAAACTTAAACTCGTTTTAtagacagtgtgtgtatgtatatcatATGATTAGGTAGAATGGGTTAGCTGTGGAGTGCGTGCATATGTGATCTAAAATGTCctaaatgtaaacataacaTTTCAGACTAACACCTAAACGTCCAAGATGCACGTCGTGTTTGCAGCCCCCGATCTGAGCTGAGATTGACAATCCAGTCGGTATTAGATTTGCATTGATTTCCACGGACTCCAGTGATAATACACTCGTGTAAAGCGGCTCCATGGTGTTGCGCAGACTGCTGCGAAAGCGCTGGGTCCTCGGGGTCGTGTTTGGATTGTCCCTCATCTACTTCTTAACCAGCACACTTAAGCAGGAGGAGAGGGCAGTGCGGGACCGGACCCTTCTGCAGGCCAGGGACCCCGAGCATCGCATTGCCTGGAAAGTGCGCTTCAGCCTCGGCAACAGCAGCCGGCAGATAACCCAGTGCAGGAACTCAATCCAGGGCAAACTTCTCCTCACAGATGAGCTGGGTTACGTCTGCGAGAGGGAAGATCTGTTGGTGAATGGGTGTTGCAATGTGAATGCGCCGAGCACCAGGCAGTTCCTGTGTAAGAGCTGCCTTGCTAGTGGCTGCTGCAGTGTGTATGAGTACTGCGTCTCCTGCTGCCTCCAGCCAGATAAGCAACCTCTTCTAGAACGCTTTCTCAACCGGGCCGCAGAGGGATTCCAGAATCTCTTCGCCGCAGTTGAAGACCATTTCGAGCTGTGCCTGGCGAAGTGCCGGACCTCGTCACAGAGTGTTCAACATGAGAATACTTACAGAAATCCACAGGCCAAGTACTGCTATGGAGAGAATCCCCCCGAACTCCTGCCTATATAATTCGTCAGCCTTCGACCCTGGCAAAGATGGAAGAGAAATATCACTACAGGAGCCACCCTTGTGTGTCAAATGACTGAATGAAAGAAAGGTCCCTTTGaattaactaaacaaaaccaaggACTTTGCTGTATTTCCACTTATGAGGCGAATCTATTTAATTGGGAGGGAATATAAGATTGTGATGTGGAAGTGCTGATAgccttgtgtttaaaaaaatgtacgtCAACAGAAAGGGACATTGAAGAGAATTTGAATTTACACTTCATAAGTGCAAATAAGCCTCCATTACTTCATCAATGATGATTATCAGGTTTCCGAAACTCACACATCTCAGTTCTCACATGAAAAAGTGAAGAAAGATTAGGATTTTGTAGTCTGCcttgcagtgcagtgtgaagCTACAGTTCATTTTCAGCGGTGCTAGATGCTCTAGGCATATTCAATGTTGCTGCGAGATCCTTGATCCTTGTGCTCTTCAAAACCTGTTTCAGTAAAGCATGTTTTTTCAATTCCAGAAAAAGGAATTGTGTTAACTGTCACATGCCTGCATCCTTCCCACTGCCCATTTCcattcactttgttttgttggaaTCGTCACTAGCCTCACCCAGTAACCCAGTTTTGCAATATCATATTTTAACTCAAATTTCATATCATGTTCAGAAGGCTAAAAATACAACCTctgaattattcattatttgaatTTTATCTAAAGCAGAGCCCTTTTCatcttgtattttgtactgggttaaaaacagtttatttaaggtttggttttgtatttatgtttattttttcaagtaatTCGATGTTCACTCCGATACCTCAGCCCTTAAAACAGGATTGAAGAGACCAAGGacaatgttaatgttttgtttttatgatttattaatatatgtgcACAACAATGCATGATTGTAAGCAGTATGTTGCCGATTATGTGTTTTatctctatttaaaataataatactacacaaaaacaataaaatcacagCATGTTCCTTAGCTTTGCACATACCTTGGTGTTCAGTAATCCTGTTATGAAAGTGTACGCAATGTTTGAAACTTGAAGAAATCATGTAACATTCCCTATTAAAAAGCATAATGGCTCCTTTTTTGGCGTATCAGAGGTATACGAGCAGACTTCGGGGTTTTGGAAAATTGCTTAATGACAAGCAATCAATGAATGTCCCTTTTCTGAATTACATTTGGCCACAGTCATTAATTTCCTGGGTGCTCATTAGTTCCCcatgtcattaaaaaagaaaacaatgggcCTGACATCTCCGTTCTGGAAAGTAGTGCTTATTCAGAGAACCTTACCACCGCCGTTGAGTTTACTGATTATAGGGGAGAAAGCCAAAGGCCTGGGCTTGACATTGCTAAATCACAAGAATGCATTCTTTTTAAAGTGAGGCTCCTGCATGGAGGATCagacaaagataaaataattcaTCATCTtgattgcttaaaaaaataatctgcatgataattaaaaatatgatccataattttattttcctactAACTTGATTAATGAGGGTTAAAGGGTTGTTTTCTCAGTATAAATGTGTGAAACAAGCGCTGAACAAAGTGAATCCCATTAAATGGCATCTCAGATACActgatgcttttaaaaaaca

Function

NR:

description
PREDICTED: UPF0454 protein C12orf49 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018675 True 2768 mRNA 0.41 5 17793565 17797572

Neighbor

gene id symbol gene type direction distance location
AMCG00018664 rfc5,LOC107668751,LOC107716544 coding downstream 192625 17594187 ~ 17600940 (-)
AMCG00018660 pebp1 coding downstream 216630 17574837 ~ 17576935 (-)
AMCG00018661 suds3,LOC102779790 coding downstream 264311 17516479 ~ 17529254 (-)
AMCG00018657 NA coding downstream 476690 17309143 ~ 17316875 (-)
AMCG00018658 NA coding downstream 488944 17298264 ~ 17304621 (-)
AMCG00018677 NA coding upstream 8084 17805656 ~ 17805925 (-)
AMCG00018674 NA coding upstream 26097 17823669 ~ 17832605 (-)
AMCG00018676 fbxo21 coding upstream 36823 17834395 ~ 17840136 (-)
AMCG00018680 NA coding upstream 175863 17973435 ~ 17978220 (-)
AMCG00018684 NA coding upstream 185057 17982629 ~ 17983909 (-)
G117933 NA non-coding downstream 32005 17760550 ~ 17761560 (-)
G117916 NA non-coding downstream 57241 17734676 ~ 17736324 (-)
G117888 NA non-coding downstream 208467 17584751 ~ 17585098 (-)
G117856 NA non-coding downstream 278445 17514857 ~ 17515120 (-)
G117853 NA non-coding downstream 327131 17466134 ~ 17466434 (-)
G117978 NA non-coding upstream 67495 17865067 ~ 17866985 (-)
G117994 NA non-coding upstream 184257 17981829 ~ 18061544 (-)
G118008 NA non-coding upstream 502276 18299848 ~ 18300107 (-)
G118010 NA non-coding upstream 516427 18313999 ~ 18314242 (-)
G118101 NA non-coding upstream 855194 18652766 ~ 18659398 (-)
G117899 NA other downstream 189717 17603356 ~ 17603848 (-)
G117823 NA other downstream 537294 17226090 ~ 17256271 (-)
G117784 NA other downstream 784264 17008898 ~ 17009301 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 2275250 15498662 ~ 15518315 (-)
G117377 NA other downstream 3055253 14736138 ~ 14738312 (-)
G118075 NA other upstream 668796 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 740846 18538418 ~ 18547368 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other upstream 947562 18745134 ~ 18746820 (-)
AMCG00018715 ankrd13a other upstream 1040182 18837754 ~ 18845144 (-)
AMCG00018723 NA other upstream 1240985 19038557 ~ 19047717 (-)

Expression


Co-expression Network