AMCG00018708


Basic Information

Item Value
gene id AMCG00018708
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18729036 ~ 18729506 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018708
ATGCAGCTCAAAGTGAAGCTACTGGGGGGTGCTGAGCATGGCGTAGATGTGGAGCCCAGCGCCACGGTCACCCAGCTGAAGCAGAAAGTGCAACGGCTGTCTGGGGTACCTGAAGGTGCCCAGAATCTGGCAGTGATGAAAGATGGAGAAAAGGCTAAGCTGGAGAATGGCAAGAGGCTGTGCGACTATGGTCTGTCTGACGGTGCCACCGTTGTGATGTTCATTGCCGAATCTAAACCCACTGAGATCTTTCTGAAGAATCACAAGGGGCAGTTAAAGCCGTACTGCTTCAGCCCAGAAGAAACGGTGGCAGAGTTCCTTGGCAAGGTGTCCCGAGGGGAGGCCGTTGCTGCGGACCAGCAGTATCTCACCTACCAAAGCATCGCTCTTGACACAAACAGGAAAATGGGAGACTACGACATCGGGCATCACAGCACTGTGTACCAGAACCTGCGACTCCGGGGAGGTTGA

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018708 True 471 mRNA 0.55 1 18729036 18729506

Neighbor

gene id symbol gene type direction distance location
AMCG00018701 NA coding upstream 38797 18685139 ~ 18690239 (+)
AMCG00018692 lztr1,LOC107755835,LOC107704547,LOC107668721 coding upstream 69638 18646519 ~ 18659398 (+)
AMCG00018691 LOC103397299,LOC106580116,LOC107704964 coding upstream 123174 18590966 ~ 18605862 (+)
AMCG00018693 NA coding upstream 157697 18562533 ~ 18571339 (+)
AMCG00018697 NA coding upstream 200915 18527743 ~ 18528121 (+)
AMCG00018700 srsf9,LOC106568192,LOC107653776 coding downstream 3601 18733107 ~ 18734584 (+)
AMCG00018711 LOC106580268,LOC105014447,LOC106585675,LOC103353553 coding downstream 79870 18809376 ~ 18821287 (+)
AMCG00018710 git2 coding downstream 117070 18846576 ~ 18869867 (+)
AMCG00018716 gltp,gltpa,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968 coding downstream 147264 18876770 ~ 18885979 (+)
AMCG00018720 mmab coding downstream 318282 19047788 ~ 19050639 (+)
G118043 LOC104945943 non-coding upstream 52810 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 510937 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 748097 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1143924 17584751 ~ 17585112 (+)
G117813 NA non-coding upstream 1476013 17250869 ~ 17253023 (+)
G118285 NA non-coding downstream 726636 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 738317 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 750185 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 847458 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 1264620 19994126 ~ 19994329 (+)
AMCG00018702 NA other upstream 7693 18719206 ~ 18721343 (+)
AMCG00018681 NA other upstream 746019 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 1659366 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 3747331 14954564 ~ 14981705 (+)
G117383 NA other upstream 3940903 14786623 ~ 14788133 (+)
AMCG00018712 NA other downstream 98091 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 164829 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 493662 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 643966 19373472 ~ 19482092 (+)
AMCG00018762 NA other downstream 1241633 19971139 ~ 19974730 (+)

Expression


Co-expression Network