AMCG00018724


Basic Information

Item Value
gene id AMCG00018724
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19153458 ~ 19154597 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018724
ATGGATAAGTTTGTGACCAGAACCAAGAAACGGACACTGGGATCCTCAGGTCGGCCAGAAAAAGATGTGGGAGAAAAAGCTCATCAAGAAGAGGGGGGTCTTCAGAAAAGGAGTAAAGTGCTCcgagatgaggaggaggagagggaggaaagCTGTCCCAGTGCGGACGAGTTCTCGGACCCTCTGCCCTGGCAGAAGAGAGAGGCTGAGGGTCTGGATCTTGATTACACAGTTCTCTTCCCCAGAACACAAGCAGACAGGCTATTTAAACAGTTGGAGGAAGAAGTGGAATATTTTTCAGGTGAGAGAGCCAAGGTGCAGGTTTTTGGGAAGTTCTACAATGTTCCAAGGAAGCAGGCAACTTATGGGGACCCTGGGCTCTTGTACTCCTTCTCTGGTGTCCATCTCTCAGCTAAGCCTTGGACGGCCGTATTGGAGCAGATCCGAGATGCTGTTACTAAGGCCACCGGGCACATCTTCAACTTTGTCCTCGTGAACAGGTATAAAGATGGGCAGGACCACATCAGGGAGCACCGGGATGATGAGCGGGAGCTGGACCCCACCTGCCCCATCGCCTCCGTGTCGCTGGGGGCGGCGCGTGACTTCGTGTTCCGGCACCGGGAGTCTCGGGGCAGCCGGCCGAGCCGCCGCATCCCCCCCGTGAAGCTGGAGCTGCAGCATGGGAGCCTGCTGCTCATGAACCCTCCCACCAACACCTACTGGTACCACAGCCTGCCCACCCGCAAGAGGGTGCTCGCCCCCCGGGTCAACCTCACCTTCCGACGCATTGTGAAGACATGTGTCGGCTGA

Function

GO:

id name namespace
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K10859 ALKBH2; DNA oxidative demethylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018724 True 810 mRNA 0.57 3 19153458 19154597

Neighbor

gene id symbol gene type direction distance location
AMCG00018725 NA coding upstream 37193 19108376 ~ 19116265 (+)
AMCG00018719 kctd10,LOC105014907 coding upstream 74681 19073104 ~ 19078777 (+)
AMCG00018720 mmab coding upstream 102819 19047788 ~ 19050639 (+)
AMCG00018716 gltp,gltpa,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968 coding upstream 267479 18876770 ~ 18885979 (+)
AMCG00018710 git2 coding upstream 283591 18846576 ~ 18869867 (+)
AMCG00018730 svop,svopa,LOC107696058 coding downstream 11289 19165886 ~ 19181728 (+)
AMCG00018731 ssh1,LOC106584991,LOC102780175 coding downstream 51458 19206055 ~ 19222946 (+)
AMCG00018737 coro1c,LOC106584990 coding downstream 120312 19274909 ~ 19282966 (+)
AMCG00018734 NA coding downstream 134592 19289189 ~ 19296001 (+)
AMCG00018735 NA coding downstream 145351 19299948 ~ 19306740 (+)
G118013 NA non-coding upstream 422646 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding upstream 477232 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 935359 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 1172519 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1568346 17584751 ~ 17585112 (+)
G118285 NA non-coding downstream 301545 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 313226 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 325094 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 422367 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 839529 19994126 ~ 19994329 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 244502 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 313363 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 432115 18719206 ~ 18721343 (+)
AMCG00018681 NA other upstream 1170441 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 2083788 17068212 ~ 17069670 (+)
AMCG00018732 NA other downstream 68571 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 218875 19373472 ~ 19482092 (+)
AMCG00018762 NA other downstream 816542 19971139 ~ 19974730 (+)
G118557 NA other downstream 1104780 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 1217622 20372219 ~ 20374812 (+)

Expression


Co-expression Network