AMCG00018684


Basic Information

Item Value
gene id AMCG00018684
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17982629 ~ 17983909 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018684
ATGCCTGTATTTTACACCCCCATTCCTCAGAACCTGCGTCTGGGCCTAGCTCATGCCAGCGGGTCTCTATTCACGCACAACAGAACTCGGGACAGTAAAGATGGACAGAGATACACAGCAGAACATGAGATAGTGTCCCACCTACCTCTGCAGATGCTGCTGTatttcaatgtcttttttttccctttctggtGGGTTTCTGAAGTATGTATGCTGGAATTAAAGttcTCTCTCTTGCCTGGCTACTACCAGTGTCTGTTGGTGACAGGGGTCATCCTCCTCACAGTGCTCGAGTGTTCGCGTCTCTATCTTGGCTACGTAGGAAACCTGAAGGAGAGGGTGCCAGAGCTGGCCGGCTTTTGGCTCCTTACCTTCCTGTTCCAGCTCCCCATCGTGCTTTTCTTCCTGATGGACGAAGGGATCATCATCCTTCCGCTGGAGCGAGCCATCCACATCATCTACCTCCTCTTCATCCTCTCGGAGATCTTGGCTGCCTTCCTGGGACTCAAAGTCATGACTCGGAAACTGACCCTGCAATTTTACCTCCGACAGTTCAAAGGCAAGGAAAGCAACCCACAGCTGGATATCAACCAAATTCTAAATGTCCCTTACGGAAGAAGCATAACGCCAATCACCTTGACAAATAACAATCCCATCTAA

Function

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0036038 MKS complex cellular_component
GO:0060170 ciliary membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018684 True 660 mRNA 0.49 4 17982629 17983909

Neighbor

gene id symbol gene type direction distance location
AMCG00018680 NA coding downstream 4409 17973435 ~ 17978220 (-)
AMCG00018676 fbxo21 coding downstream 142493 17834395 ~ 17840136 (-)
AMCG00018674 NA coding downstream 150024 17823669 ~ 17832605 (-)
AMCG00018677 NA coding downstream 176704 17805656 ~ 17805925 (-)
AMCG00018675 c21h12orf49,clg12h12orf49,LOC104923683,LOC104949818,LOC103134957,LOC107087327 coding downstream 185057 17793565 ~ 17797572 (-)
AMCG00018682 NA coding upstream 570 17984479 ~ 17985764 (-)
AMCG00018683 NA coding upstream 17834 18001743 ~ 18021214 (-)
AMCG00018690 NA coding upstream 545513 18529422 ~ 18532311 (-)
AMCG00018689 LOC106585651 coding upstream 551616 18535525 ~ 18535910 (-)
AMCG00018688 NA coding upstream 573432 18557341 ~ 18562421 (-)
G117978 NA non-coding downstream 115644 17865067 ~ 17866985 (-)
G117933 NA non-coding downstream 221069 17760550 ~ 17761560 (-)
G117916 NA non-coding downstream 246305 17734676 ~ 17736324 (-)
G117888 NA non-coding downstream 397531 17584751 ~ 17585098 (-)
G117856 NA non-coding downstream 467509 17514857 ~ 17515120 (-)
G118008 NA non-coding upstream 315939 18299848 ~ 18300107 (-)
G118010 NA non-coding upstream 330090 18313999 ~ 18314242 (-)
G118101 NA non-coding upstream 668857 18652766 ~ 18659398 (-)
G118100 NA non-coding upstream 672556 18656465 ~ 18657534 (-)
G118115 srsf9,LOC107692023,LOC107560829,LOC105025588 non-coding upstream 749179 18733088 ~ 18733820 (-)
G117899 NA other downstream 378781 17603356 ~ 17603848 (-)
G117823 NA other downstream 726358 17226090 ~ 17256271 (-)
G117784 NA other downstream 973328 17008898 ~ 17009301 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 2464314 15498662 ~ 15518315 (-)
G117377 NA other downstream 3244317 14736138 ~ 14738312 (-)
G118075 NA other upstream 482459 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 554509 18538418 ~ 18547368 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other upstream 761225 18745134 ~ 18746820 (-)
AMCG00018715 ankrd13a other upstream 853845 18837754 ~ 18845144 (-)
AMCG00018723 NA other upstream 1054648 19038557 ~ 19047717 (-)

Expression


Co-expression Network