AMCG00018712


Basic Information

Item Value
gene id AMCG00018712
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18827597 ~ 18840095 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018712
ATGGTCAGAACGGAGAACCCGGGCTACACGACCGTCCATTTGAGCCCTGCTAGTGAGCGTGCTCAGTGTGCTCCTGGTAGTCATGATCGTGATAGCGGTGTGTGTGTACAAGCCTCTACGCCGCCGCTAGCCTCTCACCGGGACTGGCTTGAGGCCACACTGCCGTCTGCCCGGGACACTGGATCTCCAGACCAACCTCCTCGTCCTCAGGACCGCGTGTCCTCTCCCGGCGACGTCATGGACAGACGTAGTAATGACAAGACGTACCCTCGAGtgagtGAAAGCTGCAATATTcgctccagctcctcctcctcctcttttctTCGTCTctgctcttcctcctgctgCCGGGCCGACAGCTGCATGGCCAGCTTGAGGTCCGAGTCTGGGCTGGCTGCGGAGGCCGAGCTGGCGGGACCCACTGTGGCACCCAGGTCTACGAGGAGGCCTTCTGGCACGGCCCTAGAATCACAGCAACACGGGCAGACCCTGACCTGGCCTGATCCTCCGCTACTGGACTCCAGCAGGCTCTGGTGGATGGCGTACTGCAACAGATCTTCGTCGTGGTTCGGGACAGGGGTTGCTCTGGTGCTGCCCCGGTGA
>TU148025
GAGCCCCTCTACCTCCTCTCTGCGATACAGCTGATGTTTACAGCCATGGGTTTCGGTCactcttattttcttttatctttaatttctcttttctcaTTGTCCAATGGTCAGAACGGAGAACCCGGGCTACACGACCGTCCATTTGAGGTATTGAAACACCAGAATTTGGCCCTGCTAGTGAGCGTGCTCAGTGTGCTCCTGGTAGTCATGATCGTGATAGCGGTGTGTGTGTACAAGCCTCTACGCCGCCGCTAGCCTCTCACCGGGACTGGCTTGAGGCCACACTGCCGTCTGCCCGGGACACTGGATCTCCAGACCAACCTCCTCGTCCTCAGGACCGCGTGTCCTCTCCCGGCGACGTCATGGTGCCACACCTGCAATCTCTGTTCACCTGCTTGCTTATGCCTTTTGAGGCCCCATTTCTCTCCCATCCCTCAAAAGGAGTCACAGATTCACTCCCTCCCCACCCTCGTTCCATACTCCCGAGTCTGTCAACATGTACCTGTACGTATTAAACTACTGCGGCCAAATCCTGGAGTGAGAGAACGGCCATTCTTAAGCACCTCTCTCGATATTTGTGATGCACTTGGAGGATGCATTCCTTACAGAATATGACATTGCACTGATTGTGTGGTtcctgtatgtttgtttttttcttttaattttgatttctttgTCTTATAAGCatcttgtaaaaaaaagaaaccgcCAAATAACCTTAAGTCAAGTAGCTTCCTTATTggaaacaaattacacacactACCATAAGTAAGTATCCTGATGGGTAATAAACATTCCAGAAAAGAGTGGACTGGAGCCTCACGTTCCTCTCTGTGACTCATGCTTGCGCGGTTATTAGTGAGGGTAATGGAGATAGTATTGGATTGCTGGTCATCCAGGGGAAAGGCCCATTTTCTGACAACTGGACTGTATTTAAGGAAAGGttttggggcggggggggtgtaGAGCTGGCCTCTGACTactagtattttgtttttgttttacttttcccCCTGCCCATTGTTGTATAGTTTAGTTATGCACTGGACTGTAATTGACTTATAGCACAATCTTgtgtaataattatttaatgggGACCTTCAGTTCTAGAGAATGTTGACGTGTTGGTTTCATCTTAAGTTGTATGTAACAGCTGCTGCTTTATTTATGACACTGACCTGCACTTTCGTTTTTGGTTAAAAtatgatttctatatttttgtatgtcttatttattaacatttaaggtttttgtttaatcatacTTATTTATTGTAACGTTGATTTTTCAATCAttagtatttaatgtttttgtttcttcacacTTTCATCATTGTGTAGAAATCTGGAATAAAACCTCTCAATGCTGGCTGGA

Function

GO: NA

KEGG:

id description
ko04911 Insulin secretion

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018712 False 603 mRNA 0.62 5 18827700 18840095
TU148025 True 1374 lncRNA 0.43 2 18827597 18832243

Neighbor

gene id symbol gene type direction distance location
AMCG00018711 LOC106580268,LOC105014447,LOC106585675,LOC103353553 coding upstream 6310 18809376 ~ 18821287 (+)
AMCG00018700 srsf9,LOC106568192,LOC107653776 coding upstream 93013 18733107 ~ 18734584 (+)
AMCG00018708 NA coding upstream 98091 18729036 ~ 18729506 (+)
AMCG00018701 NA coding upstream 137358 18685139 ~ 18690239 (+)
AMCG00018692 lztr1,LOC107755835,LOC107704547,LOC107668721 coding upstream 168199 18646519 ~ 18659398 (+)
AMCG00018710 git2 coding downstream 6481 18846576 ~ 18869867 (+)
AMCG00018716 gltp,gltpa,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968 coding downstream 36675 18876770 ~ 18885979 (+)
AMCG00018720 mmab coding downstream 207693 19047788 ~ 19050639 (+)
AMCG00018719 kctd10,LOC105014907 coding downstream 233009 19073104 ~ 19078777 (+)
AMCG00018725 NA coding downstream 268281 19108376 ~ 19116265 (+)
G118013 NA non-coding upstream 96785 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding upstream 151371 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 609498 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 846658 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1242485 17584751 ~ 17585112 (+)
G118285 NA non-coding downstream 616047 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 627728 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 639596 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 736869 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 1154031 19994126 ~ 19994329 (+)
AMCG00018702 NA other upstream 106254 18719206 ~ 18721343 (+)
AMCG00018681 NA other upstream 844580 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 1757927 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 3845892 14954564 ~ 14981705 (+)
G117383 NA other upstream 4039464 14786623 ~ 14788133 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 54240 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 383073 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 533377 19373472 ~ 19482092 (+)
AMCG00018762 NA other downstream 1131044 19971139 ~ 19974730 (+)
G118557 NA other downstream 1419282 20259377 ~ 20260940 (+)

Expression


Co-expression Network