AMCG00018694


Basic Information

Item Value
gene id AMCG00018694
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18606248 ~ 18634128 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018694
GCAGAACTTGTATTAAGTGAATTTGTCCTAGGGACTTATCTGAAAAAGATATATCATACTACCACCCAAAACATCCACTCCTCTCTGTGGATTTAAAAGGCCACAGGAGGAATCAAACATATATTTGAACTCGTGCCTACTGCGCTTATTCGCTAATAGCATCTGTTTTATTAGTCCCCACTGCAGAGAGGAAGGGAGATGACCCACATCCCATTGCTTCTGTACATCCAAGGGGCTGGTGCTGCCTGGCAGTCACAAGGCAGATTCTGCAGCATTTCCCCCCCTGCAGTCCTTCAAGGTATAGAgcgtttctttttcttttttcttttttctttttaactgagCTTGCGATAAAGATAATCTCATGCATGTACTCCCTGGCTTGCACCACATCCCAGTCCCCTACTGTAAAGTCTGACTCTACTGCAAGaccagcaggcaggcaggcaggcaggcaaggGTCTGTAAGAGCTGAATGTGTCTTTAAGGTGCTTAAGTGGCGAGTCAGTCCTTTGGTATCTGGAGCTGAAGCTGACAGGAACGGAAAGGGCTGTTTTGGAGATTCTTGCTGTCTCTACATCCCGAGCAACTTCATCAATACTGCATGCAGCCAAACAGCTGGCAAGGGTCCCCGCTGCCATCCGGACACTGGTCCCCAGCGGGCAGCCGTGTGTTTGagtttgtattgctttttggagagagaagagggagtCTGAGAGTGCGGGCTGTTTTGTTGCAAGAAGAAGTGGACAAATAATAAGCCATTCTCGGGACAGGACACTGGACAGGCATTGTTGGTGGGAGGGGGAGACATCTTTACTAGCATGCCAACATCCTGCTGCAGGACAGTGTGAACACGGGGGAGCGTAACGGATCTTGATGCACCTGCTCCTAATTCGCTTGGGCTATGGAGTAAAGCTGATGTCTAAGATGGCTTGCCCAGACCTGCAGTTTTCCAGAAGAACCTGCAAGCACTGTGATTCCCCCGACAGCCTCTGGCCCGCTTGGATTGAGGTTAAGGTTGAAGTTGTGGTCCCTGCTAAGGAAAAGGAAACTGATAAAATGTCGCCCAACGGCAAGGTCAGTCCTCTACCGAACTGTCGGCCAAACGGGACAGCCAAACACTTCCACTACGAGGACAAGTCCATCACCCTCAGCCCCTACCAGAACCCCAGGGACTTTGTGGAGACAGCAGTGTGTCATGTCAAGGACCTGGAGAACGGACAGATGCGGGAGGTGGACATGGGCTGTGGGAAAGCGCTGCTGATAAAGGACAGTGGCGAGTTCTGTGCTATCGGACACAAGTGTCCGCACTATGGAGCGCCGCTGGTGAAAGGTGTGTTGTCAAAGGGCCGGGTGCGCTGCCCCTGGCATGGAGCCTGCTTCAGCACCGCCACTGGAGATATCGAGGACTTCCCCGGCCTGGACAGTTTGCCAAAGTTTCAGGTTAgagtggaaaaagaaaaggtgatcATTCGGGCAAGCAAACAGGCTCTCCAGTCACAAAAAAGGACAAGGCTCATGACAAAATGTACTGCGCTGAGTAACTACAATGCCGGCTTCAGCAACGTCCTCATCATTGGAGCAGGTCCTGCTGGACTGGTTTGCGCTGAGACGCTGAGGCAGGAAGGCTACTCAGACCGTATTGTAATGTGCACTACGGAGAAGAACCTGCCATACGATAGGCCTAAACTGAGTAAGTCTCTGGAGAGTACTTCTGAACAGCTCACCCTGCGGCCTATGGAGTTCTTCCAAAGGCATGATATAGAGCTGCTGAGAGAAAAGGAGGTAGTCGCAGTGGACATAAAGACAAAAACTGTCACATTTCGGGATGGATTGCAGTTGGAGTACAGGAAACTTCTCATTGCCACTGGCAGCAAAACTCCGGAAGATGCCAATCACATAGCAAAACTCGCCAGCAATAAGAATGCCGTCATAGTGGGAGCATCCTATGTTGGTATGGAGGTGGCTGCATACCTGGCTGAAAAGGCCCATTCTGTTTCAGTCATTGGACTGGAAGATGTCCCTTTTCGAAAAGCTTTGGGAGAGAAAGTTGGAAGATCAATAATGAAGATGTTTGAGAACAACAGGGTAAAGTTCTACATGCTGAATGAAGTTTCCGAACTGCGAGGCCATCTTGGAAAGTTAAAAGAAGTGGTTCTGAACAGTTCAGGACCTGCaacatcatttttaaaacacagtggCATTCACATGGATTCCAAAGGCTTCCTCACTGTGAACAAGTTGATGCAGACTAATGTACCTGGAGTCTTCGCTGGCGGAGATATCGTGACTTTCCCGCTGTCTCTCCGCAACAATAAAAAATTCAATGTGCCCCACTGGCAGATGGCACACATGCATGGCCGCATCGCTGCACTCAACATGCTGGACCGCATGGTTGAGATTAACACTGTGCCTTATTTCTGGACAGCCATGTTTGGGAAAAGCTTAAGATATGCAGGTCATGGAGAAGGATTTGATGATGTGATTATCCAAGGGGATTTAGATGACCTGAAGTTTGTAGCGTTCTACACTAAGAGTGAAGATGTAGTTGCCGTAGCAAGTATGAACTACGACCCCATTGTTTCCAAAGTCGCCGAAGTGTTTGGATCCGGGAAGACTATTAGGAAACGGGATGTGGAaaCGGGGGACATGTCTTGGTTAATAGGAAAGGGCACGCAGTAAAACATCTGAGCGCCTGACTACTGCTGAATATCACTGGGAAGGAATGGCAGCTAAACAGCTCTTTCAAAGTCTGTACCGACAACTCTTAATTCAAACCAAACCCACTGTACTCTGATACTGACAAATAATTGTAGTCCTCCCTGGCGTACATCTGGGGAGCTTTCACCAAGACAAATCTGCAGCAAAGCCTCTTTTCTATTTTCAGTGGAGGTGTCTTCTGTGACAGaactgtacatattgtataaaCTTGTGTAAATGAACCAAAACAAGTTTTTAAGTAGCTACTAACACTGTTAGTACCAATCTAGTGGATGAAtcttgtattttgcacttttaagACTAAACTAACAAGCAATACTGGATGCAGTCACTGTGCTTGTGCATGATTGACCTGTACACATTGTCTATAGGGGTGTATAGGGGTATTGTCCTTTTTTTGTACATGTATCTTTGTATATAGCTTTTACCTGTACTCTAATCATATAAAACTGTACAATTTCATTTTGAactagagagaaaaaaagtgttgcCTGGGTGTGTATAATATATCTTGAATGCAGATTGGGTAGCCTTTATTTAGGACTGGCTTGGTtcaaagatgtatttaaatctaaatttcATATTCTCCCCGAATGGATTTTGCCAATGGACTGTCAATTTGGTGTTGTCATCTTTAGAAGCCATAATGATACATTCCCTAAATTCATACTCGGAGCTGTGTTATGGAACTGGAAATGTAAATTTggaataatgcattttgtttctcaaaacCATGTAAATCTGACCTGATGTAGATTATAACTGATGATAGTTCTCACAAAGGCATTTGTCCTCTGATACCAGAGCATGATCACAAAGATAAAAGCCAATTTTTCTTGTATGCTAATACATTCTAGcatataactttaaaatgtttaacagaCCTGCTAGTTGAAtgcataaattatatatttttaaatgaatgcagtgCATAGCATAGAGTtggtttgcattaaaataaaaaaaataaaaaattaaggaaattttaatttagatataaTGCTCTAATTggtattaaaaacagattattttgtGATGTGGCTTCTTAAGAAAACTCTTTGTTACTAACTCAGGGAGCAGAAGTATGGGAGTCATTTTGGAATTGttcctgcaaaaataaatttgttgcttttattttcctacCAAAAA

Function

GO: NA

KEGG:

id description
K22747 AIFM3; apoptosis-inducing factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018694 True 3873 mRNA 0.44 20 18606248 18634128

Neighbor

gene id symbol gene type direction distance location
AMCG00018695 NA coding downstream 19733 18578127 ~ 18586515 (-)
AMCG00018696 NA coding downstream 30911 18573142 ~ 18575337 (-)
AMCG00018688 NA coding downstream 43827 18557341 ~ 18562421 (-)
AMCG00018689 LOC106585651 coding downstream 70338 18535525 ~ 18535910 (-)
AMCG00018690 NA coding downstream 73937 18529422 ~ 18532311 (-)
AMCG00018699 NA coding upstream 8371 18642499 ~ 18643149 (-)
AMCG00018704 NA coding upstream 27126 18661254 ~ 18663368 (-)
AMCG00018705 pes1,LOC106585655,LOC102794482,LOC101476782 coding upstream 40661 18674789 ~ 18683596 (-)
AMCG00018706 pole coding upstream 66804 18700932 ~ 18718832 (-)
AMCG00018709 NA coding upstream 89570 18723698 ~ 18725941 (-)
G118010 NA non-coding downstream 292006 18313999 ~ 18314242 (-)
G118008 NA non-coding downstream 306141 18299848 ~ 18300107 (-)
G117994 NA non-coding downstream 544704 17981829 ~ 18061544 (-)
G117978 NA non-coding downstream 739263 17865067 ~ 17866985 (-)
G117933 NA non-coding downstream 844688 17760550 ~ 17761560 (-)
G118101 NA non-coding upstream 18638 18652766 ~ 18659398 (-)
G118100 NA non-coding upstream 22337 18656465 ~ 18657534 (-)
G118115 srsf9,LOC107692023,LOC107560829,LOC105025588 non-coding upstream 98960 18733088 ~ 18733820 (-)
G118147 NA non-coding upstream 248931 18883059 ~ 18885984 (-)
G118223 NA non-coding upstream 544353 19178481 ~ 19178740 (-)
AMCG00018687 NA other downstream 58880 18538418 ~ 18547368 (-)
G118075 NA other downstream 132003 18466368 ~ 18474245 (-)
G117899 NA other downstream 1002400 17603356 ~ 17603848 (-)
G117823 NA other downstream 1349977 17226090 ~ 17256271 (-)
G117784 NA other downstream 1596947 17008898 ~ 17009301 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other upstream 111006 18745134 ~ 18746820 (-)
AMCG00018715 ankrd13a other upstream 203626 18837754 ~ 18845144 (-)
AMCG00018723 NA other upstream 404429 19038557 ~ 19047717 (-)
AMCG00018742 wscd2,LOC106584983,LOC105898177 other upstream 833640 19467768 ~ 19498979 (-)
G118434 NA other upstream 1353546 19987674 ~ 19988168 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030884 aifm3 coding NC_007116.7 CM002889.2 12637823 ~ 12701603 (-)
grasscarp (Ctenopharyngodon idella) CI01000071_04780189_04798898 AIFM3 coding CI01000071 null 4780189 ~ 4798898 (+)