AMCG00018680


Basic Information

Item Value
gene id AMCG00018680
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17973435 ~ 17978220 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018680
ATGGGGAAGCGGTATTACTGTGATTACTGTGACCGCTCCTTCCAGGACAACATGCACAACAGGAAGAAGCATCTAAACGGGGTTCAGCACCAAAGATGCAAGAAGGCCTGGTTCGACAACTTCAGAGGCAAgatcacaATGCAGCTGCGATCCTGGCCGATGAACGGACGAAAAAGCCTTGTAGGAAGTTTCTCCAGACAGATCATTGAAGCCGAGTCGGTTTTAGAAAGGGTTCAAGCAGACAACGGTAAACTGGTACAGGGTGAGAGAAGGCTTAAAGAGGACCGTGGACTAGGCAGAGTGCCTTCAGAGCGGGGCATCGAGGACTGGCTGGCacggagagagaagaggaaagcAGAACCTGGCTGCGAAAGcACTCTTGAGGAAGAAGGGGCTGAAGGTTCACTGGAGAGCGACTTGCCTCCTCATTTTCTTTCCATACCAGATCTCCCAGCCTCCCTTCTGCCTCCACCTCTTGGGGTTTGGATGAACACACCACGCACGGAGTGGGGATAAGAAAGCAAGGTTGTGCAAGGGCATAGactgacttttttgttttgtttgttgccCTGGATTTATCTCATTCTTACTGCTGCAGAGTAGAAGCCACAGTggaaacagcaaaacaaaaaaaggaaatcccATGGAACCACTTTCCGGTCATTCCACGGAGGTGCACTATGCTTTTCTACCTCAGTGGTTCAGAAACGTCTAGTCTGCTGCCCGTTTCACCCGTGAAGAAGCACCCAATGAATGTGCCCATGAGGTTCGACCACTTGACAATTGACGCAGAAGATGGTAGTGTTTTGCTGCCCATAGGACAATTTAGAAAGTCGCTTTTCCAATCCATTCCTTGTTGAACCAGTTGAGTGGATTTGGTTACACAAATTAGTTCTGCAAATAATgaaccaaaataaatgaatgtaagtCACGAGTGGTCCTTGCTTTTGGTATTGCACATCATGAAGGGGGCTGCTTTGTACAGTTGGTATTGTGACAGTTCATGTGTACTGCCTCCTGTCTCTAATCACAGCATGTGTGACACGGGCTGAGCCATGACAGTTAATGGAAATGAATGTTGCTTTGTCTAAAGGTcaacatgaaatacatttccaagGAAAGACTGAACTCTGTAATTGACTATGCTTCTCATGCTTCTTCCTTTAATCGCAATTTTAGAAAcgattatgctttttttttttttcgtcatAAACTGCAGAGCTGAAACAAACTCTTCCCGGTTTCAATAGATTTTCTGATCTCGATATGGTTCACTTGtgcattctgttttgtttgttatccCTATAATCtattttagaataaaaatataaacggGTTCTTTTTCTCTAGTATCTTTTATGAAATCTTAACATATAAAATGAACAGAATATGGATTTAGTTTCTGTGCTTTGATTTCCTACCTTTCCTGAAGTAGTTATTAACTAAACTATTAACTAAATAACTAACCTCACAGCTTTAAAGACCTTCGCAATGTGCTGCCTTTCTTGAATGCCTTTTAATAAGCCCGAGCTTCATTGCTGGAGAAGACGAATAAACGGCGTAGAAATTCACTCTCTTGAGATTCTCGCACATAATGAACTGCTTCAGAAACTTAGCTTCAGAAAATTGCCTTTCATTTCTGAAGTGCGGTTGATAATAGTTTTCGAGGAGCAGGGGATCTATTGCCCCCTATCTTACGAAACATATTGTTCTGCTGGTGCTATTGACTTCCTTTGAAATATGCCCACATTTCAGAGCTTCAGttatcaaagcattttttttttcttcctcgaCTGGTTAACAGCTGTAACAGTCTACCAACTTCATTACACTGGCCCTGGCTTTGAAGTCGTCGAGAAATGTGACCGTGATTCTTTTGTtataatgtgtatgtttgtgtgtgtctgtagtgtgtatgtgtctttTAAATTTAGAGTTTCATCCAACATTCTGCTCATTTTGATgatcattttacttttatttaaaggtaaaaaaaatatcttaataaacatttcaatccTG

Function

GO: NA

KEGG:

id description
K13152 ZMAT5; U11/U12 small nuclear ribonucleoprotein 20 kDa protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018680 True 2022 mRNA 0.42 5 17973435 17978220

Neighbor

gene id symbol gene type direction distance location
AMCG00018676 fbxo21 coding downstream 133299 17834395 ~ 17840136 (-)
AMCG00018674 NA coding downstream 140830 17823669 ~ 17832605 (-)
AMCG00018677 NA coding downstream 167510 17805656 ~ 17805925 (-)
AMCG00018675 c21h12orf49,clg12h12orf49,LOC104923683,LOC104949818,LOC103134957,LOC107087327 coding downstream 175863 17793565 ~ 17797572 (-)
AMCG00018664 rfc5,LOC107668751,LOC107716544 coding downstream 372495 17594187 ~ 17600940 (-)
AMCG00018684 NA coding upstream 4409 17982629 ~ 17983909 (-)
AMCG00018682 NA coding upstream 6259 17984479 ~ 17985764 (-)
AMCG00018683 NA coding upstream 23523 18001743 ~ 18021214 (-)
AMCG00018690 NA coding upstream 551202 18529422 ~ 18532311 (-)
AMCG00018689 LOC106585651 coding upstream 557305 18535525 ~ 18535910 (-)
G117978 NA non-coding downstream 106450 17865067 ~ 17866985 (-)
G117933 NA non-coding downstream 211875 17760550 ~ 17761560 (-)
G117916 NA non-coding downstream 237111 17734676 ~ 17736324 (-)
G117888 NA non-coding downstream 388337 17584751 ~ 17585098 (-)
G117856 NA non-coding downstream 458315 17514857 ~ 17515120 (-)
G117994 NA non-coding upstream 3609 17981829 ~ 18061544 (-)
G118008 NA non-coding upstream 321628 18299848 ~ 18300107 (-)
G118010 NA non-coding upstream 335779 18313999 ~ 18314242 (-)
G118101 NA non-coding upstream 674546 18652766 ~ 18659398 (-)
G118100 NA non-coding upstream 678245 18656465 ~ 18657534 (-)
G117899 NA other downstream 369587 17603356 ~ 17603848 (-)
G117823 NA other downstream 717164 17226090 ~ 17256271 (-)
G117784 NA other downstream 964134 17008898 ~ 17009301 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 2455120 15498662 ~ 15518315 (-)
G117377 NA other downstream 3235123 14736138 ~ 14738312 (-)
G118075 NA other upstream 488148 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 560198 18538418 ~ 18547368 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other upstream 766914 18745134 ~ 18746820 (-)
AMCG00018715 ankrd13a other upstream 859534 18837754 ~ 18845144 (-)
AMCG00018723 NA other upstream 1060337 19038557 ~ 19047717 (-)

Expression


Co-expression Network