AMCG00018717 (trpv4,LOC106585668)


Basic Information

Item Value
gene id AMCG00018717
gene name trpv4,LOC106585668
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18894335 ~ 18908956 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018717
GTCCACCTCCACGATTTTGGGCTTCTATCGCATGGCTGAGCCAGAAGAGCCCCCCTCCGTGTCCAGCGGTGGCTCAGGGGACAGTGGAGACAGCCAACAGGATGAGTCTTTCCCTTTGTCCTCACTGGCCAACCTGTTTGAGGGCGAGGAGAGCTCCCCAGCGCCGGAGCCAGCGCCCCCCCGGTCTGGCGAGAGCCGCCCAAACCTGCGTATGAAGTTCCAGGGCGCCTTCAAGAAGGGCATCTCCAACCCCATGGACCTGCTGGAGTCTACCATCTACGAGTCAACGGTGGTTCCAGCACCCAAGAAAGCGCCCATGGACTCCCTGTTCGACTACGGCACCTACCATCAACCCAGCAACCAGAAACGCCGTAGGAAAAAGATTAACACCGGAAGCTCTGTCACACTGCCTTCTGATTTCTCTCCCTGTATTTCTGAACCTAACTTTCAACCGCAGTCTTTCTTCCTCGACATGAGTTTAGATGTTGTCCCCCACCACAGTCAAACCCAGTCCAGGCGTTTACTCCAGTGTCCTTACCTGTCCCCGTCCCCATCCCTGTGTTTGCGCAGTAGTGTGAAGGGccctgcccccgcccccccgcctGTGCTCAAGGTGTTCAACCGCGCGATGCTCTTCGACGCCGTCTCCCGGGCCGACAGCGAGGCTTTACAAGGGCTGCTACCCTTCCTGCTGGGACAGAAGAAGAGGCTGACGGACGAGGAGTTCAGAGagcCTTCGACAGGGAAAACATGCCTCCCCAAAGCTCTGCTCAACCTCTACAATGGCTGCAATGACTGCATCCCGCTGCTGGTGGATATCGCTGAGAGGACGGGCAACCTGCGGGAGTTTATCAACACGCCCTTCAGAGACGTCTACTACCGGGGGCAGACCGCTCTGCACATCGCCATCGAGCGGCGCTGTAAGCAGTATGTGGAGCTGCTGGTGGAGAAGGGAGCGGATGTCCACGCTCAGGCCAGGGGGCGCTTCTTTCAGCCCAAGGACGAGGGCGGTTACTTCTACTTCGGCGAGCTCCCGCTGTCCTTGGCCGCCTGCACTAACCAGCCAGACATGGTGCACTACTTGACCGAGAACGCCACTAAGAAGGCGGATCTGAGGAGACAGGACTCCCGAGGCAACACCGTGCTCCACGCATTGGTGCACATCGCCGACAACACCCGGGACAACACCCGCTTCGTAACCAAGATGTTCGACCTGCTGCTCATCAAGAGTGCCAAGCTCTACCCCGACTGCAGCCTGGAGACGGTGCTCAACAACGACAGCATGTCACCCCTCATGATGGCCGCCAAGCTTGGCAAGATTGGGGTGTTCCAGCATATCATTCGTAGGGAGATCAAAGATGAGAGCGCCCGCCACCTGTCTCGCAAGTTCAAGGACTGGGCCTACGGTCCTGTCTACTCCTCCCTGTACGATCTCTCCTCTCTGGACACCTGTGGGGAGGAGGTATCTGTGCTGGAGATCCTTGTGTACAACAGCCGAATCGAGAATCGCTACGAGATGCTGGCCGTGGAGCCGATCAACGAGCTGCTCAGGGACAAGTGGCGGAAGTTCGGTGCCGTCACGTTCTACATCAGCGTGGTGTCCTATCTGGTGGCCATGGTGATCTTCACCCTCGTTGCCTACTACCGGCCTTCTGAGGGCACACAACGTGAGTCCACacccacacgcacactcacacatggGGCTAAACTCCATTGCTCCATCAAGATCAAGGACCTCTTCCTGAAGAAATGCCCTGGGGTGAACTCCTTGTTTGTGGATGGCTCCTTTCAACTGCTCTACTTCATCTACTCGGTGCTGGTGCTGGTCTCAGCCGCCCTCTACCTCTCAGGGATCAAGGCCTATGTGTCGGTGATGGTGTTTGCCCTGGTACTGGGCTGGATGAACACTCTCTACTTCACCAGAGGCCTCAAACTCACTGGAACATACAGCATCATGATCCAGaagATTCTCTTCAAGGACCTGTTCCGGTTCCTGCTGGTCTACGTGCTCTTCATGATTGGATACGCTTCTGCCCTGGTGTCTCTCCTGAACGCATGTCCAAGTCCAGACGCAGAGTGTCCAGGAGGCAATTGTCCCACCTACCCCCAGTGTCGGGACACGGGCACCTTCAGCACCTTTCTGCTGGACCTGTTCAAGCTCACCATCGGCATGGGCGACCTGGACATGATCAACAGCGCCCAGTACCCGGCCGTCTTCCTCATCCTGCTGGTCACCTACATCATCCTCACCTTTGTCCTGCTCCTCAACATGTTGATCGCTCTGATGGGGGAGACTGTGGGACAGGTGTCCAAGGAGAGCAAGAAGATCTGGAAGCTGCAGTGGGCGACCACCATCCTGGACATCGAGCGCTCCTTCCCAGTGTGTCTCCGCCGGTCGTTCCGCTCGGGGGAGATGGTCACAGTGGGCAAGAACTGTGACGGGACGCCTGACCGGAGGTGGTGTTTCAGGGTGGATGAAGTGAACTGGTCTACCTGGAATCAGAACCTGGGAATCATCAACGAGGATCCGGGCAAAAACGAGACCTACCAGTACTACGGCATCTCGCAGACTGTCAGGGGGCTGAGGAGAGATCGCTGGTCCACAGTTGTCCCCAGGGTGGtggagcaaaataaaaacccGCGGTCTGGGGAGGCAGTGGTGGAAATGGAGCAGTTTGAGCCCCTCAATCCTGGACACAAGTACATCGCCGAGAGACACAACTGACACTGAGACAAAGAGCCACACACTCTCGCTACCAGGGCCCGGCCCGAACTGGAGTGGGTGAGATGGAGCGGAGAGGTGACGCGtgcaccctctctctctcttccattgCACAGACCAGGTTTTGCGAGTTTGCACAGACGTCTGCTGTAGTGCCTATTATTTGTCTACCACGTATGAGGGCGTGTTTACCAAAGATGCTTCCTATGAGGAAGATTAGGCAAACATCTCATAGTTAAAAACGGTTTTATTTTAACCACAGGACATTGATTTTAGAAGGAACTGGTTTTgtactgctttaaaatgtattttttgaaatCAAAGCCAAggtcaaatgtatatattgtttaattttgttacaaAGTATCACTCAGGGATTTTAAGAAGCAGGAAATGTATGACAATCATTGCCAGTCTACCGCTGAAATTAAATCCTATTTTTAAGTTTGTACTGACAAATCCTATAGATCTTTAACACTGTGTATCGGACAGGCTAAatttttctatttatgtttAGTAGTCAGGGAGTGATTTTGAAGTAATTTGTGGCCCCtgtacattttctattattatttaaactttttaggTTCTGTATAATATCGATTTTAACCTTTCACAGCTCAGATATGGCTTATAAACCTAGGATAACTGAATAACCTTAAAATCAAGATGATTTAATGCTGTACTATTAGACATACCATGCAATTCAGGATAGAGCAGTACAGTTGCATCACAATAATCCTACACTAGGTGCCAGTGTAGCACACATTATAGGGAACCTGAAGGAAAACTGATTTCTgatttcttcagaaacatgcaGTGCCAGATTTTCACGTGAACGTTTTGAAAATTCAAGGCAATGAGCAAATCGTAGTCTCTGTCTGCAAAATGTGGTAATTaactgaaaaatacagaaaaggaaCAATTTGCAGTGAACTGCAGTAGAATTGAAGGGGAATAAATGGTCCCAgtgcattaattaaatgttaaatgaacTGGAGTGTTTGACATGACCGCACTATATAACATGGGTGTGATATATGAATGAACAGTGTGCGCATGCAGTTCATATcattgcttctgtttttaaaatacaaacttatTGTACTACGaagaaagatgtattttaatcatgtaattcctgtaattatttatagcttgtttgttattttctagATCTAGAGACCTGCTTTAAGAGAATACCTCCGTGAAGGccacaaatgttttaataccATATTTAAACTTATTATGCATGTTTCCTGTTACCTTGATGCTTTTCTTCTCCCATGCTAACACTTGAAGCTAGGCCAAACTATCTATTTTTCCCTAAACAAATCTGACTCTGGTGCCATCATCTACTTTAATATTTAGTTCTaccaaaacaatatacaatactatCTGgtaatacagtgtgtgtgtgtgtgtgtgtatatatatatacacacacacaccagtctTTGACCAATGATAAATAACTACATTCGTCTTGTATATTTATGGAACCTTTTTTTGGATGGGTCATGCTTTTCATTTAGTGgcagtttttgtttagtttctgtttCCCACAAAGCTAACATCAAGAGGTAAAGGCACATTTCAAGTTAGACACTACTTCTGTAATTATCCAATTCAGTGCAACTATCATGTGAAtatctttttcctttctttttatttttatacctgGCAGCATTTTTTGCAACAGCTGAAGACAAATCAGGTCTGTACAGATAttgattacatatttaatagACATTACAAGCCCCCTCGTGTCCACTGACTGGGTGGAAATCCGTGTGGGTTATGGTAGGAGAGTTctagaatgttttttaatgtggaaTGACTTTGAATAGGAGAGCTTGGTTAACATATTCACTtttcaaaatagattttaaaaagtagtttttttttttttaaccttgtataaatatttttttattagacagcattttcactttccttttcttgtgTATTAATGTCACTGTTGGACATTTTGAGGAATctcttttaaatgcttttttgtgCCAAAATTAAAGCACCtatgaagtttttatttatacattttttaagcc
>TU148059
CCTCACCCCAGGGTGGATGAAGTGAACTGGTCTACCTGGAATCAGAACCTGGGAATCATCAACGAGGATCCGGGCAAAAACGAGACCTACCAGTACTACGGCATCTCGCAGACTGTCAGGGGGCTGAGGAGAGATCGCTGGTCCACAGTTGTCCCCAGGGTGGtggagcaaaataaaaacccGCGGTCTGGGGAGGCAGTGGTGGAAATGGAGCAGTTTGAGCCCCTCAATCCTGGACACAAGTACATCGCCGAGAGACACAACTGACACTGAGACAAAGAGCCACACACTCTCGCTACCAGGGCCCGGCCCGAACTGGAGTGGGTGAGATGGAGCGGAGAGGTGACGCGtgcaccctctctctctcttccattgCACAGACCAGGTTTTGCGAGTTTGCACAGACGTCTGCTGTAGTGCCTATTATTTGTCTACCACGTATGAGGGCGTGTTTACCAAAGATGCTTCCTATGAGGAAGATTAGGCAAACATCTCATAGTTAAAAACGGTTTTATTTTAACCACAGGACATTGATTTTAGAAGGAACTGGTTTTgtactgctttaaaatgtattttttgaaatCAAAGCCAAggtcaaatgtatatattgtttaattttgttacaaAGTATCACTCAGGGATTTTAAGAAGCAGGAAATGTATGACAATCATTGCCAGTCTACCGCTGAAATTAAATCCTATTTTTAAGTTTGTACTGACAAATCCTATAGATCTTTAACACTGTGTATCGGACAGGCTAAatttttctatttatgtttAGTAGTCAGGGAGTGATTTTGAAGTAATTTGTGGCCCCtgtacattttctattattatttaaactttttaggTTCTGTATAATATCGATTTTAACCTTTCACAGCTCAGATATGGCTTATAAACCTAGGATAACTGAATAACCTTAAAATCAAGATGATTTAATGCTGTACTATTAGACATACCATGCAATTCAGGATAGAGCAGTACAGTTGCATCACAATAATCCTACACTAGGTGCCAGTGTAGCACACATTATAGGGAACCTGAAGGAAAACTGATTTCTgatttcttcagaaacatgcaGTGCCAGATTTTCACGTGAACGTTTTGAAAATTCAAGGCAATGAGCAAATCGTAGTCTCTGTCTGCAAAATGTGGTAATTaactgaaaaatacagaaaaggaaCAATTTGCAGTGAACTGCAGTAGAATTGAAGGGGAATAAATGGTCCCAgtgcattaattaaatgttaaatgaacTGGAGTGTTTGACATGACCGCACTATATAACATGGGTGTGATATATGAATGAACAGTGTGCGCATGCAGTTCATATcattgcttctgtttttaaaatacaaacttatTGTACTACGaagaaagatgtattttaatcatgtaattcctgtaattatttatagcttgtttgttattttctagATCTAGAGACCTGCTTTAAGAGAATACCTCCGTGAAGGccacaaatgttttaataccATATTTAAACTTATTATGCATGTTTCCTGTTACCTTGATGCTTTTCTTCTCCCATGCTAACACTTGAAGCTAGGCCAAACTATCTATTTTTCCCTAAACAAATCTGACTCTGGTGCCATCATCTACTTTAATATTTAGTTCTaccaaaacaatatacaatactatCTGgtaatacagtgtgtgtgtgtgtgtgtgtatatatatatacacacacacaccagtctTTGACCAATGATAAATAACTACATTCGTCTTGTATATTTATGGAACCTTTTTTTGGATGGGTCATGCTTTTCATTTAGTGgcagtttttgtttagtttctgtttCCCACAAAGCTAACATCAAGAGGTAAAGGCACATTTCAAGTTAGACACTACTTCTGTAATTATCCAATTCAGTGCAACTATCATGTGAAtatctttttcctttctttttatttttatacctgGCAGCATTTTTTGCAACAGCTGAAGACAAATCAGGTCTGTACAGATAttgattacatatttaatagACATTACAAGCCCCCTCGTGTCCACTGACTGGGTGGAAATCCGTGTGGGTTATGGTAGGAGAGTTctagaatgttttttaatgtggaaTGACTTTGAATAGGAGAGCTTGGTTAACATATTCACTtttcaaaatagattttaaaaagtagtttttttttttttaaccttgtataaatatttttttattagacagcattttcactttccttttcttgtgTATTAATGTCACTGTTGGACATTTTGAGGAATctcttttaaatgcttttttgtgCCAAAATTAAAGCACCtatgaagtttttatttatacattttttaagcctttgaaataaaagtatttaaaactg

Function

symbol description
trpv4 Predicted to enable calcium channel activity. Acts upstream of or within atrioventricular valve development; cellular response to oscillatory fluid shear stress; and response to osmotic stress. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cilium. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; head; heart; pectoral fin; and sensory system. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2C; motor neuron disease (multiple); osteochondrodysplasia (multiple); and osteonecrosis. Orthologous to human TRPV4 (transient receptor potential cation channel subfamily V member 4).

NR:

description
PREDICTED: transient receptor potential cation channel subfamily V member 4

GO: NA

KEGG:

id description
K04973 TRPV4; transient receptor potential cation channel subfamily V member 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018717 True 4791 mRNA 0.48 15 18894335 18908931
TU148059 False 2358 lncRNA 0.37 2 18906406 18908956

Neighbor

gene id symbol gene type direction distance location
AMCG00018716 gltp,gltpa,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968 coding upstream 8356 18876770 ~ 18885979 (+)
AMCG00018710 git2 coding upstream 24468 18846576 ~ 18869867 (+)
AMCG00018711 LOC106580268,LOC105014447,LOC106585675,LOC103353553 coding upstream 73048 18809376 ~ 18821287 (+)
AMCG00018700 srsf9,LOC106568192,LOC107653776 coding upstream 159751 18733107 ~ 18734584 (+)
AMCG00018708 NA coding upstream 164829 18729036 ~ 18729506 (+)
AMCG00018720 mmab coding downstream 138832 19047788 ~ 19050639 (+)
AMCG00018719 kctd10,LOC105014907 coding downstream 164148 19073104 ~ 19078777 (+)
AMCG00018725 NA coding downstream 199420 19108376 ~ 19116265 (+)
AMCG00018724 NA coding downstream 244502 19153458 ~ 19154597 (+)
AMCG00018730 svop,svopa,LOC107696058 coding downstream 256930 19165886 ~ 19181728 (+)
G118013 NA non-coding upstream 163523 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding upstream 218109 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 676236 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 913396 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1309223 17584751 ~ 17585112 (+)
G118285 NA non-coding downstream 547186 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 558867 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 570735 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 668008 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 1085170 19994126 ~ 19994329 (+)
AMCG00018712 NA other upstream 54240 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 172992 18719206 ~ 18721343 (+)
AMCG00018681 NA other upstream 911318 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 1824665 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 3912630 14954564 ~ 14981705 (+)
AMCG00018732 NA other downstream 314212 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 464516 19373472 ~ 19482092 (+)
AMCG00018762 NA other downstream 1062183 19971139 ~ 19974730 (+)
G118557 NA other downstream 1350421 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 1463263 20372219 ~ 20374812 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030956 trpv4 coding NC_007116.7 CM002889.2 19795977 ~ 19833310 (-)