AMCG00018678 (LOC104923679,LOC100329495,LOC107386260,LOC102231850,LOC107599169)


Basic Information

Item Value
gene id AMCG00018678
gene name LOC104923679,LOC100329495,LOC107386260,LOC102231850,LOC107599169
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17933745 ~ 17959525 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018678
ATGGGGTTGTTCTGCTTGACGGTCCTGATGAGACTGTTCTGCACAAAGATCCGGGAGGCATTTAAAGTGTTTGACCGGGATGGGAATGGATTCATCTCCAAGCAAGAACTGGGTATGGCAATGCGATCGCTGGGATACATGCCCAATGAAGTGGAGTTGGAGGTGATCATCCAGAGACTGGACATGGATGGGGACGGTCAAGTAGATTTCGAAGAGTTTGTCACTCTGCTAGGACCTAAGATCTCTACAGCTGGAATGCCAGATAAGTTTCACGGCACGGACTTTGACTCAGTATTCTGGAAGtgTGATATGCAGAAGTTAACAGTGGAGGAGCTGAAGCGGCTGCTGTACGACACCTTCTGTGATCACTTGTCCATGAAAGACATCGAGAACATCATCATGACAGAAGAAAACCACATAGAAAACCCAGAGGAGTGCCCAGTGGATATCGACACCAGCCCCACGCAGCAGATCAAGCAGACGTGTGTGCGGAAGAGCCTGATCTGTGCCTTCGCCATCGCGTTCATCATCAGCGTTATGCTCATCGCTGCAAACCAAGTCCTGCGGAGCGGGATGAAGTAG

Function

NR:

description
PREDICTED: calcium-binding protein 7

GO: NA

KEGG:

id description
K23849 CABP7_8, CALN2_1; calcium-binding protein 7/8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018678 True 582 mRNA 0.50 5 17933745 17959525

Neighbor

gene id symbol gene type direction distance location
AMCG00018679 nf2,nf2a,LOC108431713,LOC107726729,LOC107599150 coding upstream 66760 17840752 ~ 17866985 (+)
AMCG00018668 NA coding upstream 110145 17807007 ~ 17823600 (+)
AMCG00018673 NA coding upstream 129797 17797953 ~ 17803948 (+)
AMCG00018666 NA coding upstream 144305 17786712 ~ 17789440 (+)
AMCG00018665 NA coding upstream 151045 17779697 ~ 17782700 (+)
AMCG00018685 prodha,LOC100695866,LOC108439536,LOC107373658,LOC106514456 coding downstream 63502 18023027 ~ 18035628 (+)
AMCG00018686 NA coding downstream 178520 18138045 ~ 18139541 (+)
AMCG00018698 NA coding downstream 386432 18345957 ~ 18437784 (+)
AMCG00018697 NA coding downstream 568218 18527743 ~ 18528121 (+)
AMCG00018693 NA coding downstream 603008 18562533 ~ 18571339 (+)
G117887 NA non-coding upstream 348633 17584751 ~ 17585112 (+)
G117813 NA non-coding upstream 680722 17250869 ~ 17253023 (+)
G117808 znrf3,LOC106584905 non-coding upstream 709136 17224012 ~ 17224609 (+)
G117805 NA non-coding upstream 772022 17161514 ~ 17161723 (+)
G117804 NA non-coding upstream 772705 17160762 ~ 17161040 (+)
G117959 NA non-coding downstream 19486 17979011 ~ 17980939 (+)
G118005 LOC101154678 non-coding downstream 258278 18217803 ~ 18218099 (+)
G118013 NA non-coding downstream 506843 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding downstream 714749 18674274 ~ 18676226 (+)
G118285 NA non-coding downstream 1496617 19456142 ~ 19456983 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 864075 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 2952040 14954564 ~ 14981705 (+)
G117383 NA other upstream 3145612 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 3156635 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 3521466 14408958 ~ 14412279 (+)
AMCG00018681 NA other downstream 21615 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 759681 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 868072 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 934810 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 1263643 19223168 ~ 19234351 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031176 cabp7b coding NC_007116.7 CM002889.2 32086448 ~ 32092856 (-)
grasscarp (Ctenopharyngodon idella) CI01000339_06883625_06889375 CABP7, CABP7B coding CI01000339 null 6883055 ~ 6890499 (-)