AMCG00018735


Basic Information

Item Value
gene id AMCG00018735
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19299948 ~ 19306740 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018735
ATGAAAACAATCTGTCTGCAGAGCACCCAGCCGCTCGGCTCAGAGGCAgctgagaggaggaggaagcagggagagagggggGCCACCCGAGGAACCATGAAGTCCTGCCCGGTTCTCCTGCTGACCTCTGTGTCTCTTGTCCTGTTGTGGATCGGCGGCTGTGCCTCCACACCGTTCCCCAGCACCTCCAACTCTTCGGCAGAGGAGAGCGGGGACTTCGACCCGGACAACTCCTTCTCCAGTCCCTTCACGACAGAGAGCTCCGTTCAGGACTCTTCCACAGTGAGAGTCTACAATGGCACACGAGTGAAGCCCTTCATCCTCAGCCAGGTGGTGGACTTCCTGAGGGACAACATGCTGCTGATCATCGTGGTCTCCTCTCTGCTGTCGCTCATCATCTTCATCGTCTGCTGCGCCTCCATCCTGAGACACAAGCGCAAGGTCAATGCCTATTACCCCTCCTCCTTCCCTGCGAAGAAATATGTGGACACGAAGGACAAGTCAGGCGGGGCAAGGAGTTTTAGTGAGATCCCAGAAAAACCCCCTAACACCCATCAAGACGAGCCTGTGGACTGCACCAAGCAGCTCCAAGCAGACATCAAGGCCGCTGCCCAGAGCCTGAGATCCCCTTCCAAGCCTCCTCCAAGCAACCAGGAGTCCAAAGCCCCTGAACAGAAACCCGTCACAGAACAGAAGACCCAACAAGAAACCCCCAGGCCTCAGGAGACCGCCACTACGCCTCAGATCACCGTCCAACAAGAACCCTGCACCCCACCCCAGGTTCCTGCTCAGCAGCCACCCGTCAACCCACCCGATCTCCCTCCCCAACAAGAAGCAAGCCCGGCCCAAAGCAAGTTGCCAGAGCAGAGTTCAGGCTCAGGTCAGGCTCTGGATTGCCCAGCAGAGGAGCCAAAGGAGGTCCCAGCTCCACCCAAAGAAGACCCCCCAGTACAAGAGTCTCATCAGGAGACAGGGCCCAATCCAGAGAAGCAGGAGGCCGAGCGGGAAGTGAAGCCTGCCGCTGAAGAGACTCAGGAAGTGACCACTGACCAGCAGCTTGACTGTTCGTCTAGCAACCAGACCCAAAGCAGTCCAGCTCCAGCAGCGCAAACTATCAGTGGGGAGACCACAGCATTTTAACAAGGGACCACCAGGAGCCTCTGGAATATTCCACAGTGCCTTCCCTGCATATTTGGGTTTATTCTTTTAACTACACGATCACCAAAGAatgccttaaaaaaacaacactacagtGTTATATCTTCTTATTCATTTCACCATGTGCTTCTTATGgtcctttttaattttgatctTCTAGTCCTTTGtgccattttttgtatttgtttttaagatctGGAAAGGGATATCATTTCCATTGACGATAAGACTGTTTAGTAAATAAGTTTCTGTTTCTGGCTCAGCATCAACTGTGTACGTGGACAGAGCGATTTAATCACTTATGGAGAGTTGATGTGTAGAAAGTTGTGGTACTCTGGATATTTAATAGCAGCTCGTGTGTTTTTATCATCatacttatttaaaaagaaatcctGGCCGTGCCGGGCTCGCTTTCCTCCTGACAAAGTGAAGAGTATACCTATTGGTATATGAGTATTtgctttttacacttttttttaattatttggcaGTATAAATGTGTTGTGATATAAACCTATAAAAAGGCATCAGCaagcactttaatatttgtatccACCTGGAAGTGCTCAGATATTAAAGCCATTGTTATTATCACATTAAAGAGCTGTTCTTAAACTTGCTGAACACTCTTGCCTGCAGACAATCAACTACCCTGAGGGGACTTTCATTGGTTGTGCACAAAGCTCTGTACAGAAAGTACCTTCCTTTTATGAGTGGGAGTTGGCAATTTTAATAACGCAGCTCCGAATGAGACGTGGAAAGTTGTATTTATATAGACATGTAATAACTATCGTATGTAATAATTCAGATTTCATTGTAGACGAAGATGACTTCCTGTATCGTACCTGATTTGTTACCGTGTTTTTTTATACTCTCCCCATGTTTTTCCTCAGTAATCTTCTAAGGactgtacagaaaaaaaggaggaatgtgattcagtttaaaaaacagaattccCATCATAAATGGGCCAACCGCTCACGCACAACAACTCAGTTCAGTAGTTTAGCGAAACGCTAACACTTGGGATTTCGTTTAAGGGTGATAAGAcgcattttatttaactttctaAGAGACTGATAGCAAGTGGTACTTAGAGCTCGTCAGCACAATGGCACTGTTGTAAGccaaagaaaaatgtctgcttttcCTGGTGAACTAGAAATAGTTATCAGTGTTGCTATgtgtttgtcttatttttttaatatttaactatGACCACCTCTCATCTTGTGAAGTGGCTTGATTTTCTATAATcatgtttcttttgtaaattaaatcattGTTGCTTTCCAGGTCCaacaaagaattaaaaaattcaaacaagcacacaaatgttaatctctttccatttcttcttttactcttgatttttttttttaccaatacatgcatacatacttaCATTCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018735 True 2570 mRNA 0.45 2 19299948 19306740

Neighbor

gene id symbol gene type direction distance location
AMCG00018734 NA coding upstream 3947 19289189 ~ 19296001 (+)
AMCG00018737 coro1c,LOC106584990 coding upstream 16982 19274909 ~ 19282966 (+)
AMCG00018731 ssh1,LOC106584991,LOC102780175 coding upstream 77002 19206055 ~ 19222946 (+)
AMCG00018730 svop,svopa,LOC107696058 coding upstream 118220 19165886 ~ 19181728 (+)
AMCG00018724 NA coding upstream 145351 19153458 ~ 19154597 (+)
AMCG00018739 NA coding downstream 19739 19326479 ~ 19327879 (+)
AMCG00018736 sart3 coding downstream 25750 19332490 ~ 19345758 (+)
AMCG00018743 rnf185,LOC102783490 coding downstream 299282 19606022 ~ 19612141 (+)
AMCG00018746 NA coding downstream 305885 19612625 ~ 19636734 (+)
AMCG00018745 NA coding downstream 369882 19676622 ~ 19677939 (+)
G118013 NA non-coding upstream 569136 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding upstream 623722 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 1081849 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 1319009 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1714836 17584751 ~ 17585112 (+)
G118285 NA non-coding downstream 149402 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 161083 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 172951 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 270224 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 687386 19994126 ~ 19994329 (+)
AMCG00018732 NA other upstream 65597 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 390992 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 459853 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 578605 18719206 ~ 18721343 (+)
AMCG00018681 NA other upstream 1316931 17981140 ~ 17983017 (+)
AMCG00018740 NA other downstream 66732 19373472 ~ 19482092 (+)
AMCG00018762 NA other downstream 664399 19971139 ~ 19974730 (+)
G118557 NA other downstream 952637 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 1065479 20372219 ~ 20374812 (+)
G118623 NA other downstream 1207420 20514160 ~ 20514491 (+)

Expression


Co-expression Network