AMCG00018732


Basic Information

Item Value
gene id AMCG00018732
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19223168 ~ 19234351 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018732
ATGGAGCTCTATGAATGTGCGCAAGTGAACCTCATCAGGAAAACGATTTCGCCACCCTCCGTAGGCCCGCCGTGTCACCCCACAGAGCTGCGGCCTAATTCGGTGGTGTGTGCTTTTGCTTTGCCAATGACTTGTGATCAAGCTATCGCGATCAGAGAAAGCACAGATCTCAACAAAAGGGACTCTATAGTCCACAGACTGCGATCGGCTCGCCGCTGCATCCACGCCAACCGAGCAGACTGGGGCCGCCCGTTAGGACCTGGAGCCCAGAGGAGTATAGGGACCTGGCACCACTCTAAAATACATTTCGCCAGCACTTAA
>TU148164
taattttaaaagtaaagaaagaaaaagcttttaatgAAAACTGTTATGAAGGGGATGGTTTTGTTTAAGGCTTctcctttctgttttgttttcctcaagtGGTACTCGATAGTTTATGACTTAGTGTTTGATGTAATGATTAGACTGCATTTAATATCTGTTATTTGTAGTATTCAATAAGGCTTTCACCCTTGGCCATGTGGAGGAGACAAATAATGATCTTTATCAGCAGCAGAGTAATTAACCATGCATCTATAAAATCCTTTTCACTCTCATGACGTTCACAGGGAAGATTTCGCAGTGTAGTACGATTTATGATTTTATTCCTAAGGGAGGCTGTTGGTCAGGTTTGAACACAACAGTTGGTCTTCAGCACAAAAACTGACACAAGCTTTTGAGTTGTGTATGCAGACGTCACAATGAAGCAGGCAAGACCAGACAGCACAAAATGGGGTACGTACCTGTATCTCCTGTATTGGAAACTTTCTAGATATGTAAATCGCATTGTATTCAGTGCAGAAGGCGATCAGCTGCCCAGGTCCCCCATTAACATTGTGCTCTTCATGCTCAGATATAAATAACGCCCGGGAATAATGTGAAGTCCATCCAAGCCATAGACCTGCAGCCATTTTgcttttccttctctttgttAGCCACTTCCATTATATATTGGGCAGAGCTCTCATGCAGAACTCCAGAGCTGTTCTCCATTTCAGATCATACAGCCGTTCAAGctaaaaaagacacacacacacacacacacataaacttAATCCTAAAAACCTCCCTGATCATTTTCAGTAATTAATAAATTCCAGGACCATTCAATCTCTTGTTTAAAGAGGTTTTACTTGTATTGTTTCCTGGGTGCAAAACTAGAATAAAGTAGTCAGGCCTGATTGGTTACAACAAGAGTTCAGGACCGGGGTTAGTGAGAATACATTTGCTGTGTTCAAGCATCGACACCCACAGCTtagggcagtggttctcaaacctgtcctggagtaccacctaccctgctggtttttgttccaaccaagctctcaattacttaatttaacccttgattgaagtaatttgattaaatttgactctttaaattgtgtaactgataaaaagttggttccttaatattttccttaaacaatttcatacttaacttaaaactcctactgttaaaaataattaaaaggctgtAATTAGGAAAttgtttgttcaattaagggttcaattaagtcattgagagcttggttggaacaaaaaccggcagggtaggtggtactcaaggacaggtttgagaaacACTAGCTTAGGGGGATAAAGCTGCGTTCTTTATCTAAACGGCCTCGGTGGCAGTAGCTGCTGAAGTGGCATCAGAGGAGATGTTTATCTACTAATTCGGCAAATCCAGCTGCACAAAGACCCATTCAtattccaaacacacacatatccaTTTTAAAGTGTAACCACTCTGTCATGACAGTACGTTTCTAAAGATCAAATCCTAAAAGGTAAAGAACAGCAGCAGTTTATTATTTCTGTCACACACTGGATCACTCAAGGGTTCAGGGGAACCAGGGGTTGATTTAAAGCAACGCGAGTGTCATCTCTTCAGAGACGGCTGGACAGTTAACGATCGTCTGTGTTTAGACTGGGGAggattattttgctgtatgGGTCGGGTGTGCTCTCGGATCAGAGGTACGATGCCTATATTTGCATGCTTATAAGTATTCAGAAAGGAATTTGAATCTCCCTCTATTCATTCAACCCTGGTGTGTTATGCCCTCATCAGTACACACAGCCTGCATTCCCTCTGAAATTCAGTCTTGTGCCCTGGTTGGCTTGTTTGGTACTGAACTGTCACCTGGAGTAACTCTGAGAATGTAAGATTGGTCGGCTAGGATGATGACATTGGAGTTGTCTCTCCACACGCGTGTTCTTGTCGGTTCATTATCGCATTTACAGTGTCGGCTCACTTCTGGCAGATGGTTAAACTCACAACAGCACAAACTCGCTTCAGACACCTGATGAAAACCAAACGTCTCTCTTTCCCGGAGTCTCGAGCGCAGAATGTTTTACCTAGAGTCAGAGCGTGTGAACTTTACTTCGGAAAGACTTTCAGATGTATCGAGCAAGGAGTGCATCGGACCTGTGCCCTCTCGGTTTCCCGAACCTGCTGATTTGAAACTCATTTGTTTTGCCTGTGAGGTGACGGGCTTCGCCATCCTTGAAGAGTCTGTGATGTGACAGTCCACATACTACGCTATACAGACAGTCCTATTCTTTCATGTCATTCCAGATGTGTAGATTTTTCAAGTCAcccaatgtttttatttatttatttatttattacttttgtatttattctgtttatcGGCACATAATATGCAAGTCTGTTCATAGGAATTTTGTATGGAACCTAATGCTATTCTGCCATTtacttttgatttagatttttttgtaccATACACTATGCAGTTAAATCAGTGTATTACAAGTGTGTAAGttctatatgtgtgtgcatgcgagTGTAACACAGACGTTACATGGTtactgtgaaatatttatataaaaaataataactaagaACTGCGTGGAAATTAACGAATGATTTGGAGcaatgaagactctgtatacATGCGTGTATACATTCCCTACCTGTATACATGTGACACTGCAGAGGTCTGGTCTCTAAGAGAAGTGGTATCAGGATGATGTAATATGTGCAGTGAGTTCAGGTTGCACTCCTGATTGGTTTGGACACTTTTTGTCAAGCAGCTATTTGCTCAATTTTAatatatgattgtgtgtgtggaataatatatattattcctacatacgcatatatatatatatattgtatactggCATACACATACAGAATGCATGTATGTGagtttatctatatatatatcaaaacaaaTCTATGGTCAGAGTGGTGCTGTAGTGGTTATCATCTTGAGTTTATTCCTAACACTTTGGCCAtacaggctgtggtcactgctGCAGAACATGATCAGAGAGCTTCGTTTGGTTGCTGCATGTTTGGCCCTGGAGGAGCAATGGTCGAGGCATCCCACTTCTCTGTTCCCAATCTCATCGCTCTAACCCAGTCCTGTTCTCCAGTTCTTCACTGCAGGGCCCGCCGTGTCACCCCACAGAGCTGCGGCCTAATTCGGTGGTGTGTGCTTTTGCTTTGCCAATGACTTGTGATCAAGCTATCGCGATGTGAATCAATGCCAACAGTGCTGAAGTCTAAACTGTGTCCTGGAAAGTGTAAGTGTTCCCcctcagccccccccccacgccATTGATTTCAGTCCCGATGCTATGCACTGTTCAATGTTGTTGCATGACTGCCGCCGCCGCTGCGTTGTTTCACTGTCGTCGCTGTTGCCGTTGGTGCTGTTGCTGTCGTCGTCGCTGTTCCGAtttatgattttgtattatatttacacataaGTGCCTTTACCCATGATACAATAGGCGTTGTGCTGTATGTGGGCCGTTGTCGCGCTCTTGGCTGTCCGGGTCTCTGCAGATGATCCCACCGATGGAGTTCAGACGCCGTGGCAAACGCCTggtccatttttgtttttatttgtctgtttacgggggtggggggggggagtcaGGTCATGGGATCGTGTTACTGAACTTCACTGGCATCCGTGCAGTGTCCATTCTCTTAATCTACTCACTTGACTTGTTAGCCATACTTGCCAATTTGCTTTTGCAGTTACAGTGGTTGTAGTTGGAGCAGATGTCTTTGACCAAAGCTGTCCACAGGAGTTCACAGGCACCACGTAGAAGTTACTGAAACGGATGGTTTGGGAAAGAGGTTTACAGAGTTTTCACACACCTTGAATGTCTATTAGAGCACAGGACTAGCACAGTCTATATCTGGCCATACTGTCTACTCTTCTTTTCAACAGACTGCTTGATCAAGGTTTCTGTGGGTCCTTCATGGAAAAATaagaatcaataaaaaaataaatcaataaaggaTCACATTAATAGTGACTTTTTCTTTNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018732 False 321 mRNA 0.55 5 19223168 19234351
TU148164 True 4038 lncRNA 0.42 2 19223374 19227433

Neighbor

gene id symbol gene type direction distance location
AMCG00018731 ssh1,LOC106584991,LOC102780175 coding upstream 222 19206055 ~ 19222946 (+)
AMCG00018730 svop,svopa,LOC107696058 coding upstream 41440 19165886 ~ 19181728 (+)
AMCG00018724 NA coding upstream 68571 19153458 ~ 19154597 (+)
AMCG00018725 NA coding upstream 106903 19108376 ~ 19116265 (+)
AMCG00018719 kctd10,LOC105014907 coding upstream 144391 19073104 ~ 19078777 (+)
AMCG00018737 coro1c,LOC106584990 coding downstream 40558 19274909 ~ 19282966 (+)
AMCG00018734 NA coding downstream 54838 19289189 ~ 19296001 (+)
AMCG00018735 NA coding downstream 65597 19299948 ~ 19306740 (+)
AMCG00018739 NA coding downstream 92128 19326479 ~ 19327879 (+)
AMCG00018736 sart3 coding downstream 98139 19332490 ~ 19345758 (+)
G118013 NA non-coding upstream 492356 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding upstream 546942 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 1005069 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 1242229 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1638056 17584751 ~ 17585112 (+)
G118285 NA non-coding downstream 221791 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 233472 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 245340 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 342613 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 759775 19994126 ~ 19994329 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 314212 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 383073 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 501825 18719206 ~ 18721343 (+)
AMCG00018681 NA other upstream 1240151 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 2153498 17068212 ~ 17069670 (+)
AMCG00018740 NA other downstream 139121 19373472 ~ 19482092 (+)
AMCG00018762 NA other downstream 736788 19971139 ~ 19974730 (+)
G118557 NA other downstream 1025026 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 1137868 20372219 ~ 20374812 (+)
G118623 NA other downstream 1279809 20514160 ~ 20514491 (+)

Expression


Co-expression Network