AMCG00018731 (ssh1,LOC106584991,LOC102780175)


Basic Information

Item Value
gene id AMCG00018731
gene name ssh1,LOC106584991,LOC102780175
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19206055 ~ 19222946 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018731
CCTCAGCATCTCATTTCCTTCACTGTACACCGAGTCCTTGGAGCTATCTAGTCCTTGGGTCAGCCTCCGAGCAAGGTTAcacagagatgagagagagacagatgggtGTATGTGCACGGAATTCAGAGCTCCACTCTCGGGCTCTGTGAAaccgcctttttttttttttctttgctcttttctcgtctctctcttttttaaaattgtacacttctgcatttgcttattttctgtCTCGGTTCTAGTCAGCTTTGTTATTCTTAACCGTGCTCTGGGACAGCAGTTGCGAGTCTTAAAAGGAAAGATAAGGTGATATCCTTTAGTGAGCACTAGACAGAGCCGCTGACAGGGTAATAAGATTTCAGCTACAGGAGTATCGTGGTGCCAGCTCCTGAAGAGGGCAGGTTAGCTCTCCCTGCCTCCAGCATCGCATCTGAGTGATTACTGGCAACGTTGCTTTAGTCCGTGACTCATGCGGTGACATGCATGTCAAAAAGCTCCTGCGAAAATTAAAGCGTTAAAGGAATTGGATCCGGAGAAGGGCTGGATTTCTGcctcaagtgtttttttttttttcttctatgtgCGTTAGAGTGGATGCTGCAGGTtggaacaaacaaaccaaactaaaatatattttgtctgtgGAAATTAGACTTCTGGAAAGTGTTTCTTCAGAGAGAGGCTGACAGGGGTGAGAGATTTTCCTTCGGAGAAGTGggtgcttttgtttctttcaaactGAAACTGAGTCGGAAGTCTCTAAGCTTGTACGGTTAGGATTTATTGAGACAGGTCTCCAGGGATAAAAGTTGAGATGCTTGGTTAAGTACTATGGGATAACCATGTCTTCATTTAAAAGCTTACTTGCTTTTGAACAGCCTTAGcctttttttcaaatgaagtgCGCTTTGGaacatttgtaatttgctaAGGGCATCATTTATTGAGACACCGCAGATTGCTAAATTTCAATCAGCTTGCTGAGATCAGTTGTACCCCTAGGCCATTCACAGTGAGCACTGCAGGCTCCTTGTGCACTCACTGCAAAGGGGATATTTGACACAactaacacaacacaacaacgagACTAGCTACTGTCATCTTGTTCAGAGCAAGCTGGTGCTCCCCTACACCTGGGGTTTGAAAACCCCTTTTCTTCTGTGGTTTATAAAGAAAGATTGGCcgggaaaaaaaacaggatgcaTCTGGTAGTGGAATCCTCACAAGAAGCCGTGCTCAAGATGCTGCCCTATTTTGTGGAGAATGCTGTCCTGACTCAGAAAGAGATCTGCCGAATCCTGAGTGAGAGCTTCTTCATGGTGAAGGGAGCGGCTCTCTTTCTGCAGCAGGGAAGCAGTCCACAGTGTCAGAAGGTGCACCCCCATCACAAAAATGCAGGTGATTTACCTCAGCACCTTCAGGTGATGATAAACCTTCTTCGTTCAGAGGACAGAATTAAACTGGCTGTGCGTTTAGAAAGCGTGTGGTCAGACCGGGTGCGGTACATGGTGGTGGTTTACACCAGCGGCCGTCAGGACACTGAAGAGAACATCCTACTGGGCATGGACTTCATCAACAAAGACAGTAAAAGCTGCTCCATTGGCATGGTGTTGCCATTGTGGAGCGATACCAAGATTCATCTGGATGGAGATGGAGGCTTCAGTGTGAATACAGCAGGAAGGACTCGTATCTTCAAGCCGGTCTCTGTCCAAGCCATGTGGTCGGCTCTACAGATCCTGCACAAGGCCTGTGAGGTGTCCCGCAGGTACAACTACTTCCCAGGAGGAATGGCTCTGACCTGGATGGGCTACTATGAGAGCTGCATCGCATCTGACCAGAGCTCTATCAACGAGTGGAACGCCATGCAGGACCTGGAGACTACACGGCCGGACTCCCCCGCCATGTTTGTTGATAAGCCCACAGAGAGGGAGCGAACAGAGTGCCTTATTAAAACCAAACTCAGGAGCATAATGATGTTCCAAGATCTGGAGAATGTGACCTCCAAGGAGATCCGTAGCGAGCTGGAGCAGCACATGAACCGCAACCTGAGGGAGTACAAGGAGTTCATCGACAACGAGATGCTGCTCATCCTCGGACAGATGGACAAGGCCACGCTCATTTTCGACCACCTCTACCTGGGCTCTGAGTGGAATGCCTCCAACCTAGAAGAACTGCAGGATTCAGGTGTTGGTTACATCTTAAACGTCACGAGGGAAATCGATAATTTTTTCCCGGGCATGTTTTCCTATCACAATATACGGGTTTATGATGAAGAAGCCACAGACCTACTGGCGCACTGGAATGACACCTACAACTTCATAGTAAAAGCTAAGAAAAACCACTCTAAGTGTCTGGTACACTGCAAGATGGGTGTCAGCCGGTCTGCGTCGACAGTCATCGCCTATGCAATGAAGGAGTATGACTGGTCTCTAGAGAAAGCATACAACTACGTCAAACAGAAGAGGAGCATCACTCGCCCCAACGCCGGCTTCATGAGGCAACTGGCGGAGTACGAGGGGATCTTAGACGCAAGCAAACAGCGGCACAATAAGCTGTGGCGTCCCGACTCCGACTGCGACCTCCCCGATGGCCAGCAGGCATCGGCCCAGTGCTGCAGCGCGGACGAGCCTGGAGACCTCACCCCCGAGCTCGGCATCCCTGCGTCCGACGAGGCCTGGGGCGGGGATGAGGCCAGACCCTCGCCCTGCCGGACCATCGGGGTGGAGGTGGACCCCGCCGACCCGCCCAATTACAACTACTACTTTCGGAGGCTGTCGGACTCGGCTCTGGACAGCGACCCTTGCACCCCGGTGCGGGCCCCCCCCTTGCTGGACATGGAGCGCGTCTTCATTGAGATCGAGGATGTGGAGCGGGACGCCCTGCTGGACGATGAAGGCTTCGAGGCCAGGGAGTGCCCCCTGCCCCCATTCAGTTTACCCGGGGAGGGCACTGCTGCCCAGACCTGCTGCCGCCTGGACCCCCTAGAGGCGGACATGCGTATGAAGCTGGAGTTCGGCAcggtggaggaggaggatgaggaggaggaagaggaggagcaggaggaagcGGAGATGGTGTCGTTGACGAGACCAGGagggggtggaggaggaggaggaggagggggtggcgacggcggcggcggcggcggcggcggaggGAGTGAGGCCATGCtggaagaagagaaagaagacAGTGGGCCGGCCTCTTGCTCCGCCTCCTTGGCCAATCGGAACAGGTTCAACAACGAGaatgccaacaacaacaacagcctcGGCAGCAGCAAAAGGAGCTGTCCACCTGGCTTTGACGACAGTGCTAACACCAGAAACACCTATAAAATCAAGCCTCCATACCAGCCCTGTACAGACTGCATGCTTTCCCAGCGCTGTGAACCCATGGTTGTGGAGCGCGCCCATCGCCTTAACCCTCTGCATATGTGTAGCATCCCGAACATCTGCGTACAGAACTCCGGCTCCGTGTCAGCTGATCATGCCTCCATTTCTAGTGTTTCGCCCTTGCCTGGGCTGCGTAGGGCCTCCTGTAGTCACTGCTCACCCAGCAACCGTGCCAACTGTGGTGTGTCGCCATCAGCAACATTGATAGAGGCCTATCGACATCGCCAGGTTTCACCCATGAACTGCGATGAGCTTCCCAGAGACCCACACAGACACTTAGAGGCTGATTCCATGAGCGAGTTGTCTGAGGCGGAGCACAAGAAGGCTGCTGTCAAAGCAGCCAAAGACCTGAGTCTGCTCAAGCTCAGTCTGGAGGCAGAGAAGCCCATGGTGCCCAGTTATGTGATGCAGCATCAGGAGTCCATCATGCAGCTCCAGAAGGCAGGGCTGGTCCGCAAGCACACCAAGGAGCTGGAGAAGCTGTCGAGCCTTTCCCTGGACCTCAGCAAGGCAGGCAGCCAGCTCCCAGAGCAAATGGACACGTGCTCCGAGGAGATAGACGGCATGGGGCTGGAGGAGGAAATGGAGGTGGACTCCACTTCTGTGACGGAGACATACCTCAAGACCTCCACGCCGTGCGGTAGCCGCCTTGATGTGGCCGAACCCCTGACCAACGACCTCCTGAAGACCGTGGGTGGACTGACGCCCACTTCCTCGCCGCACGGCTCCACGCTGACGCGCAGCTCCAGCAGCGACAGTCTGCACAGTGTGAGGGGGAAGCCAGGGCTGGTGAAGCAGCGCGCCCAGGAGATTGAGACCAGGCTCCGTCTGGCCGGACTGACCGTGTCTTCCAAGCTGAAGAGATCCAACTCCCTGGCCAAGCTCGGCAGCCTCACCTTCTCCTCGGAAGACCTGTCGTCGGCCTGCTCCTCTTCGGAAGCCAACACCATCTTGTTCTCCACGTCTGCTGAAGTCAGTAACGGCGAGGGCTGGCTGATGTCAGGCTCCCACACGATCAAAGGCAGCCTGAGTCATGGCAGCTGGGCGAAACcactgttagggaacatttctGGTTTTCCTCCTCAGAGCTGA

Function

symbol description
ssh1 Enables actin binding activity and phosphoprotein phosphatase activity. Involved in actin cytoskeleton organization; cell morphogenesis; and protein dephosphorylation. Acts upstream of or within cellular response to ATP and regulation of cellular protein metabolic process. Located in cytoplasm and plasma membrane.

NR:

description
PREDICTED: protein phosphatase Slingshot homolog 1 isoform X3

GO: NA

KEGG:

id description
K05766 SSH; protein phosphatase slingshot

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018731 True 4490 mRNA 0.53 15 19206055 19222946

Neighbor

gene id symbol gene type direction distance location
AMCG00018730 svop,svopa,LOC107696058 coding upstream 24327 19165886 ~ 19181728 (+)
AMCG00018724 NA coding upstream 51458 19153458 ~ 19154597 (+)
AMCG00018725 NA coding upstream 89790 19108376 ~ 19116265 (+)
AMCG00018719 kctd10,LOC105014907 coding upstream 127278 19073104 ~ 19078777 (+)
AMCG00018720 mmab coding upstream 155416 19047788 ~ 19050639 (+)
AMCG00018737 coro1c,LOC106584990 coding downstream 51963 19274909 ~ 19282966 (+)
AMCG00018734 NA coding downstream 66243 19289189 ~ 19296001 (+)
AMCG00018735 NA coding downstream 77002 19299948 ~ 19306740 (+)
AMCG00018739 NA coding downstream 103533 19326479 ~ 19327879 (+)
AMCG00018736 sart3 coding downstream 109544 19332490 ~ 19345758 (+)
G118013 NA non-coding upstream 475243 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding upstream 529829 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 987956 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 1225116 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1620943 17584751 ~ 17585112 (+)
G118285 NA non-coding downstream 233196 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 244877 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 256745 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 354018 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 771180 19994126 ~ 19994329 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 297099 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 365960 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 484712 18719206 ~ 18721343 (+)
AMCG00018681 NA other upstream 1223038 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 2136385 17068212 ~ 17069670 (+)
AMCG00018732 NA other downstream 222 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 150526 19373472 ~ 19482092 (+)
AMCG00018762 NA other downstream 748193 19971139 ~ 19974730 (+)
G118557 NA other downstream 1036431 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 1149273 20372219 ~ 20374812 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031173 ssh1b coding NC_007116.7 CM002889.2 31914906 ~ 31928913 (-)
grasscarp (Ctenopharyngodon idella) CI01000339_06770289_06776849 SSH1B, SSH1 coding CI01000339 null 6770085 ~ 6776849 (-)