AMCG00018725


Basic Information

Item Value
gene id AMCG00018725
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19108376 ~ 19116265 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018725
ATGATAGAAAGTGGAATTACGTCCAGAATGTCAGGAATTCTTGGAAATTCAGGACAAAGTCATCACCCTTCTGCACAGGATTATAGATTACTGACCACAGACCCCTCCCAGCTGAACGAGGATGACCTCCCCAGTGACCTGCAGTCCCTGTCCTGGCTGACCTCAGTGGACGTACCCCGTCTGCAGCAGATGGCCACAGGCCGCCTTGACTTCAACATCAACTCCCAGGGTGCTTTGCTGGAGCAGCAGACCGcccAGATGAACAACATTAATGTGACTGGAGGACAGGGGACCATGATTCACCTTCAGAGCAACATGCAGAACAGCATTCTGGGAATGAACGCCATGACACCACACAGTGGCAATATGACCCAGTACTCCCTCAGTGGGCAGCCCTCTCCAGGCTTCCAGTCGCCCCCATCTGTCTACCAGCCCCCACCTCAGCAGGTCTTCACCATTGCCCAGACTGGCCAGCAGTGCTCTCCTGCCGGCCTCTATAGCAACACATCCTACAACCACAGCCCCTTCAGCCAGCCTCGCCTCGCCCCTCACACCAACCAGGACCTGCAGCCCAAATCCTACCCCAAGCCCATCTACTCATACAGCTGTCTGATCGCGATGGCTCTGAAGAACAGCAAGACCGGCAGCCTCCCAGTCAGCGAAATCTACAGTTTTATGAAGGAGCACTTTCCCTATTTCAAGATTGACAAgatggaggaggagatgcaAAAGTGGAAACGCAAGGACCTCCCTGCCATACGCCGCAGCATGGCCAACCCAGGCAAGACCACAGAGCTCTCCTaTGAGCTAGACAAGCTGATCACAGACCGCCCGGAGAGCTGCAGACGGAAGGCGTGTGACGCGGGGGTGACCCGGCTGCCCACCACCCAGGGAGGCCTGACGCTGCCCCCCCACCTGCAGCCCCAGCCCGTGATGACGCTGTCCCTGCAGTCCTTGCACCATCACCAGATCCAGGCTCAGGCCCGTCTCGCCCCCGGATCGCCTGCCCCGGCCCAGACGCCTCCTCTCCACACGGTGCCCGACCTCTCCCACAGCCCCCTCGGCCCCCAGCCCAGCAAGCCCCCGCACAACTTCTACAGCCTGCACGGCGACATGAGCACCGAGGTGGACTCGCTGGACCCCAGCATCATGGACTTCGCTCTACAAGGGAATCTGTGGGAAGAGATGAAGGACGAAAGTTTCAACCTGGAGACACTGGGTGCCTTCAGCAACTCCCCTCTGCGGCTCTCCGACTGCGAGTTGGTGACCCCCGGCCTGACGCCCGTGTCCAGCGCCAGCGACCTGTCCTTCTCCGACCTGCAGGTCACTGGCTTGTACACCACCTACACCACCCTGGACACCGTCTCCTCCCAGTACATGAGCACGCAGGGCAGCAACAAGCCCATCGCCCTGCTCTAA

Function

GO: NA

KEGG:

id description
K09407 FOXN; forkhead box protein N

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018725 True 1419 mRNA 0.59 9 19108376 19116265

Neighbor

gene id symbol gene type direction distance location
AMCG00018719 kctd10,LOC105014907 coding upstream 29599 19073104 ~ 19078777 (+)
AMCG00018720 mmab coding upstream 57737 19047788 ~ 19050639 (+)
AMCG00018716 gltp,gltpa,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968 coding upstream 222397 18876770 ~ 18885979 (+)
AMCG00018710 git2 coding upstream 238509 18846576 ~ 18869867 (+)
AMCG00018711 LOC106580268,LOC105014447,LOC106585675,LOC103353553 coding upstream 287089 18809376 ~ 18821287 (+)
AMCG00018724 NA coding downstream 37193 19153458 ~ 19154597 (+)
AMCG00018730 svop,svopa,LOC107696058 coding downstream 49621 19165886 ~ 19181728 (+)
AMCG00018731 ssh1,LOC106584991,LOC102780175 coding downstream 89790 19206055 ~ 19222946 (+)
AMCG00018737 coro1c,LOC106584990 coding downstream 158644 19274909 ~ 19282966 (+)
AMCG00018734 NA coding downstream 172924 19289189 ~ 19296001 (+)
G118013 NA non-coding upstream 377564 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding upstream 432150 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 890277 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 1127437 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1523264 17584751 ~ 17585112 (+)
G118285 NA non-coding downstream 339877 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 351558 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 363426 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 460699 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 877861 19994126 ~ 19994329 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 199420 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 268281 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 387033 18719206 ~ 18721343 (+)
AMCG00018681 NA other upstream 1125359 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 2038706 17068212 ~ 17069670 (+)
AMCG00018732 NA other downstream 106903 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 257207 19373472 ~ 19482092 (+)
AMCG00018762 NA other downstream 854874 19971139 ~ 19974730 (+)
G118557 NA other downstream 1143112 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 1255954 20372219 ~ 20374812 (+)

Expression


Co-expression Network