AMCG00018683


Basic Information

Item Value
gene id AMCG00018683
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18001743 ~ 18021214 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018683
CTTCAACCGCAGGGAGACGTGGATGGTGTCTGCTCCTGCTGGTCTGGGAAACCTGGATTACTTTCGCCGTCGGGTCACTTTAATCCTACCTTTCACACACAGGAGAAAAGCAGAAATACAGACACAGCAGCGCAAACACAGAGATTATACTTAAAGTAAGTGAAACTCCCCCGTTTCGGAAAGGGAGGCATGCCCGAGCAAAGGAGTGTGTGGAAGGATGCTGTCTCttggaaaatggaaatgaagaACATCGGGGTAGTTGCCGTGGTTCTGGTTTTATTCTTTTGTGGGAGTTTCGGCCAAGAACTTAACCCAAAAGGCCGGAATGTGTGCAAAGGATCGCGTTCCCCGGCTTACGTGTGCTGCACTGGATGGAAGCAAGAGGGAGAGGAGTGTTTAACACCTGTGTGTGAGGGGAATTTCACCTGCAACGAGAACGAAGTTTGTGTGCGGCCCAATGAATGCCGCTGTCGCCATGGATACTTTGGAGCCAGCTGTGAGACCAAATGTCCAGCCCAGTTCTGGGGTCCCGAGTGCAAGAGGAAGTGCACCTGCCACCCCAACGGCCAGTGCGATGACGTGAGTGGCAAATGCACCTGCAACCCCAACCGCTGGGGGCCCAACTGCGAGAAGGCCTGCCTGTGTCAAAAGGGCAAGTGCAACCAGGAGACGGGCAAGTGCACCTGCAACACGGGCTTCTGGGGGGCCAACTGCGCCAACACCTGCTACTGCAACGTCATTTCGGTGTGCGAGCAGAGCACGGGCCAGTGCATCTGCAACCCGGGCTGGTACGGCCGCAACTGCGGCGCCCAGTGCAGCTGCAACAACTCCCCCTGCGAGCAGTTCTCCGGGCGCTGCCAGTGTCGGGACCGGCTGTGGGGCCCGCGCTGCGAGAGGTACTGCCAGTGCGTGCATGGCAAGTGCAACCCGACTGACGGCTCCTGTACATGCACCCCCGGGTACAGGGGCAAGTTCTGCCGAGAGCCCTGTCCCGCCGGATTTTACGGTCAAAACTGTCGAAGCAGGTGTGGGCACTGTAAAGGCATGCAGCCGTGCAAGGTGACCGAGGGGCGCTGTGTGACCTGTGAACCTGGCTGGAATGGCACCAAGTGCGACCAGATGTGCGCCCCTGGCTTCTTTGGGGAGAACTGTAAGGAAGTGTGCCCGCCCTGTAAAGACAACCATTTCTGCAACCGGATAGATGGAAAGTGTTCGCACTGCAACCCCGGCTGGATCGGAGATCGgtGTGAGACGAAATGTCATAATGGAACATATGGAGAGAACTGTGAAAATTATTGCAGTGATTGCTTTAATGGAAAATGCCATTTTGCCACTGGGGAATGTCTTTGTGATCCTGGCTTTTATGGTACCTTcTGTAATATGAGCTGCCCAGTTGGTCAGTATGGTGTTAACTGTGCACAGTCCTGCTCTTGCCATGACCTGAACTGCAATCCAGTCTCTGGTGCCTGCTTCTTGCAAACCAACCAGCGAATGGGTGTGATTGCTGCCGGAGCCCTGGTCACCTTCCTTCTCAtcctgctgctctctctgctgTTCTGCTGCTGCATCTGCCGGAAGAAAGACAACAACAACCCAGATCGTGAGAACTCGGTAAACAGTAAGAAAGCCAAAAGACGCCTGTGCGGAAGATTCAGCAGAATCAGTACGAAGCTTCCCAGGATACCACTAAGGCGCCAAAAACTGCCAAAAGTTGTTGTGGCCCATCATGACCCTGAGAACACATTCAACTGCAGCTTCATTGAGCCTCCTTCTGTGGTGGAGCAGCCATCTCCCTCCTGGTCCTCTCAGGGCTCTTTCTCCTCCTTTGAGACCAGTGACGATGGGCCTGTCTATTGTGTGCCCCATGAAGAATCTGTGtcagaaaacaaagacaaaggaAGCCCAAATGTAGTAGAGAAGCTGGCACCACCGATCAGTGAGGAGGAGGCTGGAGAATACACTTCTCTGAAGGATGCTGGTTCGGTCAAGCAGAGCCTAGGTGACAGCAGTGAAACACCTCTGTTGAAATCTTCTGACAGTGAAGGATCTACCAGCGGCTCTGAATCCACCATTGGGGCTCTCTATGCCAGAATCGCCAGGTTATCCAAACAGTCCAAAGACGAGGACGACAGTGGGAGCAATGAAATCAAGGGCAATGGCAAACCTCCTTCTCCAGAGAGGGCCAAGCCTCGTCCACCAGACCCTTCCACCAAGCCTAAAGTGTCCTGGATCCACGGAACCTCTGGATCTAACCAGACTCCTGAGAAAAACCTGGGATCGGGGACCAACAAGGAGAAGAACAAGAGCTCGAGCGAGATCTTGGGGAGAACTGACGAGAAGCCCAACGGCAGAGTTAAGGAGAAAGCCAACAGACACAGGGAGCAGAGCTCTCCTGAAACAAAAGGTACAGACAGGACGAATTCACCAAGCAAACACAGGTCCCACAAAGCCAGGCCTGGCCAGGAGCAAATGGAACACATCAACGGTGCCGTTCAGAATGCGCTAAAGAAGATCGGGAACTACCACAGTGACAAGAAAGGCGACCCTAAAGAGGTGCCAAAAAGCCCCAGCAAGTCACGCTGTGAAGTCATCCACCCTCACATGAATTCGGAAGCTGCCACATTGCTGGCAGCCCAGTTGAAGGAGAAGACTCAGAGCATAAAGAGTGAGAGCGTCGCCAAGCAGAACGGCCTGTCGACCCCGCAGGCGCACCGAGAGAAGCCCACCCCTCCGCAGAAGGCCAAACGCACAGCTGCTGGGGCCAACCAAAATTCCCAAAAGCCTCTGCTGCCAACTTCTAACAACTTACAAAAAATGGTGGCCCCGGTTTCAAAAACACTGTCTCCCGAGCCAAAAAGCCCTGAGAAACAGGACTCCAATACCTTCAGACAGGACACAGGGGACCCCACTCCAAAGAAGACACCCATCAAAAAGCCCCCGAGAAAGAAAGGTAAGGAAGGAACTCTGGACTCCGAATCTAAGTCTCTTCCGAAGACGGCGATAATGCCGCCTCAGATagtgaaatagattttttttttttactacaaagGGCTGTAAAACTGTCAAAGACCAAAGACAACTTTTAGGACAACTTTCCAAAGAAAAAACCGAAAGAAAAGTCAATACAACTCAGCCATTATGATTTAATACATCGGAAGTCAATATATTctacttttaaattatacagCATGGACTAAATGATATACAGAGCACTTCCTGTAGAACAAAGGATGAAATGTTGGCCTGCTATTTCCATGGACGTTGAAGTGGTGAAATACTGTGAAGGACTGTGGACCATTCAGTATCACCTGgacttttgttattgttgtttatggttatttttaaacttacagagttgttagtattttatattatcacAAGCAATATAAGATTTTGAAATCTTCTCTGAGGGCAATAAGAGAAAGCAGTGttggacatttgttttaaatcattttatagCCAAATACTGTACAAGTACAGTATTAACATGAATAATCTATGCAAATAAAGTGACCAAGATTTAGATTCTCAAAGGTATGGATAATGTAAGTTATATAATGTTAGTTaaatttttatgaaaaaaaaaaatggttccaGGTTTCACTTGTATTCATGACTTCTAAGAAAACTAGCAAGTTACTATTTTGAAaagttaacaaaatatattattaatgtacaaGAATGCAATCCTCCACaattccccccccaaaaaaaatatcCTTATACCAGTTAGTAAACAGTCCCCCTCTTCAATGTTACAGCACACAAGGTTACAGACATCTGTGGACTATCTAGAGACTGCATAAAAGAAATACCTTTCTTATGAGTCTTAAACTATACAAGTCTAGTTTGTAGCCTGTACATATTATCACAACACACCAATGTTCTCGTTGTTTTGAGTTTTGGGGATTTGGAATACTTTAAAGATTCACATTTTATTGGTAtcacagtatttattattaatttaacttttgcATTCCTCCAGAGGTaagacacagaaaacaaaatcacacgATGTTCAGTATTACAAGATTAAAAGCagaatgtgtgtttattgcaAAGCTACAACTGACAACTGCCTTTCAAGTGGTCTATCAAAAAAACAATGCCAGtgtgaaatgtatgtgtgtCCCAGCTTTCTTAGCGGTGTGCTGGACATCATTCAGATACATATATTTCTCGCTTACGGATAGCTGTACTTACCTGTTGCATGGTAACCTAAAGCTAGTGCAATGAAATGCTCTACGTTTTCAAACTGTTagtgtatattgtttttcctGGAAGTCTCTTTTCTTATGCTTAGACACAGGGTGAGTAGAGTTGCTACTGTTTCCGACTGTAGGCTATAACATTATATGCACAGTGTTTACTGAAGcatatgttaaaaacaaatgtgtgtctgtgacccTTCCCTATGTAGAACAATATCAAAGTTCCCCACCTGATTTCATTCAGTCACATTTGATTGACTGATTTTCTTGATAATTAGAATAATGTGGTTCTCGATTAGCCAGACATAACAATATGCTGGTTTCCATTGAAGAACAGAGAGATTACTCTTTCTTCCGAAGCTCTTTAGTACCTGGTGTATTAAAGTGAAAGCCAATCAGAAATCCCTTTCTTCTAGTTCTCAGGCTAATCTACCAAACAAACTGACTTTGGTTAGGATGGAAACATTTAGTGGTTTTTCCAGACTGAGGGGCCACTCATTTTAAGAACAGTAATATCCATTTGAATAAGATGGTTCTTTCCATAGACTGGATGTtgtcaaaatattaaatacaatgtattttaattatgtttgaaaGACTGGTTAGACCATAAGTGTGTCAGCATGGTACCTGTGATGAGTGTTAATTAAGAGGTATGTGCGCTAAAGTTTCTTGACTTTCAATTTCTTTGAATGCTAGATGAATCCAGATGTTTTCCTGTTGATTGTGGGGAGGTGTTtcgtattgttttgttttgttctgtttgtatgGTACAGCTGGTTTCTAAATTACaagctttcatatttttttacttgtaaaaatgtaatatgtgttATGGTATAATTGTACTTTTGCATAAGCAGTGCTTATTATTATGAACCATTTGCTacttcatgttattttattgttgtcaATGAACTGGCtttcatattgtatttgataACTTGCATTTTTTACTTGTACATTTCAGGCTCAAAGACAGTAACAGATGActtgctttattattgtttattgcaaTGACATTTCACTGGGAATTTCTTActcttgcatacatttttttctcttgcaattcatattttaatgaataacagaatttacacaaaacaacagctACTACATGGGAAAGAGATCTTGTCTGtaaaaattgttatttttctgttttcccaaTGAGTCTTTTCTTGGCTTCTTTCACACTCCAATATACCACTGAAATCATTCATTAATTACAGATATGATCAACTAAGCAACATAGTTactaaacacttttaaaattagCAGCTGTCTGGCTTACCTTCAGCAAGTAGGAAAAAATCTTTTTCTAGTCTGACTGGCCCACGCCTTGTTTTGAAACAGGGCACGCTACAGCAGGGCGTCAAAAtggttgttgtcattgttgttgttgttgttatatgttttgatttgttttcaatgtgatgttcttgtgtgtttgttttgttt

Function

GO: NA

KEGG:

id description
K24319 SCARF2; scavenger receptor class F member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018683 True 5669 mRNA 0.44 11 18001743 18021214

Neighbor

gene id symbol gene type direction distance location
AMCG00018682 NA coding downstream 15979 17984479 ~ 17985764 (-)
AMCG00018684 NA coding downstream 17834 17982629 ~ 17983909 (-)
AMCG00018680 NA coding downstream 23523 17973435 ~ 17978220 (-)
AMCG00018676 fbxo21 coding downstream 161607 17834395 ~ 17840136 (-)
AMCG00018674 NA coding downstream 169138 17823669 ~ 17832605 (-)
AMCG00018690 NA coding upstream 508208 18529422 ~ 18532311 (-)
AMCG00018689 LOC106585651 coding upstream 514311 18535525 ~ 18535910 (-)
AMCG00018688 NA coding upstream 536127 18557341 ~ 18562421 (-)
AMCG00018696 NA coding upstream 551928 18573142 ~ 18575337 (-)
AMCG00018695 NA coding upstream 556913 18578127 ~ 18586515 (-)
G117978 NA non-coding downstream 134758 17865067 ~ 17866985 (-)
G117933 NA non-coding downstream 240183 17760550 ~ 17761560 (-)
G117916 NA non-coding downstream 265419 17734676 ~ 17736324 (-)
G117888 NA non-coding downstream 416645 17584751 ~ 17585098 (-)
G117856 NA non-coding downstream 486623 17514857 ~ 17515120 (-)
G118008 NA non-coding upstream 278634 18299848 ~ 18300107 (-)
G118010 NA non-coding upstream 292785 18313999 ~ 18314242 (-)
G118101 NA non-coding upstream 631552 18652766 ~ 18659398 (-)
G118100 NA non-coding upstream 635251 18656465 ~ 18657534 (-)
G118115 srsf9,LOC107692023,LOC107560829,LOC105025588 non-coding upstream 711874 18733088 ~ 18733820 (-)
G117899 NA other downstream 397895 17603356 ~ 17603848 (-)
G117823 NA other downstream 745472 17226090 ~ 17256271 (-)
G117784 NA other downstream 992442 17008898 ~ 17009301 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 2483428 15498662 ~ 15518315 (-)
G117377 NA other downstream 3263431 14736138 ~ 14738312 (-)
G118075 NA other upstream 445154 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 517204 18538418 ~ 18547368 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other upstream 723920 18745134 ~ 18746820 (-)
AMCG00018715 ankrd13a other upstream 816540 18837754 ~ 18845144 (-)
AMCG00018723 NA other upstream 1017343 19038557 ~ 19047717 (-)

Expression


Co-expression Network