AMCG00018720 (mmab)


Basic Information

Item Value
gene id AMCG00018720
gene name mmab
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19047788 ~ 19050639 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018720
GCGGAAGGTCAAAATGCTTCTTTAAAACAGTGTagtgtgttttcttatttaacaaaatgtcgTCATTCATTGTAAACAAGCTCCCTCTCGGTCGTGTTCTCAGCACATCGGGGAAGTATTTCGGCATATCGTGGACACGGGcattgtgtgagagtgtgaagGAGGGAGGGTGAGATGCGTTTAGTGTAACACGACAAAGTGGCTGATTGATACATTATTACCGATCACATCCTTAACTGTTTCCTCTGTGTTGCAGTTCTAGACCATCTGGCAAATGTGGACGAGTCGACCATGTTCCTAAGATTTACACGAAAACGGGCGATAAAGGGTTTTCCAGTACTTTCACGGGGGAGAGGAGACCGAAGGAGGACCAGGTGTTTGATGCTCTGGGAACAACAGACGAGCTGTCTTCAGCCATTGGTTTGGCCCGGGAGTTCTGCTTGGATCAGGGCCATTCTTTCATCGAGGAGCTTGACATGATCCAGTGTGTGTTGCAAGATGTGGGGTCAAACATCGCCACCCCCTTGTCATCAGCCAGAGACAGCCACATAAAAAGGACGAGCTTTGGTGCCGAGCCAGTCTCTGAGCTGGAGCGCTGGATTGATGCGTACACAGAGGAACTGCCAGCCCTGACCAGTTTCATCCTGCCTTCGGGTGGGAAGAGCAGTGCTACCCTCCACCTGGCGAGAGCGGTGTGTCGCAGAGCAGAGCGCAGTGTGGCCAGTATTGTAAGAGCAGGTGAAGCAGATGCCAACGTGGCAAAATACCTGAACAGGCTCAGTGACTACCTGTTCACCTTGGCCAGGTATGTTGCCATGAAGGAGGGGAACCAGGAGAGGATTTACAGGAGACCGACAGAGAAGTGAGAGGAGCACCCCCCGAAGAAAAAGAAACCAGTGctggtttttcatttttcatcagGTTGCTTTTGTTCTTGAACCTGCAGTATAGCAGGATGTGATAGGAGCCCCTGCTGCTGAGAAGAGAATGGCAGGAATGACATTACTTATacaagatgttaaaaaaaaaaatcatgtgaTTGTATTTGCTGACATTGCATCTGAACTGTAGATGTAGATTACTTCTGTAAACCCCATGCAATGCTACTGAAAGCAAACCAAACTCCGTTAAAGtatctgcattattttattggtgtattattttatacatttttcaaaagttCATTATAAAGATTAACAAAAAgtcaaaatacaaatctatacaaaacacataaacagactaataaatacattgactaTCGCAAGACTGAACACTTGACAAAGCACAGCGAACAACCACCACAGGCCACAGCCAGGTAAAACGgacagaaattaaacattttagacCTCAGG

Function

symbol description
mmab Predicted to enable cob(I)yrinic acid a,c-diamide adenosyltransferase activity. Human ortholog(s) of this gene implicated in inherited metabolic disorder and methylmalonic acidemia cblB type. Orthologous to human MMAB (metabolism of cobalamin associated B).

NR:

description
PREDICTED: cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial

GO: NA

KEGG:

id description
K00798 MMAB, pduO; cob(I)alamin adenosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018720 True 1352 mRNA 0.46 8 19047788 19050639

Neighbor

gene id symbol gene type direction distance location
AMCG00018716 gltp,gltpa,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968 coding upstream 161809 18876770 ~ 18885979 (+)
AMCG00018710 git2 coding upstream 177921 18846576 ~ 18869867 (+)
AMCG00018711 LOC106580268,LOC105014447,LOC106585675,LOC103353553 coding upstream 226501 18809376 ~ 18821287 (+)
AMCG00018700 srsf9,LOC106568192,LOC107653776 coding upstream 313204 18733107 ~ 18734584 (+)
AMCG00018708 NA coding upstream 318282 18729036 ~ 18729506 (+)
AMCG00018719 kctd10,LOC105014907 coding downstream 22465 19073104 ~ 19078777 (+)
AMCG00018725 NA coding downstream 57737 19108376 ~ 19116265 (+)
AMCG00018724 NA coding downstream 102819 19153458 ~ 19154597 (+)
AMCG00018730 svop,svopa,LOC107696058 coding downstream 115247 19165886 ~ 19181728 (+)
AMCG00018731 ssh1,LOC106584991,LOC102780175 coding downstream 155416 19206055 ~ 19222946 (+)
G118013 NA non-coding upstream 316976 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding upstream 371562 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 829689 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 1066849 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1462676 17584751 ~ 17585112 (+)
G118285 NA non-coding downstream 405503 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 417184 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 429052 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 526325 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 943487 19994126 ~ 19994329 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 138832 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 207693 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 326445 18719206 ~ 18721343 (+)
AMCG00018681 NA other upstream 1064771 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 1978118 17068212 ~ 17069670 (+)
AMCG00018732 NA other downstream 172529 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 322833 19373472 ~ 19482092 (+)
AMCG00018762 NA other downstream 920500 19971139 ~ 19974730 (+)
G118557 NA other downstream 1208738 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 1321580 20372219 ~ 20374812 (+)

Expression


Co-expression Network