AMCG00018730 (svop,svopa,LOC107696058)


Basic Information

Item Value
gene id AMCG00018730
gene name svop,svopa,LOC107696058
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19165886 ~ 19181728 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018730
ATGGATGATGACCTGTTCCAGCTGAGACAGCTCCCTGTGGTGAAATTCCGTCGCACTGGCGAGAGCGCGCGCTCCGAGGATAACGATGGCTGTGGAGAGCACGAGGTTCAAATCGAGGGCGTGCGGGCAGCATTAGAGTCCGTGGAGCTGGGCGATGGCGCGGCCGTTCCCAGGGAGTTCGCCAACCCTACCGACGATACGTTCATGGTGGAGGATGCGGTGGAAGCGATTGGCTTTGGAAAATTCCAGTGGAAACTCTCCGTTCTCACTGGACTGTCATGGATGGCAGATGCTATGGAGATGATGATTCTGAGTATTCTGGCCCCACAGCTGCACTGCGAATGGAGGTTGCCCAGTTGGCAGGTTGCCTTTCTCACCTCGGTGGTGTTTATTGGGATGATGATCAGCTCTTCTCTTTGGGGAAACATATCTGACAAGTACGGGAGAAAAACAGGCCTGAAGATGAGTGTGATGTGGACGATGTACTACGGCATTCTGAGTGCGTTTGCCCCTGTCTATGGCTGGATCATCTTTCTCCGGGCGTTGGTGGGCTTCGGAATCGGAGGGGCGCCCCAATCGGTGACACTGTACGCAGAATTCCTGCCGATGAAATCCAGAGCCACTTGCATTTTATTGATAGAGATATTCTGGGCACTGGGCACCGTGTTCGAGGTCCTCCTGGCTATCATGGTGATGCCCACGCTAGGCTGGCGCTGGCTGCTGGGCTTCTCCACTGTGCCCCTGGCCATTTTcgctgtgctgtgctttTGGCTGCCGGAGAGCGCACGGTACGACGTGCTTACGGGGAACCAGGACAAAGCGCTGGCCACACTCAAACGCATCGCCGTGGAGAACGGGGTGCCCATGCCACTGGGCAAACTGATTGCCGCCAGACAGGAGGACCGTGGGAAGATACAGGATCTTTTCTCCCCGCAGTTCCGCTGGACCACTTTGCTGCTGTGGTTCATCTGgtTCTCGAATGCATTCTCATACTATGGTTTGGTCTTGCTGACCACAGAGCTATTTCAAGCTGGAGATGCGTGTGGGGTCTCCAAGGGCCAGAGGATGGAGCCCAGGTGTAGTATGGAGTGTAAATACCTGACATCTGATGACTACAAGGACCTGCTGTGGACCACTTTATCAGAGTTCCCAGGCTTGATAGTGACTCTGTGGGTCATCGATCGGATCGGGCGCAAGAAAACCATGGGTCTCTGCTTCCTCATCTTCTCCCTCTGCATCCTGCCATTGTTCGCCTGCGTCGGGAGGACAGCCCTTACAGTCTTCATTTTCATCGCAAGGGCCTTCATCGCTGGGGGATTCCAGGCAGCTTATGTTTATACCCCTGAGGTGTACCCCACAGCTACCCGGGCACTGGGTTTAGGGACCAGCAGTGGGATGGCCAGGGTTGGCGCTCTTATCACCCCCTTCATCGCGCAGGTGATGCTGGAGTCCTCGGTGTACCTGACGCTGTCGGtatactgctgctgctgcatccTGGCTGCCATCGCCTCGTTTGCCCTCCCCATCGAGACCACCGGCCGGGGCCTGCAGGAGTCCAGCCACCGCCAGTGGGGCCAGGAGATGATGGGCAGGAACTCTACCAGCTCCGGGGGCATCCCTCAGTCGAGCTCGGGCTCCCAGGACTAACAAGGGGTACAGCACTGGACAGGACTGGGGCTCAGAGAGGGCATTACCTCCCCGCCACCACCTCCGCAACTGCCTCCCTGGAGTATCACCTGGTCTGTATCTTGACACCATGGGAGGGAGCCTGTCTGcgtgcctgcctgcctgtgcaatgtgtttatttccgTATTTGGTTTTTGAATTTGTCATCCACCACTGCTGCTGTAATGACCTTGCCGATGCGAGTTCTATCGCGACATTTACTGGCAAAACAGAGTTCTGTGTCCTCCCAGGCCTCGGTGCCACAGGGGGAAAATTGCCCTGTTGAGAGAAGGGTTACGTGTATACACCCGAGGGGCAGTAAAGTAGTAAAGACTAATTTGTCACTGCATACACATCTCCCTATTCTCTAGCCACTGTGTATTCAGAGGCCTCTGTGAAAGAAGGCTGTTATGGGACATTCAGAGGGTAATGTGTTATCAGATAACTGATTCTAGGAACAAACATTGCAATCTACTTCTCATTATCAAACGTGGGAGAGATcgaaaaatcatatattttatgaaaacagCCGGCAGTTGCTCGGGGAAATCCTGTACTTCACTAAATAACGTTAAACAACCTAAAAACAAAGAATTTGGGAATAAATGTGTTCACTCTTTTGGTGTTATACCATTCCACTTTCTACCTGAAGAAGACGCCAAAATTGTTACCTAATTGGATATTcataaagaacaacaacaaaaacagaaggcgggcattacttttacttttgaacAAATCCTGTATTCATTCTCAATTAAATTACAGTGTTTGAAGACACCTTGAGGTCTCACCATCCTTTTAATCACAATAGAAGGCTTCATCAGCAGGCCATGAGACCACTGTAATAGTCACAGATGGCCTCTATACCATTGTAAAGACTTGGCTGTATTAAGATTAAATAGAAACGTTACCCATATAGGTGATTTGATTTTCTATATTAGACtagttaaacaaaaatgtcatgCCTGATTGTATCTGGGcaaaaaacatgctttgaaaCAGGAAaactgtatgtactgtacatgcTTACAAGAATATCTCAACAAAGTAGGCATATTTATACAGGTCTCTAGTCAATCTTATTGCAGTGAACAAGCACGCAGAACTCTAGATGTTTTAGGTCAATACTGGCACTCTTCATGCCTATTAAGGTTACATGTCCTGCCCTCTTGAACACAGATTTCAAGCTCAAGGTAGAAGGCACACATGCTGTATTGTAGATGGgaataattacttttcattgtGGGACAAACGTgagttgttttttagttttttttttctttgtccatGCTGTTTTTTGAAAAAGGGTTTTGTCCCCTTTGCAAGTAATGAGTCAAAACAAGGTGTTCTGGAAATTCCTGCACTTCTTGTCATGAAAACTGTCTAATACATGCCTGCCTTTGCAATTTATTGCTGCATTAAGTGTCTGTACACAGATTCTTGCCACTGCactgtatgtaaatgtgtatgATACAATGAATTAtgttataaaaaagaaaaagagcatCA

Function

symbol description
svopa Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SVOP (SV2 related protein).
svop Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in synaptic vesicle.

NR:

description
PREDICTED: synaptic vesicle 2-related protein-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018730 True 3177 mRNA 0.49 16 19165886 19181728

Neighbor

gene id symbol gene type direction distance location
AMCG00018724 NA coding upstream 11289 19153458 ~ 19154597 (+)
AMCG00018725 NA coding upstream 49621 19108376 ~ 19116265 (+)
AMCG00018719 kctd10,LOC105014907 coding upstream 87109 19073104 ~ 19078777 (+)
AMCG00018720 mmab coding upstream 115247 19047788 ~ 19050639 (+)
AMCG00018716 gltp,gltpa,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968 coding upstream 279907 18876770 ~ 18885979 (+)
AMCG00018731 ssh1,LOC106584991,LOC102780175 coding downstream 24327 19206055 ~ 19222946 (+)
AMCG00018737 coro1c,LOC106584990 coding downstream 93181 19274909 ~ 19282966 (+)
AMCG00018734 NA coding downstream 107461 19289189 ~ 19296001 (+)
AMCG00018735 NA coding downstream 118220 19299948 ~ 19306740 (+)
AMCG00018739 NA coding downstream 144751 19326479 ~ 19327879 (+)
G118013 NA non-coding upstream 435074 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding upstream 489660 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 947787 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 1184947 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1580774 17584751 ~ 17585112 (+)
G118285 NA non-coding downstream 274414 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 286095 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 297963 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 395236 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 812398 19994126 ~ 19994329 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 256930 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 325791 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 444543 18719206 ~ 18721343 (+)
AMCG00018681 NA other upstream 1182869 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 2096216 17068212 ~ 17069670 (+)
AMCG00018732 NA other downstream 41440 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 191744 19373472 ~ 19482092 (+)
AMCG00018762 NA other downstream 789411 19971139 ~ 19974730 (+)
G118557 NA other downstream 1077649 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 1190491 20372219 ~ 20374812 (+)

Expression


Co-expression Network